mRNA_P-wetherbeei_contig15902.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15902.1.1
Unique NamemRNA_P-wetherbeei_contig15902.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15902.1.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.700e-39
Identity = 101/230 (43.91%), Postives = 130/230 (56.52%), Query Frame = 1 
Query:  106 CRNMADQLLYLNAELSSPRNAAVHVHISCDFWVQNLSGLPLTLGEPVLRVDRGVGSGSAVTAGAAGAAGSPRHHGGSGALDGPLAPGSPSSDRGGGKKHGSKPTEVLVAAAQGAQ--VVEEVFELRVRHQYGEE-----EILWVTDYGNPRPPPNHIRLPSPRWHWADDWAIDYSGAVARDLPGLDGGGWESCGRQNKGI-YSGRNFGADRSFRQTDRVWRRRWMRTRVP 771
            CRNM++Q+LYL+ E +S R  +V V +   FWV+NLSGLPLTLGEPV R    +       A +A    + R+              SPS  R           +V ++A Q  Q  + EEVFELR+  + GEE     +  W+T  GNPR P   +RLPS  W W  +W ID SGAVA + PG DGGGWESC R+ KG  YS  +F + R+F  +D VWRRRW+R RVP
Sbjct:  508 CRNMSNQILYLSVEAASVRMNSVLVTVYAGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLADSAARDKTRRY--------------SPSPPR-------QSSVDVYLSAVQSDQHGLTEEVFELRLARR-GEEGMDSYDTRWITAQGNPRSPCTQVRLPSDLWRWDGEWTIDVSGAVAPNAPGTDGGGWESCPRKLKGASYSNSSFSSSRAFTLSDPVWRRRWVRRRVP 715
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BLAST of mRNA_P-wetherbeei_contig15902.1.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.490e-33
Identity = 99/240 (41.25%), Postives = 129/240 (53.75%), Query Frame = 1 
Query:  106 CRNMADQLLYLNAELSSPRNAAVHVHISCDFWVQNLSGLPLTLGEPVLRVDRGVGSGSAVTAGAAGAAGSPRHHGGSGALDGPLAPGSPSSDRGGGKKHGSKPTEVLVAAAQGAQ--VVEEVFELRV--RHQYGEE--EILWVTDYGNPRPPPNHIRLPSPRWHWADDWAIDYSGAVARDLPGLDGGGWESCGRQNKGI-YSGRNFGADRSFRQTDRVWRRRWMRT-----RVPDAAEWG 789
            CRNM++Q+LYL+ E +S R  +V V +   FWV+NLSGLPLTLGEPV R    +       A +A      R+              SPS  R           +V ++A Q  Q  + EEVFELR+  R Q G +  +  W+T  GNPR P   +RLPS  W W  +W +D SGAVA + PG  GGGWESC R+ KG  YS  +F + R+F  +D VWRRR  R      R+  A+ WG
Sbjct:  625 CRNMSNQILYLSVEAASVRMNSVLVTVFSGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLADSAARDKMRRY--------------SPSPPR-------QSSWDVHLSAVQSDQHGMTEEVFELRLARRGQEGMDSYDTRWITAQGNPRSPCTQVRLPSDLWRWDGEWTMDVSGAVAPNAPGTGGGGWESCPRKLKGASYSNSSFSSSRAFTLSDPVWRRRGTRRPVSRHRLSRASPWG 843
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BLAST of mRNA_P-wetherbeei_contig15902.1.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.300e-21
Identity = 82/225 (36.44%), Postives = 108/225 (48.00%), Query Frame = 1 
Query:   94 EVMACRNMADQLLYLNAELSSPRNAAVHVHISCDFWVQNLSGLPLTLGEPVLRVDRGVGSGSAVTAGAAGAAGSPRHH-----GGSGA---------LDGP----LAPGSPSSDRGGGKKHGS---KPTEVLV---------------------AAAQGAQVVEEVFELRVRHQYGEEEILWVTDYGNPRPPPNHIRLPSPRWHWAD-DWAIDYSGAVARDLPGL 639
