mRNA_P-wetherbeei_contig15867.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15867.2.1
Unique NamemRNA_P-wetherbeei_contig15867.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15867.2.1 vs. uniprot
Match: A0A7C1GEZ9_9DELT (Type II secretion system protein GspC n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C1GEZ9_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 6.090e-6
Identity = 47/188 (25.00%), Postives = 84/188 (44.68%), Query Frame = 1 
Query:   97 LRGTMVGTT--TSAVLEYQGMTRVLKEGDAIGPFRVGGIYPKKASVAGEGHKYFLALTPQQPATAAAAGTAPRRESGTA-------------------------QWVNGLTVTQVVREGSPIGLLIHNQGAPLPINSQEGPLSQYGVYDSDVVKTVNGRPLRAQEDLWWLHEELLHSPSLEIAMERGG 579
            L+GT+ G    + A++E +   +  K G+ +   ++  IY  K  +   G +  L +  ++P ++  A +APRR    A                         Q++    V    REG P G  + N        + E  + + GV   D++K+VNG P+R  ED + +++EL +  S+E+ +ER G
Sbjct:   99 LKGTITGPKEISRAIIEEKNEQKSYKIGENVKGAKILAIYRNKVIMDVNGQEQMLIV--EEPRSSLQA-SAPRRREARAPTRPAVPEQREERPSGMTDIMRNLDQYIGKARVVPYFREGEPYGFRVSNV-------TDEALIYELGVRSGDIIKSVNGIPVRTPEDAFLMYQELQNESSVELELERQG 276
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BLAST of mRNA_P-wetherbeei_contig15867.2.1 vs. uniprot
Match: A0A832JKX3_9BACT (Uncharacterized protein n=1 Tax=Synergistales bacterium TaxID=2268201 RepID=A0A832JKX3_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 7.860e-5
Identity = 24/82 (29.27%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  334 VNGLTVTQVVREGSPIGLLIHNQGAPLPINSQEGPLSQYGVYDSDVVKTVNGRPLRAQEDLWWLHEELLHSPSLEIAMERGG 579
            ++ + +T  +++G+P+G  + +         ++  L+Q GV + DV+K++NG P+R   D+    + L++SPS+ + +ERGG
Sbjct:  235 MSAVRITPYLKDGNPVGFQVRHL-------KRDNLLAQLGVRNGDVIKSINGIPIRNVGDVMNTIQSLMNSPSISVEVERGG 309
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15867.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C1GEZ9_9DELT6.090e-625.00Type II secretion system protein GspC n=1 Tax=Delt... [more]
A0A832JKX3_9BACT7.860e-529.27Uncharacterized protein n=1 Tax=Synergistales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15867contigP-wetherbeei_contig15867:980..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons1
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.8083882-CDS-P-wetherbeei_contig15867:979..15581683186069.8083882-CDS-P-wetherbeei_contig15867:979..1558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15867 980..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15867.2.1prot_P-wetherbeei_contig15867.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15867 980..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15867.2.1

>prot_P-wetherbeei_contig15867.2.1 ID=prot_P-wetherbeei_contig15867.2.1|Name=mRNA_P-wetherbeei_contig15867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MVASPRPEVSQTPEAPVPSPTPHAEVQPELPILRGTMVGTTTSAVLEYQG
MTRVLKEGDAIGPFRVGGIYPKKASVAGEGHKYFLALTPQQPATAAAAGT
APRRESGTAQWVNGLTVTQVVREGSPIGLLIHNQGAPLPINSQEGPLSQY
GVYDSDVVKTVNGRPLRAQEDLWWLHEELLHSPSLEIAMERGG
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mRNA from alignment at P-wetherbeei_contig15867:980..1558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15867.2.1 ID=mRNA_P-wetherbeei_contig15867.2.1|Name=mRNA_P-wetherbeei_contig15867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig15867:980..1558+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGCCAGCCCACGCCCCGAAGTCAGCCAGACTCCCGAGGCGCCTGT
CCCCAGCCCCACTCCGCACGCTGAGGTCCAGCCCGAACTGCCCATCTTGC
GTGGAACCATGGTGGGAACGACCACGAGCGCAGTGCTCGAGTATCAGGGG
ATGACACGGGTCCTCAAAGAAGGCGACGCCATAGGTCCCTTCCGCGTTGG
AGGCATCTATCCCAAAAAGGCCAGCGTGGCAGGTGAAGGCCATAAATACT
TTTTGGCCCTGACGCCCCAGCAGCCCGCTACTGCCGCCGCCGCCGGAACT
GCACCTCGACGTGAAAGCGGCACTGCCCAGTGGGTCAACGGCTTGACCGT
CACCCAGGTCGTCCGCGAAGGGTCTCCCATCGGCCTCCTCATCCACAATC
AAGGCGCCCCTCTGCCGATCAATTCGCAGGAGGGACCCCTTAGCCAGTAC
GGCGTCTACGACAGCGATGTCGTGAAAACCGTCAACGGGCGTCCTCTGAG
GGCTCAAGAAGATTTATGGTGGCTCCACGAAGAGCTGCTCCATTCTCCAA
GCCTGGAAATCGCCATGGAACGTGGCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15867:980..1558+

>mRNA_P-wetherbeei_contig15867.2.1 ID=mRNA_P-wetherbeei_contig15867.2.1|Name=mRNA_P-wetherbeei_contig15867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig15867:980..1558+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGCCAGCCCACGCCCCGAAGTCAGCCAGACTCCCGAGGCGCCTGT
CCCCAGCCCCACTCCGCACGCTGAGGTCCAGCCCGAACTGCCCATCTTGC
GTGGAACCATGGTGGGAACGACCACGAGCGCAGTGCTCGAGTATCAGGGG
ATGACACGGGTCCTCAAAGAAGGCGACGCCATAGGTCCCTTCCGCGTTGG
AGGCATCTATCCCAAAAAGGCCAGCGTGGCAGGTGAAGGCCATAAATACT
TTTTGGCCCTGACGCCCCAGCAGCCCGCTACTGCCGCCGCCGCCGGAACT
GCACCTCGACGTGAAAGCGGCACTGCCCAGTGGGTCAACGGCTTGACCGT
CACCCAGGTCGTCCGCGAAGGGTCTCCCATCGGCCTCCTCATCCACAATC
AAGGCGCCCCTCTGCCGATCAATTCGCAGGAGGGACCCCTTAGCCAGTAC
GGCGTCTACGACAGCGATGTCGTGAAAACCGTCAACGGGCGTCCTCTGAG
GGCTCAAGAAGATTTATGGTGGCTCCACGAAGAGCTGCTCCATTCTCCAA
GCCTGGAAATCGCCATGGAACGTGGCGGA
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