mRNA_P-wetherbeei_contig1592.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1592.1.1
Unique NamemRNA_P-wetherbeei_contig1592.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1592.1.1 vs. uniprot
Match: D7FW36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW36_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 9.450e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RLHDCLLAALRVLLNVTHHNADACGAVAAAGGLPMLLSC 117
            ++H+CLLAALRVL+NVTHH+A  C  VAA  GL  L+ C
Sbjct:  342 KVHECLLAALRVLINVTHHDARVCAEVAAKRGLEALMRC 380
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BLAST of mRNA_P-wetherbeei_contig1592.1.1 vs. uniprot
Match: A0A6H5JF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF40_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.520e-6
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 RLHDCLLAALRVLLNVTHHNADACGAVAAAGGLPMLLSC 117
            ++H+CLLAALRVL+NVTHH+   C  VAA  GL  L+ C
Sbjct:  507 KVHECLLAALRVLINVTHHDPRVCAEVAARRGLETLMRC 545
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1592.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW36_ECTSI9.450e-761.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF40_9PHAE4.520e-658.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1592contigP-wetherbeei_contig1592:98..214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size117
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003220.1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.2592545-CDS-P-wetherbeei_contig1592:97..2141683186071.2592545-CDS-P-wetherbeei_contig1592:97..214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1592 98..214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1592.1.1prot_P-wetherbeei_contig1592.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1592 98..214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1592.1.1

>prot_P-wetherbeei_contig1592.1.1 ID=prot_P-wetherbeei_contig1592.1.1|Name=mRNA_P-wetherbeei_contig1592.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
RLHDCLLAALRVLLNVTHHNADACGAVAAAGGLPMLLSC
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mRNA from alignment at P-wetherbeei_contig1592:98..214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1592.1.1 ID=mRNA_P-wetherbeei_contig1592.1.1|Name=mRNA_P-wetherbeei_contig1592.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig1592:98..214+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTCCACGACTGTTTGCTGGCGGCGCTGCGTGTGCTGCTCAACGTGAC
GCACCACAACGCGGATGCGTGCGGAGCGGTGGCCGCCGCGGGCGGCCTGC
CGATGCTGCTGTCGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1592:98..214+

>mRNA_P-wetherbeei_contig1592.1.1 ID=mRNA_P-wetherbeei_contig1592.1.1|Name=mRNA_P-wetherbeei_contig1592.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig1592:98..214+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTCCACGACTGTTTGCTGGCGGCGCTGCGTGTGCTGCTCAACGTGAC
GCACCACAACGCGGATGCGTGCGGAGCGGTGGCCGCCGCGGGCGGCCTGC
CGATGCTGCTGTCGTGT
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