mRNA_P-wetherbeei_contig15873.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15873.1.1
Unique NamemRNA_P-wetherbeei_contig15873.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15873.1.1 vs. uniprot
Match: D7FKI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI2_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-11
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 WPLIMSSTVLNGQLWGLALKEWDGAPLRALHMNYVSIAVLILAATVIAIAGSVL 162
            WPLIMSSTVL+GQ+W + +KEW G P  A+ +N  SI +L+ A ++IA+AG+VL
Sbjct:  248 WPLIMSSTVLSGQIWSVFMKEWAGVPPLAMKVNVASICLLVAAVSIIAVAGAVL 301
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BLAST of mRNA_P-wetherbeei_contig15873.1.1 vs. uniprot
Match: A0A6H5KJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ20_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.300e-11
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 WPLIMSSTVLNGQLWGLALKEWDGAPLRALHMNYVSIAVLILAATVIAIAGSVL 162
            WPLIMSSTVL+GQ+W + +KEW G P  A+ +N  SI +L+ A ++IAIAG+VL
Sbjct:  367 WPLIMSSTVLSGQIWSVFMKEWAGVPPLAMKVNVASICLLVAAVSIIAIAGAVL 420
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15873.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKI2_ECTSI1.280e-1155.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ20_9PHAE1.300e-1157.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15873contigP-wetherbeei_contig15873:1133..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKI2
Model size165
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.44e-08
EggNOG OGsCOG0697@1|root,2SCAI@2759|Eukaryota
Descriptionpyrimidine nucleotide-sugar transmembrane transport
Cds size153
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.027071-CDS-P-wetherbeei_contig15873:1132..12851683186070.027071-CDS-P-wetherbeei_contig15873:1132..1285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15873 1133..1285 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.0380306-UTR-P-wetherbeei_contig15873:1285..12971683186070.0380306-UTR-P-wetherbeei_contig15873:1285..1297Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15873 1286..1297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15873.1.1prot_P-wetherbeei_contig15873.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15873 1133..1285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15873.1.1

>prot_P-wetherbeei_contig15873.1.1 ID=prot_P-wetherbeei_contig15873.1.1|Name=mRNA_P-wetherbeei_contig15873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MSSTVLNGQLWGLALKEWDGAPLRALHMNYVSIAVLILAATVIAIAGSVL
*
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mRNA from alignment at P-wetherbeei_contig15873:1133..1297-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15873.1.1 ID=mRNA_P-wetherbeei_contig15873.1.1|Name=mRNA_P-wetherbeei_contig15873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig15873:1133..1297- (Phaeothamnion wetherbeei SAG_119_79)
TGGCCGTTGATCATGTCGTCGACGGTGCTGAATGGCCAGCTGTGGGGGCT
GGCCCTCAAGGAGTGGGATGGGGCGCCGCTGCGGGCACTCCACATGAACT
ACGTCAGCATCGCCGTGCTCATCCTGGCCGCCACGGTGATTGCAATCGCC
GGGTCGGTGCTGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15873:1133..1297-

>mRNA_P-wetherbeei_contig15873.1.1 ID=mRNA_P-wetherbeei_contig15873.1.1|Name=mRNA_P-wetherbeei_contig15873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig15873:1133..1297- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCGACGGTGCTGAATGGCCAGCTGTGGGGGCTGGCCCTCAAGGA
GTGGGATGGGGCGCCGCTGCGGGCACTCCACATGAACTACGTCAGCATCG
CCGTGCTCATCCTGGCCGCCACGGTGATTGCAATCGCCGGGTCGGTGCTG
TAA
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