            EV++C N A+QLLYLN  + +PR  A+   ++ DFW++NL  LPL LGEP++R             GAA AAGS  H      GG            L  P    LAP    +       +G+    P + LV                     +  + + V EEVFE+RV    G  E LW T++GNP P P  +RLP   W WA  +W +D SGAVARD+PGL
Sbjct: 4213 EVISCCNAANQLLYLNLLVRAPRPGALAATLAADFWIRNLRRLPLALGEPLMR-------------GAAPAAGSSAHAPVSPTGGXXXXXXADAQLDLTSPHEIMLAPMQEEAFE---VLNGALLLPPAQSLVTRESSLMQELTRENALMRECSSVVKESSVTEEVFEVRVEDPSGRRETLWCTEFGNPHPSPPQVRLPGAGWRWATPEWRLDVSGAVARDVPGL 4421
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15902.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5D8_9PHAE1.700e-3943.91PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FMF6_ECTSI1.490e-3341.25SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836C849_9STRA1.300e-2136.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15902contigP-wetherbeei_contig15902:649..1560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6500.XP_005108067.1
Preferred nameTECPR1
PFAMsGal-bind_lectin,Hyd_WA,Pex24p
Model size912
Max annot lvl33208|Metazoa
KEGG koko:K17988
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000421,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005776,GO:0006914,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009987,GO:0016020,GO:0016043,GO:0016236,GO:0022411,GO:0031090,GO:0031974,GO:0031981,GO:0032266,GO:0032984,GO:0035091,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0061919,GO:0070013,GO:0071840,GO:0097352,GO:0098588,GO:0098805,GO:0098852,GO:1901981
Exons1
Evalue0.000129
EggNOG OGsKOG3669@1|root,KOG3669@2759|Eukaryota,38I2F@33154|Opisthokonta,3BAQZ@33208|Metazoa,3CRSU@33213|Bilateria
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13
Ec32 orthologEc-05_000910.1
DescriptionTectonin beta-propeller
Cds size912
COG categoryS
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.7385802-CDS-P-wetherbeei_contig15902:648..15601683186070.7385802-CDS-P-wetherbeei_contig15902:648..1560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15902 649..1560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15902.1.1prot_P-wetherbeei_contig15902.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15902 649..1560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15902.1.1

>prot_P-wetherbeei_contig15902.1.1 ID=prot_P-wetherbeei_contig15902.1.1|Name=mRNA_P-wetherbeei_contig15902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=304bp
GGGSGGGGGGSSGGSGIITNGSGHIELAHQFEVMACRNMADQLLYLNAEL
SSPRNAAVHVHISCDFWVQNLSGLPLTLGEPVLRVDRGVGSGSAVTAGAA
GAAGSPRHHGGSGALDGPLAPGSPSSDRGGGKKHGSKPTEVLVAAAQGAQ
VVEEVFELRVRHQYGEEEILWVTDYGNPRPPPNHIRLPSPRWHWADDWAI
DYSGAVARDLPGLDGGGWESCGRQNKGIYSGRNFGADRSFRQTDRVWRRR
WMRTRVPDAAEWGVSQGKTSPVLSRGGGAGGSFRSGSVGGGGGGGSGGGG
