mRNA_P-wetherbeei_contig159.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig159.3.1
Unique NamemRNA_P-wetherbeei_contig159.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig159.3.1 vs. uniprot
Match: A0A835YUT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.210e-35
Identity = 75/194 (38.66%), Postives = 105/194 (54.12%), Query Frame = 1 
Query:    7 ESEAIAYFEAKLRVAPYNFRLHRNLAPLVLARGEVNRALRHYRSAIDLNPADADSRNDLAALLFSLGKWQPALAALKQVWEKCLHQLRQLCFKAARLKTSHEQRTYSCDIKKRMNFPCQVLELNPSHAQAHANLTALYFSRGDIGLARRHAHEAAAFRPLDPAAHRNLARVLDATGNTPEAIRSNKVAIRRGPG 588
            ++E + YF  KLR AP N   HRNLAPL+++ G++ +A+ HYR AI+LNPAD  S+ND+   L+ LGKW+ ALAA  QV  +                                          P    AH N++A+YF RG +  A +HA +A    P+D  AHRNLA+VLDATG++  A+   ++A+ RGPG
Sbjct:   19 QAEGLKYFRHKLRQAPDNASYHRNLAPLLVSEGQLTKAIHHYRRAIELNPADCSSKNDIGVCLWQLGKWEAALAAFVQVTRE-----------------------------------------RPDFTAAHVNMSAVYFGRGMLVQALQHARQAVHLAPMDARAHRNLAKVLDATGDSTCAMAHRQIAVLRGPG 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig159.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUT1_9STRA1.210e-3538.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig159contigP-wetherbeei_contig159:2965..3564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog997346.HMPREF9374_1932
PFAMsTPR_8
Model size600
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000522
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1UBJN@1239|Firmicutes,4IMZG@91061|Bacilli,27BRC@186824|Thermoactinomycetaceae
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006440.1
DescriptionTetratricopeptide repeat
Cds size600
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.4424791-CDS-P-wetherbeei_contig159:2964..35641683186070.4424791-CDS-P-wetherbeei_contig159:2964..3564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig159 2965..3564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig159.3.1prot_P-wetherbeei_contig159.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig159 2965..3564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig159.3.1

>prot_P-wetherbeei_contig159.3.1 ID=prot_P-wetherbeei_contig159.3.1|Name=mRNA_P-wetherbeei_contig159.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
MNESEAIAYFEAKLRVAPYNFRLHRNLAPLVLARGEVNRALRHYRSAIDL
NPADADSRNDLAALLFSLGKWQPALAALKQVWEKCLHQLRQLCFKAARLK
TSHEQRTYSCDIKKRMNFPCQVLELNPSHAQAHANLTALYFSRGDIGLAR
RHAHEAAAFRPLDPAAHRNLARVLDATGNTPEAIRSNKVAIRRGPGAAAA
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mRNA from alignment at P-wetherbeei_contig159:2965..3564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig159.3.1 ID=mRNA_P-wetherbeei_contig159.3.1|Name=mRNA_P-wetherbeei_contig159.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig159:2965..3564+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGAGAGCGAGGCCATAGCGTACTTCGAGGCGAAGCTGAGGGTAGC
TCCGTACAACTTTCGGTTGCACCGCAACCTCGCACCTCTTGTCCTCGCAC
GGGGAGAGGTGAATCGCGCGCTTCGACACTACAGAAGTGCCATCGACCTC
AATCCAGCCGATGCGGACTCTCGCAACGATCTCGCAGCTTTGCTATTCAG
CCTGGGCAAGTGGCAGCCGGCGCTCGCCGCTCTGAAGCAGGTATGGGAAA
AATGCCTCCATCAACTGAGACAACTCTGTTTCAAAGCAGCACGTCTGAAG
ACAAGCCACGAACAACGAACATATTCTTGCGATATAAAGAAACGAATGAA
CTTCCCGTGTCAGGTCTTGGAGCTGAACCCGAGCCACGCCCAAGCGCACG
CCAACCTCACCGCCCTCTACTTCTCCCGAGGCGACATCGGCCTCGCACGC
CGCCACGCCCACGAGGCCGCCGCATTTCGCCCGCTGGACCCGGCCGCCCA
CCGCAACCTGGCGAGGGTGCTCGACGCCACCGGCAATACGCCCGAGGCCA
TCCGGAGCAACAAGGTGGCGATCCGTCGCGGCCCCGGCGCCGCCGCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig159:2965..3564+

>mRNA_P-wetherbeei_contig159.3.1 ID=mRNA_P-wetherbeei_contig159.3.1|Name=mRNA_P-wetherbeei_contig159.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig159:2965..3564+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGAGAGCGAGGCCATAGCGTACTTCGAGGCGAAGCTGAGGGTAGC
TCCGTACAACTTTCGGTTGCACCGCAACCTCGCACCTCTTGTCCTCGCAC
GGGGAGAGGTGAATCGCGCGCTTCGACACTACAGAAGTGCCATCGACCTC
AATCCAGCCGATGCGGACTCTCGCAACGATCTCGCAGCTTTGCTATTCAG
CCTGGGCAAGTGGCAGCCGGCGCTCGCCGCTCTGAAGCAGGTATGGGAAA
AATGCCTCCATCAACTGAGACAACTCTGTTTCAAAGCAGCACGTCTGAAG
ACAAGCCACGAACAACGAACATATTCTTGCGATATAAAGAAACGAATGAA
CTTCCCGTGTCAGGTCTTGGAGCTGAACCCGAGCCACGCCCAAGCGCACG
CCAACCTCACCGCCCTCTACTTCTCCCGAGGCGACATCGGCCTCGCACGC
CGCCACGCCCACGAGGCCGCCGCATTTCGCCCGCTGGACCCGGCCGCCCA
CCGCAACCTGGCGAGGGTGCTCGACGCCACCGGCAATACGCCCGAGGCCA
TCCGGAGCAACAAGGTGGCGATCCGTCGCGGCCCCGGCGCCGCCGCTGCC
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