mRNA_P-wetherbeei_contig1586.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1586.3.2
Unique NamemRNA_P-wetherbeei_contig1586.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: A0A836CQU4_9STRA (Putative microtubule associated protein EB1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQU4_9STRA)

HSP 1 Score: 221 bits (563), Expect = 4.630e-67
Identity = 158/266 (59.40%), Postives = 191/266 (71.80%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGAPGATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETSAQVAADLAAKEERIAALTHEVSEMLAAHQTVERERDFYFEKLRDVEVLLQLREEHGHPVEGAADVFKILYAS 1010
            VGRREILEW+NGTL LNLS IE+TASGCVALQL+D+ +PG V + K++W+A+ D++F+ NYK+LQ +FDK  V KH+ VDK++RAKYQDNLEFMQWFKRY +  G A  YDPVAAR+ GKGAPGA+    PA+                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ++ +   T AQ                 EV+E+  A + +E+ERDFYFEKLRDVEVLLQLREE G PV+G  D+FKILYA+
Sbjct:   14 VGRREILEWLNGTLSLNLSKIEETASGCVALQLMDACYPGQVSIQKLNWSARNDYEFIQNYKLLQTAFDKFHVDKHIPVDKIVRAKYQDNLEFMQWFKRYVEITGPAPGYDPVAARSKGKGAPGASS-GQPAA-----------------RTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATSTSTELTRAQ----------------DEVAELKVAVEVLEKERDFYFEKLRDVEVLLQLREEQGKPVDGMQDIFKILYAT 245          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: F0WQF4_9STRA (Microtubule associated protein EB1 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQF4_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.490e-50
Identity = 114/285 (40.00%), Postives = 151/285 (52.98%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGA-------PGATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETSAQVA----ADLAAKEERIAA-------LTHEVSEMLAAHQTVERERDFYFEKLRDVEVLLQLREEHGHPVEGAADVFKILYASQ 1013
            VGR+EIL+WIN T   NL+ +EQT +G +A Q+LDS++PG VPMSKVDW+A +D++++ NYK+LQ  F  L + K+VDVD+LIR KYQDNLEFMQWFK++H+       YDPVA R  GKG         G T   AP+ A                                                    AP  ME+   V     A +  KE+++A        LT E  E+ AA   +E ERDFYF KLRD+E+LLQ  E+ G       D+FK+LYA++
Sbjct:   17 VGRKEILDWINQTCHTNLTKVEQTCTGAIACQILDSIYPGKVPMSKVDWSANKDYEYIQNYKVLQKCFTNLKIDKYVDVDRLIRGKYQDNLEFMQWFKKFHELNASGQSYDPVAQREKGKGGIQFSNKHRGGTSSIAPSPANIISNDLRRRNAGSHVARNSFPSRTRTNRPP--------------------GAPTAMESQNAVTMASTASIVEKEKQLAEFKAANALLTDENGELRAAVTGLETERDFYFGKLRDIEILLQNIED-GEQNALVQDLFKLLYATE 280          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: A0A7S3YCI0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCI0_HETAK)

HSP 1 Score: 172 bits (436), Expect = 7.450e-50
Identity = 79/121 (65.29%), Postives = 97/121 (80.17%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKG 575
            VGRREILEW+N  +  NLS IEQTA+G +A QLLD++HPG +PMSKV+W AKQD++F+ NYKILQ  FDK+G+ KHVDV KLIRA+YQDNLEFMQWFKRY +  G  + YD +  R+ GKG
