mRNA_P-wetherbeei_contig15862.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15862.1.1
Unique NamemRNA_P-wetherbeei_contig15862.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A537E442_9PROT (GGDEF domain-containing protein n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537E442_9PROT)

HSP 1 Score: 209 bits (531), Expect = 2.110e-64
Identity = 99/145 (68.28%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERFKPD 435
            RLFGQA RY+R ASVLM+D DNLKAVND+HGH+AGNRLLR  A  ++AELRYTD+PARYGGDEF+VLLPETPP GA+DVAERIR ++A +PL  D  ++AS++SIGVA FP+DG+++DA+  RADRALY+AK  GRN V R++P+
Sbjct:  203 RLFGQALRYTRPASVLMVDLDNLKAVNDSHGHDAGNRLLRHTANALRAELRYTDLPARYGGDEFIVLLPETPPRGALDVAERIRKAVADRPLDMDVGKIASSVSIGVACFPDDGRTLDALATRADRALYEAKQKGRNCVVRYRPE 347          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A1F4FHE3_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FHE3_9PROT)

HSP 1 Score: 209 bits (531), Expect = 2.780e-64
Identity = 102/143 (71.33%), Postives = 119/143 (83.22%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERFK 429
            RLFGQA RY R ASVLMIDSDNLK VND +GHEAGNRLLRQLA  IQ ELR TDVPARYGGDEF+VLLPETP +GA+DVAER+R ++AG PL  +GK VAS++S+GVA FPEDG+++D +  RADRALY AK  GRN V R++
Sbjct:  213 RLFGQAVRYDRPASVLMIDSDNLKRVNDDYGHEAGNRLLRQLANAIQGELRATDVPARYGGDEFIVLLPETPGKGALDVAERVRSAIAGMPLAAEGKSVASSVSVGVACFPEDGRTLDTLAARADRALYMAKQQGRNCVVRYR 355          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A1F4EZJ5_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EZJ5_9PROT)

HSP 1 Score: 201 bits (510), Expect = 4.490e-61
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERF 426
            RLF QA RY R +SVLMIDSD+LK VND++GHEAGNRLLRQLA  I AELR +D+ ARYGGDEF+VLLPETP +GA +VA+RIRDS+ G PL  DGK++ S++SIG+ASFPEDG+++DA+  RADRALY+AK  GRNR  +F
Sbjct:  216 RLFAQALRYDRPSSVLMIDSDHLKGVNDSYGHEAGNRLLRQLARLILAELRGSDLSARYGGDEFIVLLPETPAKGAHEVADRIRDSVVGSPLDLDGKRIVSSVSIGIASFPEDGRTLDALAARADRALYRAKQDGRNRTVKF 357          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A1F4AQ42_9PROT (GGDEF domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AQ42_9PROT)

HSP 1 Score: 200 bits (509), Expect = 5.550e-61
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERF 426
            R+F QA+RY+R +S+LMIDSDNLK+VND+HGH+AGN+LLRQLA  I+AE+R TDVPARYGGDEF+V L ETP  GA+ VAERIRD+MA  PL FDG++V  T+SIGVA +P+DG  ++ I  RADRALY+AK +GRNRV RF
Sbjct:  212 RMFAQAKRYNRESSILMIDSDNLKSVNDSHGHQAGNQLLRQLAAAIRAEVRGTDVPARYGGDEFIVFLSETPINGALAVAERIRDTMAATPLEFDGREVLCTVSIGVAGYPDDGVMLETIAARADRALYQAKQSGRNRVIRF 353          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A536Y1P8_9PROT (GGDEF domain-containing protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y1P8_9PROT)

HSP 1 Score: 194 bits (493), Expect = 1.530e-58
Identity = 92/143 (64.34%), Postives = 117/143 (81.82%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERFK 429
            RLF QA R+ RA SVLMIDSD+LK+VND +GH AGNR+LR LAE IQAELR+TD+ ARYGGDEF+VLLP+TP +GA++VAERIR+ +AG PL  D K +A+++SIG+AS+PEDG ++DA+   AD ALY AK  GRNR  +F+
Sbjct:  212 RLFAQAARHGRATSVLMIDSDHLKSVNDGYGHAAGNRMLRHLAESIQAELRFTDIAARYGGDEFIVLLPDTPAKGAMEVAERIRNRIAGSPLAMDSKSLATSVSIGIASYPEDGATLDALAAHADGALYSAKQDGRNRSVKFR 354          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A521XH77_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XH77_9PROT)

