mRNA_P-wetherbeei_contig15830.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15830.3.1
Unique NamemRNA_P-wetherbeei_contig15830.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15830.3.1 vs. uniprot
Match: A0A835ZK92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK92_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.980e-8
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:  253 VSVAYDGIVALGVPIGTEAYVRRQLNQRLCGGDAGKLLERLVLLDDVQGAFALLRLSGAPRPIYNARTVPPSAAAPEFELFDALTAWVLATL 528
            V V  DGI  +GVP+GTE +VR Q+   L      +L+  LV ++DVQ AF++LRL+   R  + +R   PS    E   FDA+T   +A L
Sbjct:  516 VPVCDDGITLMGVPVGTEGFVRAQVAATLRAPGTDRLVAELVQMEDVQAAFSILRLAVPARAGHVSRNTAPSLTHEELRRFDAITLAAVAAL 607
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BLAST of mRNA_P-wetherbeei_contig15830.3.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.290e-8
Identity = 54/185 (29.19%), Postives = 86/185 (46.49%), Query Frame = 1 
Query:  199 PDDKRLCEEDSRILRQLRVSVAYDGIVALGVPIGTEAYVRRQLNQRLCGGDAGKLLERLVLLDDVQGAFALLRLSGAPRPIYNARTVPPSAAAPEFELFDALTAWVLATLIWRNDPLHSDIEVPSFADFVSNPDVSRLPFTPTQLAQARLPARLCGLGVMSASAISPAAFVASMAGAIPKILARL 753
            P    + ++  R+L  + ++VA +GI  +GVPIGT+ YVR    + +  G A KL   L L+ D Q A  +  LS   R  Y  R + P+      E  D +  W L T +       ++ E   F     + D+   P+   Q AQ +L     GLGV SA     +A + ++   +P+++A L
Sbjct:  817 PPGHMITDQQRRLLEGVGLTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLDNMVQWALETGMGIEG---TESEEEFFQQGCQDTDLKLRPY---QRAQTQLSTGAGGLGVSSAVMRRFSASLGNLISTLPEVIASL 995
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BLAST of mRNA_P-wetherbeei_contig15830.3.1 vs. uniprot
Match: A0A1Q9DW34_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DW34_SYMMI)

HSP 1 Score: 61.6 bits (148), Expect = 3.480e-7
Identity = 59/172 (34.30%), Postives = 80/172 (46.51%), Query Frame = 1 
Query:  271 GIVALGVPIGTEAYVRRQLNQRLCGGDA-GKLLERLVLLDDVQGAFALLRLSGAPRPIYNARTVPPSAAAPEFELFDALTAWVLATLIWRNDPLHSDIEVPSFADFVSNPDVSRLPFTPTQLAQARLPARLCGLGVMSASAISPAAFVASMAGAIPKILARLPPLQAEALRD 783
            G VALGVPIG   +V+ Q   RL   DA   LL +LV L DVQ A+ LL    APR  +  R VPP+   P     D     V+  L+    P   +       D+ +   V            A LP  L GLG+ +A  +SPAA+ A+ A A+P +  R P   A  +++
Sbjct:   56 GFVALGVPIGHPDFVKAQAANRL---DAEADLLRQLVQLPDVQCAWLLLAFCAAPRAQHLLRNVPPADILPYARGHDDAVWAVVEGLLGDQGPGEGE-------DWAAARQV------------AFLPPSLGGLGLFAAERVSPAAYWAAWADALPVLRQRYPEAAARLVQE 205
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BLAST of mRNA_P-wetherbeei_contig15830.3.1 vs. uniprot
Match: A0A812P1S3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812P1S3_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 1.990e-5
Identity = 49/162 (30.25%), Postives = 72/162 (44.44%), Query Frame = 1 
