mRNA_P-wetherbeei_contig15842.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15842.1.1
Unique NamemRNA_P-wetherbeei_contig15842.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: A0A7S2UX35_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX35_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.720e-24
Identity = 66/203 (32.51%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESLKSNLYEGFEDIFWPGKTAS------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETSATAAAVTPPRRLRYFVSLVNESIIKRGIFWRLRKLHKAAVLLWAGAGVLSRRARHRARAILLREMNGGGLVLFNEV 591
            E + N R L++V+G+ IKPGR+ RTGF S AT+ DV+  L+++G++T++DLRS  E+  D+  + +++E F+ + W            +                                  KE   T  A    R   YF+SL+NES+ K+G+  RL    KAA +++    V+S RA  RAR+++L+++N GGL L NE+
Sbjct:   66 ENVKNCRDLANVKGSPIKPGRVLRTGFLSNATSKDVKNLLEKLGLKTVIDLRSPREID-DDKHEGSIFESFQSVDWTEDQQRRKWERRSKRSRAKYLVQRAAMELQGKAAAWNYRKKMSEKREKEREETMRAKASQR---YFISLMNESLYKKGVISRLGNRQKAAAVMYLAGAVVSTRAYKRARSLVLKKVNEGGLGLLNEL 264          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: D7FT91_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT91_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.080e-22
Identity = 76/200 (38.00%), Postives = 97/200 (48.50%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESLKSNLYEGFEDIFW---PGKTASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETSATAAAVTPPRRLRYFVSLVNESIIKRGIFWRLRKLHKAAVLLWAGAGVLSRRARHRARAILLREMNGGGLVLFNEV 591
            E + N+R LSSV+G  I  GR++RTG  S AT  D +           VDLRS  EL  DE +  ++YEGF ++      G   S                               XXXX                 YFVSL++ESI K+G+F RLR+ HKAAVL  A A ++SRR   +AR I LRE+N GGLVL NE+
Sbjct:  209 EGVQNIRDLSSVEGYGIVAGRVFRTGHLSAATERDAKTXXXXXXXXXXVDLRSATELGHDELIHGDVYEGFVNVGGGDHSGTGVSQGPAWDEAIQGESNDALPVQGKVGGASAGAGXXXXXXXXXXXXXXXXXXXXXYFVSLIDESIYKKGVFQRLRRRHKAAVLALAPATMVSRRCTQKARGIFLREINAGGLVLLNEL 408          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: A0A836CH30_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH30_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.470e-16
Identity = 59/197 (29.95%), Postives = 98/197 (49.75%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESLKSNLYEGFEDIFWPGKTASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETSATAAAVTPPRRLRYFVSLVNESIIKRGIFWRLRKLHKAAVLLWAGAGVLSRRARHRARAILLREMNGGGLVLFNEV 591
            E++ N R +++     +KPGRL+RTGFPS++T +D++L+   I I T++DLRS +EL MD  + S +Y  +E +    +++ +                                   E   TA   TP ++ R+ +SL++E     G+  +   + KA ++   GA  +SRRAR  A  +LL  +  GGL L NE+
Sbjct:   50 EKVRNFRDIATACPGLLKPGRLYRTGFPSESTPSDLKLW-SAIDISTLIDLRSPKELGMDTLMHSPVYAPYETVDLNQESSGSWRQAVLST---------------------------EVETTAEDFTPTKQ-RFLLSLIDERKYVSGLVLQAEIIDKAWLVALIGASAVSRRARAHATEVLLERIKAGGLPLLNEM 217          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: A0A448ZIR0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIR0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.590e-13
Identity = 55/211 (26.07%), Postives = 92/211 (43.60%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESLKSNLYEGFEDIFW--PGKTASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKET------------SATAAAVTPPRRLRYFVSLVNESIIKRGIFWRLRKLHKAAVLLWAGAGVLSRRARHRARAILLREMNGGGLVLFNEV 591
            E + N R L+    ++I PGR++RTG    A+  D +L  +++GI T+VDLRS  EL  D++L +  ++GF ++ W   G+                                       E             +  A   +  R  R+FVSL+NE    RG   ++RK   A  ++ A    LS+R  +  +   + E+N GGL++ N++
Sbjct:  100 ESVKNCRDLACTSSSSILPGRIFRTGRLGDASEKDRELLFKDLGISTLVDLRSPTELRDDDALMAECFDGFTNLVWIENGRRRDGCVRELAAGVSPVEKARKLRLSKKQLDASDDLAAEDEMCEVGCDDPLTLPAERALTKSKDRNERHFVSLMNEFKYVRGTVTKVRKRDIAKAIIKAPGAFLSKRIWNSLKEPFITEINSGGLIMLNDL 310          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: A0A7S2I2F6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I2F6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.120e-10