Sbjct:   13 VGRREILEWLNECMNTNLSKIEQTATGAIACQLLDAVHPGQIPMSKVNWDAKQDYEFIDNYKILQRGFDKIGIDKHVDVQKLIRARYQDNLEFMQWFKRYFELNGPVSAYDVMGQRSKGKG 133          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: A0A024GNZ4_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GNZ4_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.770e-49
Identity = 115/285 (40.35%), Postives = 151/285 (52.98%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGAP-------GATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETSAQVA----ADLAAKEERIAA-------LTHEVSEMLAAHQTVERERDFYFEKLRDVEVLLQLREEHGHPVEGAADVFKILYASQ 1013
            VGR+EIL+WIN T   NL+ +EQT +G +A Q+LDSL+PG VPMSKVDW+A +D++++ NYK+LQ  F  L + K+VDVD+LIR KYQDNLEFMQWFK++++       YDPVA R  GKG         G T   AP+ A                                                    AP  ME+   V     A LA KE+++         LT E  E+ AA   +E ERDFYF KLRD+E+LLQ  E+ G       D+FK+LYA++
Sbjct:   17 VGRKEILDWINQTCHTNLTKVEQTCTGAIACQILDSLYPGKVPMSKVDWSANKDYEYIQNYKVLQKCFTNLKIDKYVDVDRLIRGKYQDNLEFMQWFKKFYELNATGLSYDPVAQREKGKGGVQFSNKHRGGTSSMAPSPASTTSHDLRRRNTGSCNIARNNLPSRTRTNRPP-------------------GAPVMMESQNVVTMANTASLAEKEKQLTEIKAANELLTDENGELRAAVTGLETERDFYFGKLRDIEILLQNIED-GEQNPLVQDLFKLLYATE 281          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: W7TMC3_9STRA (Microtubule-associated protein rp eb family member 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMC3_9STRA)

HSP 1 Score: 176 bits (446), Expect = 7.710e-49
Identity = 84/134 (62.69%), Postives = 107/134 (79.85%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGAPGATGCAAPASA 614
            VGR+EI++WIN TLQLNL+ +EQTASG VA QLLD ++PG VP++KV+W AK D++F+ NYK+LQ +F KL + KH+ V+KL+RAKYQDNLEFMQWFKR+++    A DYDPV ARAGGKGA G      PA+A
Sbjct:   46 VGRKEIVDWINETLQLNLTKVEQTASGAVACQLLDRIYPGKVPLNKVNWEAKLDYEFLSNYKLLQTAFTKLQIDKHLPVEKLVRAKYQDNLEFMQWFKRFYELNNPALDYDPVVARAGGKGAGGPARTIPPAAA 179          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: A0A6G0XJ14_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJ14_9STRA)

HSP 1 Score: 174 bits (441), Expect = 9.170e-49
Identity = 128/279 (45.88%), Postives = 173/279 (62.01%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQ-SVGMATDYDPVAARAGGKGAPGATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETS----AQVAADLAAKEERIAALTHEVSEMLAAH-------QTVERERDFYFEKLRDVEVLLQLREEHGHPVEGAADVFKILYASQ 1013
            VGR+EIL+WIN T  L+L+ +EQT +G VA QLLD+L+PG VPMSKVDW+A +D++++ NYK+LQ +F  L + +H++VDKLIR KYQDNLEFMQWFKR+++ ++G A+DYDP+A R  GKG     G A  A  R    XXXXXXXXXXXXXXXXX                              AP  +E      A+  +D AA +E +   T E  E+  A+       + +E+ERDFYF KLRD+E +LQ  +E  H  +    +F+ILYA++
Sbjct:   17 VGRKEILDWINSTCGLSLTKVEQTCTGAVACQLLDALYPGKVPMSKVDWSANKDYEYIQNYKVLQKAFTTLKIDRHIEVDKLIRGKYQDNLEFMQWFKRFYELNIGGASDYDPIAQRDKGKG-----GAAYSAKYRPGGGXXXXXXXXXXXXXXXXXRPVGTKPSARPP-----------------GAPTSVEKEKAGGARRTSDSAASKE-LEEFTRENEELSEANGILRGQIEGLEKERDFYFGKLRDIEAMLQELDESQH-TDVIKKIFEILYAAE 271          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: A0A0P1A9J2_PLAHL (Microtubule associated protein eb1 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1A9J2_PLAHL)