Query:  271 GIVALGVPIGTEAYVRRQLNQRLCGGDAGKLLERLVLLDDVQGAFALLRLSGAPRPIYNARTVPPSAAAPEFELFDALTAWVLATLIWRNDPLHSDIEVPSFADFVSNPDVSRLPFTPTQLAQARLPARLCGLGVMSASAISPAAFVASMAGAIPKILARLP 756
            GIV LG P+G++ +VR QL  +    D  +LLE +  L D+Q A+ LL    A R  +  R +PP + A   E  DA     L  L++ ++                       P  P       LP R  GLG+ SA+  + +A+ AS   ++P I  R P
Sbjct: 1066 GIVVLGAPLGSDEFVRCQLQAKRQAHD--RLLECIPGLGDLQAAWLLLHFCAATRANFLLRMLPPVSTAEFAEAHDAAVTRCLGRLLYGDEGA---------------------PIPPAAWRVLHLPLRFGGLGLRSAAEAAQSAWWASWFDSLPAIRVRAP 1204
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BLAST of mRNA_P-wetherbeei_contig15830.3.1 vs. uniprot
Match: A0A7S4DE18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE18_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 4.830e-5
Identity = 48/166 (28.92%), Postives = 77/166 (46.39%), Query Frame = 1 
Query:  259 VAYDGIVALGVPIGTEAYVRRQLNQRLCGGDAGKLLERLVLLDDVQGAFALLRLSGAPRPIYNARTVPPSAAAPEFELFDALTAWVLATLIWRNDPLHSDI--EVPSFADFVSNPDVSRLPFTPTQLAQARLPARLCGLGVMSASAISPAAFVASMAGAIPKILAR 750
            V+Y+GI+ LGVP GT+A++ R+L++      + +LL+ +  LDD Q A  +LR+S APR ++  R +P             L +  L   + ++D   +D    +    D   N           Q AQ  LP RL G G++S      A +  S  G +  +  R
Sbjct: 1214 VSYEGILHLGVPFGTDAFIDRELDK--IARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMP-------------LYSEQLVDHLVQHDRRVADTLTHILGLVDLTDN-----------QRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1353
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15830.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZK92_9STRA2.980e-840.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JH58_9PHAE4.290e-829.19Reverse transcriptase domain-containing protein n=... [more]
A0A1Q9DW34_SYMMI3.480e-734.30Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]
A0A812P1S3_9DINO1.990e-530.25Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S4DE18_HETAK4.830e-528.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15830contigP-wetherbeei_contig15830:254..1054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size791
Hectar predicted targeting categoryother localisation
Exons2
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.7010155-CDS-P-wetherbeei_contig15830:253..3381683186068.7010155-CDS-P-wetherbeei_contig15830:253..338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15830 254..338 +
1683186068.7126641-CDS-P-wetherbeei_contig15830:350..10541683186068.7126641-CDS-P-wetherbeei_contig15830:350..1054Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15830 351..1054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15830.3.1prot_P-wetherbeei_contig15830.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15830 254..1054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15830.3.1