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESL-KSNLYEGFEDIFW 228
            ++I N R +SSV  +  KPGR+ R G PS A+ +D+ L L+E+GI+T+VDLRS  EL  D +L +  L+E F  + W
Sbjct:  120 DEIKNARDISSVAHSPAKPGRVLRMGRPSDASPSDIDLLLEELGIKTLVDLRSPTELKDDPTLERKELFEDFVSLVW 196          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: B8BVJ2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVJ2_THAPS)

HSP 1 Score: 68.2 bits (165), Expect = 5.110e-10
Identity = 69/225 (30.67%), Postives = 107/225 (47.56%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESL-KSNLYEGFEDIFW--PGK-------------------------TASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETSATAAAVTPPRRLRYFVSLVNESIIKRGIFWRLRKLHKAAVLLWAGAGVLSRRARHRARAILLREMNGGGLVLFNEV 591
            E++ N R L+SV  + I PG+++R G  S AT  D+ +   +IG++T+VDLRS  EL  D +L +  ++  F D+ +   GK                         + +                     XXXXXXXXXXXX   E     +A    R+ R+FVS++NE    RG   ++RK   A  ++ +   ++S+ AR   +   L E+NGGGL + NE+
Sbjct:   54 EKVKNARDLASVCNSPILPGKVFRIGRVSDATEKDLDILFGQIGVKTLVDLRSPTELKDDPTLEREEVFGNFTDMVYYESGKLVKELGPEEKRMQRKRKRDRVREAVSGARKNTHDVVVGFVDNFFGGEEGXXXXXXXXXXXXIAAEKLLQDSARRRNRKERHFVSIMNEVKYVRGTLSKVRKRDIAKTIIKSPTAIISKTARENIKKPFLDEINGGGLPMLNEL 278          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: W7TPH7_9STRA (Tyrosine-protein phosphatase family, C-terminal domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPH7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.310e-9
Identity = 29/66 (43.94%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESLKSN 198
            E++ N+R LSSV+G+ IK GR++RTG+ SKA+  D++   +    +T++DLRS++EL MD+ + S+
Sbjct:  130 ERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQMNSS 195          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: A0A7S2XMM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMM4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.680e-8
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESLKS-NLYEGFEDIFW 228
            E++ N R L+SV+ + IK GRL R G  S A+  D+Q+  QE+G++T+VDLRS  EL  D +L++  +++ F    W
Sbjct:   98 EKVKNARDLNSVKNSPIKAGRLIRLGRVSDASEVDIQILFQELGVKTLVDLRSPTELKDDPTLENPKVFDNFTSFVW 174          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: A0A7S1Z3K4_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3K4_TRICV)

HSP 1 Score: 56.6 bits (135), Expect = 4.860e-7
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    1 EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFL----QEIGIRTMVDLRSDEELFMDESL-KSNLYEGFEDIFW 228
            E++ N R L+S  G+ ++PGRL+R G  S ATA+D+ L         G++T VDLRS  EL  D +L +  ++  F  I W
Sbjct:   42 EKVKNARDLASASGSPVRPGRLYRMGRVSDATASDLALLFGVGDDGTGVKTFVDLRSPTELRDDPTLERPEVFGNFTSIVW 122          
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Match: A0A7S3Q2B1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2B1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.290e-5
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    4 QISNVRCLSSV----QGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVDLRSDEELFMDESL-KSNLYEGFEDIFW 228
            +I N R L+S     +   I+P RL+RTG  S AT  D+ L   E+GIRT+VDLRS  EL  D +L +  ++  + ++ W
Sbjct:   85 KIKNARDLASAVNSNENNPIQPNRLFRTGRVSDATTEDIHLLHDELGIRTLVDLRSPTELKDDMTLDREEVFGDYTNLIW 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15842.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S2UX35_9STRA5.720e-2432.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FT91_ECTSI1.080e-2238.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CH30_9STRA1.470e-1629.95Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A448ZIR0_9STRA4.590e-1326.07Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2I2F6_9STRA4.120e-1045.45Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B8BVJ2_THAPS5.110e-1030.67Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
W7TPH7_9STRA1.310e-943.94Tyrosine-protein phosphatase family, C-terminal do... [more]
