mRNA_P-wetherbeei_contig15818.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15818.1.1
Unique NamemRNA_P-wetherbeei_contig15818.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A7Y3GZ27_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GZ27_9DELT)

HSP 1 Score: 120 bits (300), Expect = 5.730e-34
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 MSNFSFARPQETHPVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            MSNF F RP E  PVQ+REPV+G C  CG E L RYPVLSEGGWFM VKCQ CLHSQSRE+W RLG+V L TD++
Sbjct:    1 MSNFVFNRPAELFPVQEREPVAGACAECGEEHLQRYPVLSEGGWFMVVKCQTCLHSQSRERWHRLGHVQLATDAL 75          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A523PBV0_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PBV0_9PROT)

HSP 1 Score: 112 bits (281), Expect = 3.820e-31
Identity = 52/76 (68.42%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 MSNFSFARPQETHPVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSID 228
            MSNF F RP E  PVQ RE V+G C  CGAE L RYPVLSEGGWFM VKCQ+CL S SRE W RLG V LL+D +D
Sbjct:    1 MSNFVFTRPTEKAPVQARESVAGACPDCGAEGLRRYPVLSEGGWFMAVKCQECLCSVSREPWRRLGPVQLLSDELD 76          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: UPI001C4A56C7 (hypothetical protein n=1 Tax=Pseudonocardia abyssalis TaxID=2792008 RepID=UPI001C4A56C7)

HSP 1 Score: 97.1 bits (240), Expect = 6.290e-25
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   13 SFARPQETHPVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            +F RPQE      +EPV GTC +CGA+ L RYPV SEGGWF  VKCQ CLHS SRE+W+ LG + LL+D++
Sbjct:    3 AFPRPQEPTVTLVKEPVDGTCPTCGADQLRRYPVNSEGGWFQVVKCQNCLHSLSRERWNLLGSLQLLSDTL 73          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A1H4WYS0_9NOCA (Uncharacterized protein n=4 Tax=Rhodococcus TaxID=1827 RepID=A0A1H4WYS0_9NOCA)

HSP 1 Score: 89.4 bits (220), Expect = 6.850e-22
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   40 PVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            PV +R PV G C  CGAE L RYPV+SEGGWF  VKCQQCL S  R  WSRLG + LLTD +
Sbjct:   11 PVLERTPVDGHCPRCGAEELRRYPVVSEGGWFQVVKCQQCLLSLDRSPWSRLGPIQLLTDLL 72          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A4R1I2N8_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardia endophytica TaxID=401976 RepID=A0A4R1I2N8_9PSEU)

HSP 1 Score: 88.6 bits (218), Expect = 1.420e-21
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   16 FARPQETHPVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            F RP+E      +EPV G+C +C A  L RYPV SEGGWF  VKCQ CLHS SRE+W+  G + LL D+I
Sbjct:    4 FPRPEEPTVSLVKEPVDGSCPACSAAELRRYPVNSEGGWFQVVKCQNCLHSVSRERWNLFGSLQLLADTI 73          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A417Y6X6_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides immobilis TaxID=2049295 RepID=A0A417Y6X6_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 1.500e-21
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   34 THPVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            T PV +R PV GTCD CG  +L  YPVLSEGGWF  VKCQ CLHS  R +WS LG V+L ++ I
Sbjct:    9 TGPVVERTPVEGTCDRCGEASLTAYPVLSEGGWFKVVKCQTCLHSVERTRWSLLGPVSLTSEGI 72          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A6I3EU63_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3EU63_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 5.780e-21
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   43 VQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            V  RE V G+C  CG   L RYPVLS+GGWFM  KCQ CLHS  R  W+RLGY+ L  DSI
Sbjct:   12 VVNREAVEGSCPECGGAQLQRYPVLSDGGWFMATKCQDCLHSLERTPWNRLGYIVLPEDSI 72          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A535M2I4_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535M2I4_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 1.660e-20
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   13 SFARPQETHPVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            ++ R  +      +E V G C SCG++ L RYPVLSEGGW+M  KCQ CL S  RE+WSRLG + LLTD +
Sbjct:    3 TYPRSDQPRLFVTKEDVQGVCPSCGSQNLKRYPVLSEGGWWMITKCQNCLFSVQRERWSRLGSIALLTDLL 73          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: A0A1G7XCT4_9MICO (Uncharacterized protein n=1 Tax=Microbacterium pygmaeum TaxID=370764 RepID=A0A1G7XCT4_9MICO)