HSP 1 Score: 174 bits (442), Expect = 9.810e-49
Identity = 122/281 (43.42%), Postives = 169/281 (60.14%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGAP------GATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETSAQVAADLAAKEERIA-------ALTHEVSEMLAAHQTVERERDFYFEKLRDVEVLLQLREE-HGHPVEGAADVFKILYASQ 1013
            VGR+EIL+WIN    ++LS +EQT +G VA Q+LD+++PG V MSKVDW+A +D++++ NYK+LQ +F +L + KHV+VD+L+R KYQDNLEFMQWFK +++       YDPVA R  GKG        G T  A PA                            XXXXXXXXXXXXXX         + +A   ++T A VAA  A  E+ +        ALT+E  E+ A  +++E+ERDFYF KLR+VE++LQ  E    +P+  A  +FK+LYA++
Sbjct:   15 VGRKEILDWINTLCGISLSKVEQTCTGAVACQILDAMYPGKVQMSKVDWSANKDYEYIQNYKVLQKAFMQLKIDKHVEVDRLVRGKYQDNLEFMQWFKAFYERNASGQPYDPVAQREKGKGGAQYTQKYGGTSAAGPA--------VPLRRKVGAATTSRVGRTPPXXXXXXXXXXXXXXASRRPIGTTTMTAQIEVDTEAAVAAATAPLEKELEELTATNEALTNEGGELRAMVESLEKERDFYFNKLREVEIMLQSAENSEANPL--AQSIFKVLYATE 285          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: H3GGV9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGV9_PHYRM)

HSP 1 Score: 174 bits (440), Expect = 1.650e-48
Identity = 107/281 (38.08%), Postives = 156/281 (55.52%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGAP------GATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETSAQVAADLAAKEERIA-------ALTHEVSEMLAAHQTVERERDFYFEKLRDVEVLLQLREE-HGHPVEGAADVFKILYASQ 1013
            VGR+EIL+WIN     NL+ +EQT +G VA Q+LD+++PG V MSKVDW A +D++++ NYK+LQ +F +L + KHV+VD+L+R KYQDNLEFMQWFK +++       YDP++ R  GKG        G +G ++ A A                                                 S  A + ++T A VAA  A  E+ +        ALT+E  E+ A  +++E+ERDFYF KLR+VE++LQ  E+   +P+  A  VFK+LYA++
Sbjct:   10 VGRKEILDWINNLCATNLAKVEQTCTGAVACQILDAMYPGKVQMSKVDWAANKDYEYIQNYKVLQKAFMQLKIDKHVEVDRLVRGKYQDNLEFMQWFKAFYERNASGQSYDPLSQRDKGKGGAQFTQKFGGSGVSSSAPAAPARRKVGAATTSRVGRTPPAAPAAARASRTPTGVSRRPTG--------SAGAVSAVDTEAAVAAATAPLEKELEELTTTNEALTNESGELRAMVESLEKERDFYFNKLREVEIMLQAAEDTESNPL--AQAVFKVLYAAE 280          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: D7FHD5_ECTSI (Putative microtubule-associated protein EB1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD5_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.820e-48
Identity = 144/266 (54.14%), Postives = 180/266 (67.67%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGAPGATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETSAQVAADLAAKEERIAALTHEVSEMLAAHQTVERERDFYFEKLRDVEVLLQLREEHGHPVEGAADVFKILYAS 1010
            VGR+EIL+W+N  L LNLS +E+T SG VA QL+DSL PG VPMSKV+W A+ D +++ NYK+LQ++FD+L + KH+DV +L R KY DNLEFMQWFK +H + G    YD V  R+ G+G  GA          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SR+APA   +SA+  +       +   LT E  E+L     VE+ERDFYF+KLRD+E+L Q  E+     +   + FKILYA+