HSP 1 Score: 187 bits (475), Expect = 6.280e-56
Identity = 90/142 (63.38%), Postives = 116/142 (81.69%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERF 426
            RLFGQA RY+R AS+LMIDSDNLK VND HGHEAGNRLL+ +A+ I  ELR+TDV ARYGGDEFV LLPET P+ A++VA+RI  ++   PL F+GK++ +++SIG+A +PEDG+S+DA+  RADRA+Y+AK  GRN V +F
Sbjct:  208 RLFGQAVRYNRQASLLMIDSDNLKEVNDLHGHEAGNRLLKMVAKCIGTELRHTDVLARYGGDEFVALLPETAPDRALEVAQRILKAVTTAPLEFEGKRIETSVSIGLACYPEDGRSIDAVQARADRAMYRAKEQGRNSVVKF 349          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A1F4CKH6_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CKH6_9PROT)

HSP 1 Score: 186 bits (473), Expect = 1.250e-55
Identity = 91/142 (64.08%), Postives = 116/142 (81.69%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERF 426
            RLF QA RY+R ASVLM DSDNLKAVND HGHEAGNRLL+ +A+ I+ ELR+TDV ARYGGDEFV LLPE P   A++VA+RI  ++A  PL F+GK + +++S G+AS+P+DG+++DAI GRADRA+Y+AK  GRNRV +F
Sbjct:  208 RLFEQAVRYNRPASVLMFDSDNLKAVNDLHGHEAGNRLLKLVAKCIETELRHTDVLARYGGDEFVALLPEAPAAKALEVAQRIIKTIATTPLEFEGKSIDTSVSAGLASYPDDGRTIDAIQGRADRAMYRAKEQGRNRVVKF 349          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A537AG54_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AG54_9PROT)

HSP 1 Score: 187 bits (474), Expect = 2.810e-55
Identity = 88/143 (61.54%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERFK 429
            RLF QA R+ RA SVLMIDSDNLK+VND +GH AG++LLR LA+ IQAELR+TDV ARYGGDEF+VLLP+TP +GA++VAERIR+ +AG P+  D +++ +++SIG+A +PEDG ++DA+   AD ALY AK  GRNR  +F+
Sbjct:  251 RLFAQAARHGRATSVLMIDSDNLKSVNDGYGHAAGDQLLRHLAQAIQAELRFTDVAARYGGDEFIVLLPDTPAKGALEVAERIRNRIAGAPVRIDSRELVTSVSIGIACYPEDGATLDALAAHADGALYSAKQDGRNRTVKFR 393          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A1F4H359_9PROT (GGDEF domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4H359_9PROT)

HSP 1 Score: 183 bits (465), Expect = 1.890e-54
Identity = 87/142 (61.27%), Postives = 115/142 (80.99%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERF 426
            RLF QAQRY+R  +V+MID D  KA+ND++GHE G+R+LR +A+ IQ ELR+TDV ARYGGDEFV LLPETP + A+DVA RIR+++AG PL  DG+ V  ++SIG+AS+PE G+++D+I+GRADRA+Y AK  GRN V +F
Sbjct:  206 RLFAQAQRYNRPVTVMMIDMDRFKALNDSYGHEWGDRMLRLVAKCIQTELRHTDVLARYGGDEFVALLPETPADSALDVASRIREAVAGTPLEADGRSVVGSVSIGIASYPEAGRTLDSILGRADRAMYLAKQKGRNGVVKF 347          
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Match: A0A1F4AYD6_9PROT (GGDEF domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AYD6_9PROT)