HSP 1 Score: 85.9 bits (211), Expect = 1.790e-20
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   49 KREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSID 228
            +R  V G C  CG   L RYPV SEGGWFM VKCQ+CLHS SRE W+RLG + LL D+I+
Sbjct:   13 ERTRVEGVCPQCGTGELARYPVNSEGGWFMVVKCQECLHSVSREPWNRLGPIALLVDTIE 72          
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Match: UPI0003AAB142 (hypothetical protein n=1 Tax=Amycolatopsis orientalis TaxID=31958 RepID=UPI0003AAB142)

HSP 1 Score: 84.7 bits (208), Expect = 4.740e-20
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   49 KREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKCQQCLHSQSREKWSRLGYVTLLTDSI 225
            +R+PV G+C  C +E L  YPV +EGGW++TVKCQQCLHS  RE WSRLG V LL+D++
Sbjct:   15 ERKPVEGSCPHCRSEDLAHYPVNTEGGWYLTVKCQQCLHSIHREPWSRLGPVHLLSDTL 73          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15818.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y3GZ27_9DELT5.730e-3470.67Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A523PBV0_9PROT3.820e-3168.42Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
UPI001C4A56C76.290e-2559.15hypothetical protein n=1 Tax=Pseudonocardia abyssa... [more]
A0A1H4WYS0_9NOCA6.850e-2264.52Uncharacterized protein n=4 Tax=Rhodococcus TaxID=... [more]
A0A4R1I2N8_9PSEU1.420e-2155.71Uncharacterized protein n=1 Tax=Pseudonocardia end... [more]
A0A417Y6X6_9ACTN1.500e-2160.94Uncharacterized protein n=1 Tax=Nocardioides immob... [more]
A0A6I3EU63_9ACTN5.780e-2160.66Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A535M2I4_9CHLR1.660e-2052.11Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A1G7XCT4_9MICO1.790e-2061.67Uncharacterized protein n=1 Tax=Microbacterium pyg... [more]
UPI0003AAB1424.740e-2061.02hypothetical protein n=1 Tax=Amycolatopsis orienta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15818contigP-wetherbeei_contig15818:680..910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1415166.NONO_c26880
Model size231
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.25e-20
EggNOG OGs29QDQ@1|root,30BD0@2|Bacteria,2GVJB@201174|Actinobacteria
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.3831527-CDS-P-wetherbeei_contig15818:679..9101683186068.3831527-CDS-P-wetherbeei_contig15818:679..910Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15818 680..910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15818.1.1prot_P-wetherbeei_contig15818.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15818 680..910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15818.1.1

>prot_P-wetherbeei_contig15818.1.1 ID=prot_P-wetherbeei_contig15818.1.1|Name=mRNA_P-wetherbeei_contig15818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
MSNFSFARPQETHPVQKREPVSGTCDSCGAEALMRYPVLSEGGWFMTVKC
QQCLHSQSREKWSRLGYVTLLTDSID*
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mRNA from alignment at P-wetherbeei_contig15818:680..910-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15818.1.1 ID=mRNA_P-wetherbeei_contig15818.1.1|Name=mRNA_P-wetherbeei_contig15818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig15818:680..910- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTAATTTCTCCTTTGCGCGGCCGCAGGAAACCCACCCGGTCCAAAA GCGCGAGCCGGTCTCCGGCACCTGCGACAGTTGCGGCGCCGAAGCGCTCA TGCGCTATCCGGTATTGTCGGAAGGCGGCTGGTTCATGACGGTAAAATGT CAGCAATGCCTGCATTCCCAGAGTCGCGAAAAATGGTCGCGCCTCGGTTA CGTCACCCTGCTCACCGACTCGATCGATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15818:680..910-

>mRNA_P-wetherbeei_contig15818.1.1 ID=mRNA_P-wetherbeei_contig15818.1.1|Name=mRNA_P-wetherbeei_contig15818.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig15818:680..910- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTAATTTCTCCTTTGCGCGGCCGCAGGAAACCCACCCGGTCCAAAA
GCGCGAGCCGGTCTCCGGCACCTGCGACAGTTGCGGCGCCGAAGCGCTCA
TGCGCTATCCGGTATTGTCGGAAGGCGGCTGGTTCATGACGGTAAAATGT
CAGCAATGCCTGCATTCCCAGAGTCGCGAAAAATGGTCGCGCCTCGGTTA
CGTCACCCTGCTCACCGACTCGATCGATTAA
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