Sbjct:   14 VGRKEILDWLNSYLSLNLSKVEETCSGAVACQLVDSLFPGKVPMSKVNWDARNDSEYINNYKVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQWFKNFHDTTGAMEGYDAVERRSKGRG--GAK------YGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPASSTLKSRAAPA--RSSARAPSPDPQLVAKCDELTQERDELLTTMAAVEKERDFYFDKLRDIELLFQNDEQESGESDLTKNAFKILYAT 269          
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Match: D0NQL6_PHYIT (Microtubule-associated protein EB1 n=11 Tax=Phytophthora TaxID=4783 RepID=D0NQL6_PHYIT)

HSP 1 Score: 172 bits (437), Expect = 6.700e-48
Identity = 105/282 (37.23%), Postives = 153/282 (54.26%), Query Frame = 3
Query:  213 VGRREILEWINGTLQLNLSTIEQTASGCVALQLLDSLHPGSVPMSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEFMQWFKRYHQSVGMATDYDPVAARAGGKGAP-------GATGCAAPASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSAPAGMETSAQVAADLAAKEERIA-------ALTHEVSEMLAAHQTVERERDFYFEKLRDVEVLLQLREEH-GHPVEGAADVFKILYASQ 1013
            VGR+EIL+WIN    +NLS +EQT +G VA Q+LD+++PG V MSKVDW A +D++++ NYK+LQ +F +L + KHV+VD+L+R KYQDNLEFMQWFK +++       YDP+A R  GKG         G    + PA+                                                XX    P+  +T A      A  E+ +        ALT+E  E+ A  +++E+ERDFYF KLR+VE++LQ  E++  +P+  A  +FK+LYA++
Sbjct:   15 VGRKEILDWINSLCAINLSKVEQTCTGAVACQILDAMYPGKVQMSKVDWAANKDYEYIQNYKVLQKAFMQLKIDKHVEVDRLVRGKYQDNLEFMQWFKAFYERNASGQPYDPIAQREKGKGGAQYTQKFGGGASSSTPAAPLRRKVGATATSRVGRTPPGAPTSAGAARTARTSTGATRRPVGSAASAXXXXXXPSEADTEAXXXXXXAPLEKELEELTANNEALTNESGELRAMVESLEKERDFYFNKLREVEIMLQAAEDNESNPL--AQAIFKVLYATE 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1586.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CQU4_9STRA4.630e-6759.40Putative microtubule associated protein EB1 n=1 Ta... [more]
F0WQF4_9STRA1.490e-5040.00Microtubule associated protein EB1 putative n=1 Ta... [more]
A0A7S3YCI0_HETAK7.450e-5065.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024GNZ4_9STRA1.770e-4940.35Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
W7TMC3_9STRA7.710e-4962.69Microtubule-associated protein rp eb family member... [more]
A0A6G0XJ14_9STRA9.170e-4945.88Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0P1A9J2_PLAHL9.810e-4943.42Microtubule associated protein eb1 n=2 Tax=Peronos... [more]
H3GGV9_PHYRM1.650e-4838.08Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D7FHD5_ECTSI2.820e-4854.14Putative microtubule-associated protein EB1 n=2 Ta... [more]
D0NQL6_PHYIT6.700e-4837.23Microtubule-associated protein EB1 n=11 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1586contigP-wetherbeei_contig1586:4958..6929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI42535
PFAMsCH,EB1
Model size1014
Max annot lvl4776|Peronosporales
KEGG koko:K10436