A0A7S2XMM4_9STRA3.680e-841.56Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1Z3K4_TRICV4.860e-739.51Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A7S3Q2B1_9STRA2.290e-540.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15842contigP-wetherbeei_contig15842:641..1480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FT91
PFAMsY_phosphatase3
Model size591
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.77e-23
EggNOG OGs2AP1J@1|root,2RZFS@2759|Eukaryota
Ec32 ortholog descriptionTyrosine/serine-protein phosphatase IphP-type
Ec32 orthologEc-06_003660.1
DescriptionPfam:Y_phosphatase3C
Cds size591
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.23818-CDS-P-wetherbeei_contig15842:640..7701683186069.23818-CDS-P-wetherbeei_contig15842:640..770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15842 641..770 +
1683186069.2487004-CDS-P-wetherbeei_contig15842:905..11571683186069.2487004-CDS-P-wetherbeei_contig15842:905..1157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15842 906..1157 +
1683186069.2610567-CDS-P-wetherbeei_contig15842:1271..14801683186069.2610567-CDS-P-wetherbeei_contig15842:1271..1480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15842 1272..1480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15842.1.1prot_P-wetherbeei_contig15842.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15842 641..1480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15842.1.1

>prot_P-wetherbeei_contig15842.1.1 ID=prot_P-wetherbeei_contig15842.1.1|Name=mRNA_P-wetherbeei_contig15842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
EQISNVRCLSSVQGAAIKPGRLWRTGFPSKATANDVQLFLQEIGIRTMVD
LRSDEELFMDESLKSNLYEGFEDIFWPGKTASAAAAAVAVAEAAAGAAAA
AAEAAAATATETETAAAKETSATAAAVTPPRRLRYFVSLVNESIIKRGIF
WRLRKLHKAAVLLWAGAGVLSRRARHRARAILLREMNGGGLVLFNEV
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mRNA from alignment at P-wetherbeei_contig15842:641..1480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15842.1.1 ID=mRNA_P-wetherbeei_contig15842.1.1|Name=mRNA_P-wetherbeei_contig15842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig15842:641..1480+ (Phaeothamnion wetherbeei SAG_119_79)
GAACAGATCTCCAACGTGCGTTGCTTGAGCAGCGTCCAGGGGGCAGCCAT CAAGCCCGGCCGCCTTTGGAGGACTGGGTTCCCAAGCAAAGCAACAGCAA ACGATGTACAGCTATTCCTCCAGGAAATTGGTAAGCAAGGTAGTAAAGCG GCTGCTGGCTGTCAATTGCATTCGAGCGACTTTTTGTACGAAATGCAACG TTTTGCCCATGATGCTTGCTCATTATGCTCTCGCATTCATTTTCCTCGCA ACTGGCCGCAACCAGGAATAAGGACGATGGTGGACCTTCGCAGTGACGAA GAACTTTTTATGGATGAAAGCCTCAAGTCCAACCTGTACGAGGGTTTCGA GGACATCTTCTGGCCGGGCAAGACGGCGTCTGCCGCTGCCGCGGCAGTAG CGGTGGCGGAGGCAGCCGCAGGAGCAGCTGCAGCGGCGGCGGAGGCGGCG GCGGCAACGGCGACAGAAACAGAAACAGCTGCGGCGAAAGAGACATCAGC CACAGCAGCGGCGGTGAGTGCAGCGGTGCTGTCTGCGCCAGCGAATAGTA GTACTACCTGCGCTGCTGCTGCGGCGACAACTGCCGAGGCAGTTCTGGAG GCGGGCGACTGCGCGGCGCCGCCGTCGCCAGCGCCGCCGCGGCGGCTGCG ATACTTTGTCTCACTGGTCAACGAATCGATTATCAAACGCGGCATCTTCT GGCGGCTCCGCAAGTTGCACAAGGCCGCCGTGCTGCTGTGGGCCGGCGCC GGCGTGCTCTCGCGCCGCGCCCGCCACCGTGCACGTGCCATCTTGCTGCG GGAAATGAACGGCGGCGGGCTCGTGCTCTTCAACGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15842:641..1480+

>mRNA_P-wetherbeei_contig15842.1.1 ID=mRNA_P-wetherbeei_contig15842.1.1|Name=mRNA_P-wetherbeei_contig15842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig15842:641..1480+ (Phaeothamnion wetherbeei SAG_119_79)
GAACAGATCTCCAACGTGCGTTGCTTGAGCAGCGTCCAGGGGGCAGCCAT
CAAGCCCGGCCGCCTTTGGAGGACTGGGTTCCCAAGCAAAGCAACAGCAA
ACGATGTACAGCTATTCCTCCAGGAAATTGGAATAAGGACGATGGTGGAC
CTTCGCAGTGACGAAGAACTTTTTATGGATGAAAGCCTCAAGTCCAACCT
GTACGAGGGTTTCGAGGACATCTTCTGGCCGGGCAAGACGGCGTCTGCCG
CTGCCGCGGCAGTAGCGGTGGCGGAGGCAGCCGCAGGAGCAGCTGCAGCG
GCGGCGGAGGCGGCGGCGGCAACGGCGACAGAAACAGAAACAGCTGCGGC
GAAAGAGACATCAGCCACAGCAGCGGCGGTGACGCCGCCGCGGCGGCTGC
GATACTTTGTCTCACTGGTCAACGAATCGATTATCAAACGCGGCATCTTC
TGGCGGCTCCGCAAGTTGCACAAGGCCGCCGTGCTGCTGTGGGCCGGCGC
CGGCGTGCTCTCGCGCCGCGCCCGCCACCGTGCACGTGCCATCTTGCTGC
GGGAAATGAACGGCGGCGGGCTCGTGCTCTTCAACGAGGTG
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