HSP 1 Score: 178 bits (452), Expect = 1.920e-52
Identity = 91/142 (64.08%), Postives = 108/142 (76.06%), Query Frame = 1
Query:    1 RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAELRYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVASTISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERF 426
            R F QA RYSR  SVLMIDSDNLK VND +GHEAGN LLRQLA  I+A LR TDVPARYGGDEFVVLLP+T  + A DVAERIR+S+  +PL      V  T+SIG+A +P DG+S + ++ RAD+A+Y+AK  GRNRV RF
Sbjct:  206 RAFAQAVRYSRPLSVLMIDSDNLKVVNDKYGHEAGNDLLRQLAASIKAHLRTTDVPARYGGDEFVVLLPDTDADAARDVAERIRESIVRRPLELRDDSVLITVSIGLACYPADGRSAEILMERADQAMYRAKEQGRNRVVRF 347          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537E442_9PROT2.110e-6468.28GGDEF domain-containing protein n=5 Tax=Betaproteo... [more]
A0A1F4FHE3_9PROT2.780e-6471.33GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4EZJ5_9PROT4.490e-6168.31GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4AQ42_9PROT5.550e-6167.61GGDEF domain-containing protein n=2 Tax=unclassifi... [more]
A0A536Y1P8_9PROT1.530e-5864.34GGDEF domain-containing protein n=2 Tax=Betaproteo... [more]
A0A521XH77_9PROT6.280e-5663.38GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4CKH6_9PROT1.250e-5564.08GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A537AG54_9PROT2.810e-5561.54GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4H359_9PROT1.890e-5461.27GGDEF domain-containing protein n=2 Tax=unclassifi... [more]
A0A1F4AYD6_9PROT1.920e-5264.08GGDEF domain-containing protein n=2 Tax=unclassifi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15862contigP-wetherbeei_contig15862:1..438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog56780.SYN_01324
PFAMsGGDEF
Model size438
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.16e-50
EggNOG OGsCOG2199@1|root,COG3706@2|Bacteria,1RCC4@1224|Proteobacteria,43AED@68525|delta/epsilon subdivisions,2WQS7@28221|Deltaproteobacteria
Descriptiondiguanylate cyclase
Cds size438
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.6298718-CDS-P-wetherbeei_contig15862:0..4381683186069.6298718-CDS-P-wetherbeei_contig15862:0..438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15862 1..438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15862.1.1prot_P-wetherbeei_contig15862.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15862 1..438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15862.1.1

>prot_P-wetherbeei_contig15862.1.1 ID=prot_P-wetherbeei_contig15862.1.1|Name=mRNA_P-wetherbeei_contig15862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
RLFGQAQRYSRAASVLMIDSDNLKAVNDTHGHEAGNRLLRQLAERIQAEL
RYTDVPARYGGDEFVVLLPETPPEGAVDVAERIRDSMAGKPLVFDGKQVA
STISIGVASFPEDGQSMDAIVGRADRALYKAKNAGRNRVERFKPD*
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mRNA from alignment at P-wetherbeei_contig15862:1..438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15862.1.1 ID=mRNA_P-wetherbeei_contig15862.1.1|Name=mRNA_P-wetherbeei_contig15862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig15862:1..438+ (Phaeothamnion wetherbeei SAG_119_79)
AGGCTGTTCGGCCAGGCGCAGCGCTATTCCCGCGCCGCGAGCGTATTGAT GATCGACTCGGACAACCTGAAGGCGGTCAACGACACCCACGGCCATGAAG CGGGCAACCGGCTGCTGCGCCAGCTCGCGGAGCGCATCCAGGCCGAGCTG CGCTACACCGACGTGCCGGCGCGCTACGGCGGGGACGAGTTCGTGGTGCT GCTGCCGGAGACGCCGCCCGAAGGCGCCGTGGACGTGGCCGAGCGGATCC GCGATTCGATGGCCGGCAAGCCGCTGGTGTTCGACGGCAAGCAGGTCGCC TCGACGATCAGCATCGGCGTGGCGAGCTTTCCCGAGGACGGCCAGAGCAT GGACGCGATCGTGGGCCGCGCGGACCGCGCGCTCTACAAGGCCAAGAATG CCGGCCGCAACCGCGTGGAACGGTTCAAGCCGGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15862:1..438+

>mRNA_P-wetherbeei_contig15862.1.1 ID=mRNA_P-wetherbeei_contig15862.1.1|Name=mRNA_P-wetherbeei_contig15862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig15862:1..438+ (Phaeothamnion wetherbeei SAG_119_79)
AGGCTGTTCGGCCAGGCGCAGCGCTATTCCCGCGCCGCGAGCGTATTGAT
GATCGACTCGGACAACCTGAAGGCGGTCAACGACACCCACGGCCATGAAG
CGGGCAACCGGCTGCTGCGCCAGCTCGCGGAGCGCATCCAGGCCGAGCTG
CGCTACACCGACGTGCCGGCGCGCTACGGCGGGGACGAGTTCGTGGTGCT
GCTGCCGGAGACGCCGCCCGAAGGCGCCGTGGACGTGGCCGAGCGGATCC
GCGATTCGATGGCCGGCAAGCCGCTGGTGTTCGACGGCAAGCAGGTCGCC
TCGACGATCAGCATCGGCGTGGCGAGCTTTCCCGAGGACGGCCAGAGCAT
GGACGCGATCGTGGGCCGCGCGGACCGCGCGCTCTACAAGGCCAAGAATG
CCGGCCGCAACCGCGTGGAACGGTTCAAGCCGGACTGA
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