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.38e-33
EggNOG OGsCOG5217@1|root,KOG3000@2759|Eukaryota,3Q8AI@4776|Peronosporales
DescriptionEB1-like C-terminal motif
Cds size672
COG categoryZ
BRITEko00000,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1586.3.2prot_P-wetherbeei_contig1586.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1586 5432..6929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.5492895-UTR-P-wetherbeei_contig1586:4957..50351683186069.5492895-UTR-P-wetherbeei_contig1586:4957..5035Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1586 4958..5035 +
1683186069.55873-UTR-P-wetherbeei_contig1586:5168..54311683186069.55873-UTR-P-wetherbeei_contig1586:5168..5431Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1586 5169..5431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.5680933-CDS-P-wetherbeei_contig1586:5431..55271683186069.5680933-CDS-P-wetherbeei_contig1586:5431..5527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1586 5432..5527 +
1683186069.5773299-CDS-P-wetherbeei_contig1586:5673..57741683186069.5773299-CDS-P-wetherbeei_contig1586:5673..5774Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1586 5674..5774 +
1683186069.5861878-CDS-P-wetherbeei_contig1586:5892..61581683186069.5861878-CDS-P-wetherbeei_contig1586:5892..6158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1586 5893..6158 +
1683186069.5978532-CDS-P-wetherbeei_contig1586:6420..65601683186069.5978532-CDS-P-wetherbeei_contig1586:6420..6560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1586 6421..6560 +
1683186069.605908-CDS-P-wetherbeei_contig1586:6860..69291683186069.605908-CDS-P-wetherbeei_contig1586:6860..6929Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1586 6861..6929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1586.3.2

>prot_P-wetherbeei_contig1586.3.2 ID=prot_P-wetherbeei_contig1586.3.2|Name=mRNA_P-wetherbeei_contig1586.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MSKVDWTAKQDFQFVGNYKILQNSFDKLGVGKHVDVDKLIRAKYQDNLEF
MQWFKRYHQSVGMATDYDPVAARAGGKGAPGATGCAAPASARGPAPRRGM
APAGATRTAAGRGTTIKRAPAGSAAVAGAAGAAAATAPAASRSAPAGMET
SAQVAADLAAKEERIAALTHEVSEMLAAHQTVERERDFYFEKLRDVEVLL
QLREEHGHPVEGAADVFKILYASQ
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mRNA from alignment at P-wetherbeei_contig1586:4958..6929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1586.3.2 ID=mRNA_P-wetherbeei_contig1586.3.2|Name=mRNA_P-wetherbeei_contig1586.