>prot_P-wetherbeei_contig15830.3.1 ID=prot_P-wetherbeei_contig15830.3.1|Name=mRNA_P-wetherbeei_contig15830.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
KPDDGGTPPTFAGGATHGKKGKGKGKGRAPSDSSANRFAVLDGGGEEEED
NGAGAAAAAAAAAPRVPDDKRLCEEDSRILRQLRVSVAYDGIVALGVPIG
TEAYVRRQLNQRLCGGDAGKLLERLVLLDDVQGAFALLRLSGAPRPIYNA
RTVPPSAAAPEFELFDALTAWVLATLIWRNDPLHSDIEVPSFADFVSNPD
VSRLPFTPTQLAQARLPARLCGLGVMSASAISPAAFVASMAGAIPKILAR
LPPLQAEALRDAL
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mRNA from alignment at P-wetherbeei_contig15830:254..1054+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15830.3.1 ID=mRNA_P-wetherbeei_contig15830.3.1|Name=mRNA_P-wetherbeei_contig15830.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig15830:254..1054+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCCGGACGACGGCGGCACCCCGCCCACCTTTGCTGGCGGCGCAACCCA
CGGCAAGAAAGGTAAGGGCAAGGGCAAGGGCCGTGCCCACCGGCAACCTC
CGTCCGACTCCTCGGCCAACCGTTTCGCTGTGCTTGACGGGGGTGGCGAA
GAGGAGGAAGACAACGGAGCCGGCGCCGCCGCCGCCGCCGCTGCTGCCGC
GCCACGGGTGCCAGATGATAAGCGACTCTGCGAAGAGGACAGCCGCATCC
TCCGGCAGCTCCGCGTCTCAGTGGCATACGACGGCATCGTCGCCCTGGGC
GTCCCGATCGGCACAGAGGCTTATGTTCGCCGCCAGCTCAACCAGCGCCT
CTGTGGTGGCGATGCTGGCAAGCTGCTGGAACGACTCGTGCTGCTCGACG
ACGTCCAAGGTGCGTTCGCATTGCTGCGCCTTTCCGGCGCCCCGCGCCCA
ATTTACAACGCCCGCACCGTCCCGCCGTCGGCAGCCGCGCCCGAGTTCGA
GCTTTTTGATGCTTTGACGGCGTGGGTACTTGCGACTTTGATATGGCGCA
ACGACCCGCTCCACAGCGACATTGAAGTCCCATCCTTCGCCGATTTTGTG
TCCAATCCTGACGTGTCCCGTCTCCCGTTTACGCCCACACAACTGGCGCA
AGCCCGCCTTCCAGCCCGTCTCTGTGGTCTAGGTGTCATGTCTGCTTCGG
CCATCAGCCCAGCCGCGTTCGTCGCTTCCATGGCCGGTGCCATTCCGAAG
ATTTTAGCCCGCCTTCCACCCCTGCAAGCGGAGGCCCTGCGCGATGCGCT
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15830:254..1054+

>mRNA_P-wetherbeei_contig15830.3.1 ID=mRNA_P-wetherbeei_contig15830.3.1|Name=mRNA_P-wetherbeei_contig15830.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig15830:254..1054+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCCGGACGACGGCGGCACCCCGCCCACCTTTGCTGGCGGCGCAACCCA
CGGCAAGAAAGGTAAGGGCAAGGGCAAGGGCCGTGCTCCGTCCGACTCCT
CGGCCAACCGTTTCGCTGTGCTTGACGGGGGTGGCGAAGAGGAGGAAGAC
AACGGAGCCGGCGCCGCCGCCGCCGCCGCTGCTGCCGCGCCACGGGTGCC
AGATGATAAGCGACTCTGCGAAGAGGACAGCCGCATCCTCCGGCAGCTCC
GCGTCTCAGTGGCATACGACGGCATCGTCGCCCTGGGCGTCCCGATCGGC
ACAGAGGCTTATGTTCGCCGCCAGCTCAACCAGCGCCTCTGTGGTGGCGA
TGCTGGCAAGCTGCTGGAACGACTCGTGCTGCTCGACGACGTCCAAGGTG
CGTTCGCATTGCTGCGCCTTTCCGGCGCCCCGCGCCCAATTTACAACGCC
CGCACCGTCCCGCCGTCGGCAGCCGCGCCCGAGTTCGAGCTTTTTGATGC
TTTGACGGCGTGGGTACTTGCGACTTTGATATGGCGCAACGACCCGCTCC
ACAGCGACATTGAAGTCCCATCCTTCGCCGATTTTGTGTCCAATCCTGAC
GTGTCCCGTCTCCCGTTTACGCCCACACAACTGGCGCAAGCCCGCCTTCC
AGCCCGTCTCTGTGGTCTAGGTGTCATGTCTGCTTCGGCCATCAGCCCAG
CCGCGTTCGTCGCTTCCATGGCCGGTGCCATTCCGAAGATTTTAGCCCGC
CTTCCACCCCTGCAAGCGGAGGCCCTGCGCGATGCGCTC
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