LNRD
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mRNA from alignment at P-wetherbeei_contig15902:649..1560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15902.1.1 ID=mRNA_P-wetherbeei_contig15902.1.1|Name=mRNA_P-wetherbeei_contig15902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig15902:649..1560- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGGCAGCGGTGGCGGCGGCGGTGGCAGCAGCGGTGGGAGCGGCAT
CATTACCAATGGCAGCGGCCACATCGAGCTGGCGCACCAGTTCGAGGTGA
TGGCGTGCCGCAACATGGCGGACCAGCTGCTTTACCTGAACGCCGAGCTC
TCGAGCCCGCGCAACGCCGCCGTCCACGTCCACATCTCCTGTGACTTTTG
GGTTCAAAACCTCAGCGGCTTGCCGCTCACACTGGGCGAGCCGGTGTTGC
GGGTGGACCGCGGCGTCGGCAGCGGCAGCGCGGTGACGGCAGGCGCCGCC
GGCGCGGCGGGGTCGCCGCGCCACCACGGCGGTTCCGGTGCGCTTGATGG
GCCGCTGGCGCCGGGGTCGCCGTCGTCGGACCGCGGCGGGGGCAAGAAGC
ACGGCTCCAAGCCGACCGAGGTGTTGGTGGCGGCGGCGCAGGGGGCACAG
GTAGTGGAGGAAGTCTTCGAGCTGCGCGTCCGGCACCAGTACGGCGAGGA
GGAGATTCTGTGGGTCACAGACTACGGCAACCCACGGCCGCCGCCCAACC
ACATCCGGCTCCCCAGCCCGCGCTGGCACTGGGCCGACGACTGGGCGATT
GACTACTCGGGCGCCGTCGCCCGCGACCTGCCTGGGTTGGACGGCGGCGG
CTGGGAGTCGTGTGGGCGGCAGAACAAGGGCATCTATTCAGGGCGGAACT
TTGGGGCGGACCGCTCCTTCCGTCAGACAGACCGCGTCTGGCGGCGCCGA
TGGATGCGGACGCGTGTGCCGGACGCCGCCGAATGGGGCGTCTCGCAGGG
GAAGACGTCGCCGGTGCTGTCGAGGGGCGGTGGCGCCGGCGGCTCATTCC
GCAGTGGCAGCGTCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGTGGC
CTCAACCGGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15902:649..1560-

>mRNA_P-wetherbeei_contig15902.1.1 ID=mRNA_P-wetherbeei_contig15902.1.1|Name=mRNA_P-wetherbeei_contig15902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig15902:649..1560- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGGCAGCGGTGGCGGCGGCGGTGGCAGCAGCGGTGGGAGCGGCAT
CATTACCAATGGCAGCGGCCACATCGAGCTGGCGCACCAGTTCGAGGTGA
TGGCGTGCCGCAACATGGCGGACCAGCTGCTTTACCTGAACGCCGAGCTC
TCGAGCCCGCGCAACGCCGCCGTCCACGTCCACATCTCCTGTGACTTTTG
GGTTCAAAACCTCAGCGGCTTGCCGCTCACACTGGGCGAGCCGGTGTTGC
GGGTGGACCGCGGCGTCGGCAGCGGCAGCGCGGTGACGGCAGGCGCCGCC
GGCGCGGCGGGGTCGCCGCGCCACCACGGCGGTTCCGGTGCGCTTGATGG
GCCGCTGGCGCCGGGGTCGCCGTCGTCGGACCGCGGCGGGGGCAAGAAGC
ACGGCTCCAAGCCGACCGAGGTGTTGGTGGCGGCGGCGCAGGGGGCACAG
GTAGTGGAGGAAGTCTTCGAGCTGCGCGTCCGGCACCAGTACGGCGAGGA
GGAGATTCTGTGGGTCACAGACTACGGCAACCCACGGCCGCCGCCCAACC
ACATCCGGCTCCCCAGCCCGCGCTGGCACTGGGCCGACGACTGGGCGATT
GACTACTCGGGCGCCGTCGCCCGCGACCTGCCTGGGTTGGACGGCGGCGG
CTGGGAGTCGTGTGGGCGGCAGAACAAGGGCATCTATTCAGGGCGGAACT
TTGGGGCGGACCGCTCCTTCCGTCAGACAGACCGCGTCTGGCGGCGCCGA
TGGATGCGGACGCGTGTGCCGGACGCCGCCGAATGGGGCGTCTCGCAGGG
GAAGACGTCGCCGGTGCTGTCGAGGGGCGGTGGCGCCGGCGGCTCATTCC
GCAGTGGCAGCGTCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGTGGC
CTCAACCGGGAC
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