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1972bp|location=Sequence derived from alignment at P-wetherbeei_contig1586:4958..6929+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCAGCAGCCACCGACAGTTAGCCCAGCGTCGAGAAAGATGGCAGCGAA GAATGAATCCTTCGGCATGATGGATGGGGCAAGTTTTCTCTTGCTCTCCC CCTACACTTTTTGGACGCTCTCTCAACTTTCCTCTTCACCAACTCCGCTG CCCTTGCTCTTGTTTCCCGGCATGTACTGCGCAACGGCGTTCGTCGGCGT CCTATGCGTAGGCGTACTTTGGTAAGAGGGTTTCCCGTTATTTTGCACAG CCGGCATTGGGCGTCTTTGCAATCGTTGTCTTTGCGGCTGGCACGGGAGA AGTAATCCGCACTTACTGCGCCCTCTGCTTGGTCGGCCTTTGGCAGTGGG GAGGCGCGAAATTCTGGAATGGATCAATGGTACGCTGCAGCTCAACCTGT CGACCATTGAGCAGACGGCCTCCGGCTGCGTGGCGCTCCAGCTGCTAGAC TCGCTGCACCCGGGCAGCGTGCCCATGAGCAAAGTGGACTGGACGGCGAA GCAGGACTTTCAGTTTGTGGGCAACTACAAGATCCTCCAGAACTCCTTCG ACAAGCTTGGCGTCGGCAAGGTATAGTGTCATTCTCAACAAGAAGAGAAT GATATTAACCTTAGCTCCACATTTCGGTTTTTGTCGTTGAAAATGTCGCT GTTGCCTGTGATTTCCCTCCTCATCACATTTTCTAATTTCCCACTTTTCC CTCCTGACACCGGCAGCACGTGGACGTGGACAAGTTAATCCGTGCCAAGT ACCAGGACAACCTCGAATTCATGCAGTGGTTCAAACGCTACCACCAGAGC GTCGGCATGGCCACAGAGTGAGTGCACGTCGCAGCGTTGCGCGTGTATTA CTGCTTGTGTTTGCACCCGGCTGTTCGAAACATCGCGCTAGCTTCCATCG CTTTCCTTCCAACAAATCTCCAAAAATCTTTACAGCTATGATCCCGTGGC TGCGCGGGCCGGAGGCAAGGGCGCGCCAGGGGCCACGGGCTGCGCGGCGC CAGCCTCTGCAAGGGGCCCGGCACCGCGGCGCGGGATGGCGCCCGCCGGC GCAACCAGGACCGCCGCGGGGCGAGGAACAACCATCAAGCGGGCCCCGGC GGGGAGTGCAGCTGTGGCGGGAGCGGCGGGGGCTGCGGCCGCGACGGCGC CGGCCGCGAGCCGGAGCGCACCTGCAGGCATGGAGACGTCTGCACAAGTG GGTGAGTCTTTGTCGTTTGAGTGGCGCCGCTCTTTTTTGGATTGTCCTTA GGAGTGGGATGGAGCTACGGTTCCGGCCACCTGATGATTCTTTGAGTTTA TTCTTTTGTGAAAACCGTGCTACCAAGCTTCGCGTGAGTTCCAGAAGATG TTGCTCAAGAATTTATGTGAAGAGGGCAAGGCTCCTTTCTTTTCGCTCTT TACTTCCTTTCTCACTCTCCTCTAAAATGGACTTGACCTCGCATGCGCAT CGACGGGAAGCAGCGGCGGACCTGGCGGCGAAGGAGGAGCGCATCGCCGC GCTGACCCACGAGGTGTCGGAGATGCTCGCGGCCCACCAGACGGTCGAGC GCGAGCGCGACTTCTACTTCGAGAAGCTGCGGGATGTCGAAGTCCTCCTC CAGGTCAGGGAGAGGCGGCGAAGCGGCTTTGTAACGTGTGATGCAGGTGT TCCTTTCTCCATACGGTGTGCCTGGGGCGGAATGCTAAAGGACGGCGGAG GGGGCTGCCATGCCGTCGGGAGGCAAGTGAGCTGGTGCCACGATTGTTGA GCAACCCTCTAGGTTTGGTAGATTTGTGCAGTCGGCAGTATGTCGAACGA TGGACGGCTCGATTGCTTTGATCTTTTTTGGAAGGTTTGGTTTTGATAAG TTTCGACTTCGCTCATCCTTTCTGCGCATGCGCCGCTTTGCTCGATCGAA CAGCTGCGGGAGGAGCACGGACACCCCGTCGAAGGAGCGGCCGACGTCTT CAAGATTCTTTACGCCAGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1586:4958..6929+

>mRNA_P-wetherbeei_contig1586.3.2 ID=mRNA_P-wetherbeei_contig1586.3.2|Name=mRNA_P-wetherbeei_contig1586.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig1586:4958..6929+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAAAGTGGACTGGACGGCGAAGCAGGACTTTCAGTTTGTGGGCAA
CTACAAGATCCTCCAGAACTCCTTCGACAAGCTTGGCGTCGGCAAGCACG
TGGACGTGGACAAGTTAATCCGTGCCAAGTACCAGGACAACCTCGAATTC
ATGCAGTGGTTCAAACGCTACCACCAGAGCGTCGGCATGGCCACAGACTA
TGATCCCGTGGCTGCGCGGGCCGGAGGCAAGGGCGCGCCAGGGGCCACGG
GCTGCGCGGCGCCAGCCTCTGCAAGGGGCCCGGCACCGCGGCGCGGGATG
GCGCCCGCCGGCGCAACCAGGACCGCCGCGGGGCGAGGAACAACCATCAA
GCGGGCCCCGGCGGGGAGTGCAGCTGTGGCGGGAGCGGCGGGGGCTGCGG
CCGCGACGGCGCCGGCCGCGAGCCGGAGCGCACCTGCAGGCATGGAGACG
TCTGCACAAGTGGCGGCGGACCTGGCGGCGAAGGAGGAGCGCATCGCCGC
GCTGACCCACGAGGTGTCGGAGATGCTCGCGGCCCACCAGACGGTCGAGC
GCGAGCGCGACTTCTACTTCGAGAAGCTGCGGGATGTCGAAGTCCTCCTC
CAGCTGCGGGAGGAGCACGGACACCCCGTCGAAGGAGCGGCCGACGTCTT
CAAGATTCTTTACGCCAGCCAG
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