mRNA_P-wetherbeei_contig15821.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15821.1.1
Unique NamemRNA_P-wetherbeei_contig15821.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15821contigP-wetherbeei_contig15821:228..1511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size973
Hectar predicted targeting categoryother localisation
Exons3
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.5002775-UTR-P-wetherbeei_contig15821:227..2921683186068.5002775-UTR-P-wetherbeei_contig15821:227..292Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15821 228..292 +
1683186068.534725-UTR-P-wetherbeei_contig15821:1071..11461683186068.534725-UTR-P-wetherbeei_contig15821:1071..1146Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15821 1072..1146 +
1683186068.54384-UTR-P-wetherbeei_contig15821:1296..15111683186068.54384-UTR-P-wetherbeei_contig15821:1296..1511Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15821 1297..1511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.5152693-CDS-P-wetherbeei_contig15821:292..7281683186068.5152693-CDS-P-wetherbeei_contig15821:292..728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15821 293..728 +
1683186068.5249417-CDS-P-wetherbeei_contig15821:889..10711683186068.5249417-CDS-P-wetherbeei_contig15821:889..1071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15821 890..1071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15821.1.1prot_P-wetherbeei_contig15821.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15821 293..1071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15821.1.1

>prot_P-wetherbeei_contig15821.1.1 ID=prot_P-wetherbeei_contig15821.1.1|Name=mRNA_P-wetherbeei_contig15821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MTLEIQTGGRRRCRCKHFLQEFDKLRNTRAQTHVLNCKDNPYKLKLAKDI
AHGVSAPMLGTVATVGRSAGKRAAATAMATLDKSQPLMTSASHLQRRCPR
GYLKTSTTASYVRLIATAGVAFVIADNPWFLQMFDPLSGGRWYPAGTVLC
MFKEGVQDCVRTTSTRNTCASLHARIPPSRCASDSPSCLTVGQTLRESRL
LRCLL*
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mRNA from alignment at P-wetherbeei_contig15821:228..1511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15821.1.1 ID=mRNA_P-wetherbeei_contig15821.1.1|Name=mRNA_P-wetherbeei_contig15821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig15821:228..1511+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCAATTGGTTCGCTTCGCCGCCGGAGGGCCGGAAGGACTGCTGATCCG
GTGTGGAATGCGTACATGACCCTCGAGATCCAGACGGGAGGCCGCCGCCG
CTGCCGCTGCAAGCATTTTCTGCAGGAGTTTGATAAGCTGCGCAACACAA
GAGCTCAAACGCACGTCCTGAACTGCAAAGACAATCCATACAAGTTGAAG
CTCGCCAAGGACATCGCGCACGGAGTTTCAGCGCCCATGCTCGGTACCGT
CGCAACGGTGGGGCGCTCCGCGGGGAAGCGGGCTGCTGCGACGGCTATGG
CTACCCTCGACAAGTCGCAGCCACTGATGACATCCGCTTCACACCTGCAA
CGCCGGTGTCCCAGAGGTTATCTGAAGACCTCAACCACCGCCTCTTACGT
ACGACTCATTGCCACTGCGGGTGTCGCCTTCGTCATCGCCGACAACCCCT
GGTTCCTGCAGATGTTCGATCCGCTCAGTGGCGGGCGGTGGTACCCTGCA
GGTGAGTGATGCGCGCTTGCTATCTATTTCTTGTATCAATACAGACTTCT
TAAACGTTACTTTAAGGACCATGTCAATGCCGCGCTCCTGCCTCCGCCCA
TCCGGGAGTCCTTCAACGTCCAAGTTTTCGTACTCAATACTGTATTCTAT
AATTCCGCACAGGCACGGTGCTCTGTATGTTTAAGGAGGGAGTTCAGGAC
TGCGTCAGAACTACCTCAACAAGGAATACATGCGCGTCCTTGCATGCACG
TATACCGCCATCGCGGTGTGCCAGTGACTCACCATCATGCTTGACGGTTG
GACAGACGCTCAGGGAAAGTCGGTTGTTGCGGTGCTTGCTGTAACGGCGG
AGCGCAAAACCTACCTGCTGGAGCTGCTAGATTGCTTGGTTGACAGCCAC
ACGGCAGCTTTCAACACGGGTGCGTGGTAAGGTATTTCACTTCTTCCTTC
GTGCATCTCAAAAGTTGCCAGCCCTTCCGTGCCACAGTTTTTCGGATTGC
CCAGCCCAAATCAATGCACCCTCTCTGTGGCGTCTACTCTGCCGGCTTCA
CCGTTTTCGTTTTCAGCAGATCTCTTCTCCAAGATGATCGACAAGGTCGG
CGTCAAAAGGTGCTGCCATTTGCACCGACGGCGCCTCGGCGAAGACCCCC
AAGAATCGCCACATTCTTGACCTCCGCCGCCAAATGCACGCTTTCGCTCA
ATCTTGTGTATGGCTCTTTCGTCGGGCAGAAGGTCGCCAAGCTTATCACT
GAGACAGGTCATGTTCGTACGCGCCTCGCAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15821:228..1511+

>mRNA_P-wetherbeei_contig15821.1.1 ID=mRNA_P-wetherbeei_contig15821.1.1|Name=mRNA_P-wetherbeei_contig15821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig15821:228..1511+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCTCGAGATCCAGACGGGAGGCCGCCGCCGCTGCCGCTGCAAGCA
TTTTCTGCAGGAGTTTGATAAGCTGCGCAACACAAGAGCTCAAACGCACG
TCCTGAACTGCAAAGACAATCCATACAAGTTGAAGCTCGCCAAGGACATC
GCGCACGGAGTTTCAGCGCCCATGCTCGGTACCGTCGCAACGGTGGGGCG
CTCCGCGGGGAAGCGGGCTGCTGCGACGGCTATGGCTACCCTCGACAAGT
CGCAGCCACTGATGACATCCGCTTCACACCTGCAACGCCGGTGTCCCAGA
GGTTATCTGAAGACCTCAACCACCGCCTCTTACGTACGACTCATTGCCAC
TGCGGGTGTCGCCTTCGTCATCGCCGACAACCCCTGGTTCCTGCAGATGT
TCGATCCGCTCAGTGGCGGGCGGTGGTACCCTGCAGGCACGGTGCTCTGT
ATGTTTAAGGAGGGAGTTCAGGACTGCGTCAGAACTACCTCAACAAGGAA
TACATGCGCGTCCTTGCATGCACGTATACCGCCATCGCGGTGTGCCAGTG
ACTCACCATCATGCTTGACGGTTGGACAGACGCTCAGGGAAAGTCGGTTG
TTGCGGTGCTTGCTGTAA
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