mRNA_P-wetherbeei_contig1581.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1581.3.1
Unique NamemRNA_P-wetherbeei_contig1581.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1581.3.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.050e-7
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 2 
Query: 1211 SSAEALERCFRGRYGLPGPPTSAFKVGFEAGQLGLELEENP-TRGYVTVKRVTPGAQAECDGRIFAGCLVVA 1423
            +  E     F+   G P P  +AF+V FE G LG+ELEE P  RG V V+RV    QAE DGR+ AGCL+VA
Sbjct:  281 TETEITHMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVA 352
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BLAST of mRNA_P-wetherbeei_contig1581.3.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.420e-7
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2 
Query: 1238 FRGRYGLPGPPTSAFKVGFEAGQLGLELEENP-TRGYVTVKRVTPGAQAECDGRIFAGCLVVA 1423
            F+   G P P  +AF+V FE G LG+ELEE P  RG V V+RV    QAE DGR+ AGCL+VA
Sbjct:  278 FQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVA 340
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1581.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7E5_ECTSI1.050e-750.00VHL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVY5_9PHAE2.420e-755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1581contigP-wetherbeei_contig1581:1881..5884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog497964.CfE428DRAFT_4871
PFAMsPD40,PI-PLC-X
Model size3804
Max annot lvl2|Bacteria
KEGG rclassRC00017,RC00425
KEGG koko:K01771
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.0001
EggNOG OGsCOG0823@1|root,COG0823@2|Bacteria
Ec32 ortholog descriptionvon Hippel-Lindau disease tumour suppressor, beta/alpha domain
Ec32 orthologEc-21_005310.1
EC4.6.1.13
DescriptionInvolved in the tonB-independent uptake of proteins
Cds size2712
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.2292533-UTR-P-wetherbeei_contig1581:1880..19411683186068.2292533-UTR-P-wetherbeei_contig1581:1880..1941Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1581 1881..1941 +
1683186068.2395022-UTR-P-wetherbeei_contig1581:2141..29871683186068.2395022-UTR-P-wetherbeei_contig1581:2141..2987Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1581 2142..2987 +
1683186068.2551365-UTR-P-wetherbeei_contig1581:5699..58841683186068.2551365-UTR-P-wetherbeei_contig1581:5699..5884Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1581 5700..5884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.247529-CDS-P-wetherbeei_contig1581:2987..56991683186068.247529-CDS-P-wetherbeei_contig1581:2987..5699Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1581 2988..5699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1581.3.1prot_P-wetherbeei_contig1581.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1581 2988..5699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1581.3.1

>prot_P-wetherbeei_contig1581.3.1 ID=prot_P-wetherbeei_contig1581.3.1|Name=mRNA_P-wetherbeei_contig1581.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=904bp
MEAGLTVLLAGEEDLAETGGRLWYDAEARQLALAAAAAAEAAAAEAAAAH
AAAEAAAIAAGCRPAFPSGGSGGDDDNADSAGTANDQEEDDAYDVDGVGG
PSSAEALERCFRGRYGLPGPPTSAFKVGFEAGQLGLELEENPTRGYVTVK
RVTPGAQAECDGRIFAGCLVVAAAVAVEAAAGTGADAAGDATATTPTSAA
GVREDDNASAIDADGTGTAVGATGNGDAAVAVAAMTGPIDNAGTPAATND
DSGSAPSGSSAPAAPTTATLAESNFTMEVIRSLGDFEYMLRRMAAAGANQ
LDVYFLDRYAPKAIAALGPPAATAAAEDLSGSAPVLPCGSATAAPVLQRL
SRRTSRSDGKSAASSVASRGSVCAIAGRNSGSGCGSSSILTRNGAGGAGG
SSILSRGSAGGNGALDKGGGGNGILSRGSFEEGGSVDVGRPVASRNAGSP
APSAVRYSADGGWWRDGRGAREDNRRRDVVRSFPGRHWGDGDGESGQPNI
TAEPADGTGGADAATAAIRPERQGTGSRGGGGSGDGGDCGGGMSPLAEAF
AAARKLSMEETRSAFGGWGAVADGLGPHSATRRSSYEDPSEAGWHFETGG
GIAGEALAEYGNGGGGDGGSGNDGNDDDDSDGSEARTTASGGESGSSEQD
AEGKYFGGEDEEEEDAALAGRRPAQQVQLESVANEDALLRPASLPLGLGA
SAGTGAAVFVWICNGHTALALQVAWIDRGGELALRQTLQPGESYFERTFV
GHPWAFRTGLAATLAGDGFCNDGDHVEGGGGGSGSGAGECMVVRIGAAAF
AAGATNCIMWNPGRGSVSIAQQARVSTDWDGGRGLDGGGGSGRGTRVGRS
PAAVRARVHWAKAEALRELAAWRRFPPEADPDPGARHRLSRGVPHLRLVL
LGN*
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mRNA from alignment at P-wetherbeei_contig1581:1881..5884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1581.3.1 ID=mRNA_P-wetherbeei_contig1581.3.1|Name=mRNA_P-wetherbeei_contig1581.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4004bp|location=Sequence derived from alignment at P-wetherbeei_contig1581:1881..5884+ (Phaeothamnion wetherbeei SAG_119_79)
CCACTTCGACGTTGAGAACGAGAGTTTCCGCAAAAACGCTCTGCCGCACT
TCCAGTGGCAGGTAGTGAATTAACACTATTTCTCCTGTTCTCCCAGTTGC
ACTTCATCTTGCACTTGGAAATGAATGTCCTTCAGCTCACGAATCGCTTT
TCTGCATCCTTCAAAATAGGCAACTCACCTTCCTGCGCTTTCCCTCGCGC
CTTCTTTAAAGAATCGTTGCCACCCTCTCCGTTTGCTTTATTCTTGCGCG
TTCCCTGCCAGATCGGCGTCGCTGCGGCGGCTCCGTGCACGCCGCCCGCG
CTCCGGCACTTTTTGCCGCCGCTTGAGCGCCACGGCGACTTCGGCCCAAT
CCTCCGCACCAGCCTCTCTGACGGAGTTCTCCCTCCGTCCGCCGCAGCGG
TTCGCGCTCCCGCTGCCGGAACCCCGTGGCCCCGACCTGCCAAGCAAGAG
CCCTACCACCCCTTGAAGGACCCGTCGCCCCTGGGTGCAGAGGAGCGGGG
AGTTGCTTCCCCGACACGCGTCCGCAGCAATGATGTGCCTCACCGACGCC
TCGCCGGTAGCGGCGATGCCGCCCGCGGGCGTTTCGCGGAAGCGGCGACG
GTGCTGGCTACGTTTATTAATGCTCACAGTGACGAATCCAGCGCGGCCGT
GGCGCCCGTCACCGGCGGGAGCGGCGATGTCGATGTTTTTCTTGCACGTT
CTGCGTCCGGCACCGGCGGCAACAGCGGGTCCAGCGGCGGCGGGGTCGCT
TTGGAGCATTTGAGCCTAGGCGCTGCAGAATCGGCCTTTCGAATCCTGCA
GGGTCGCCTGTCGCTGCAGCAATCGCAGGCGATTGCGGCAAAAGCTAGCG
AATCAGATGATAACAATGGCGCTGATGGCGACGGCAACGGCAACGGCGCG
GGCGGCGGCGGCGGCGACGGCAACAATTATGGCGAGAGCTGCCGCGCTGG
CAGCGGCCACAGCTGCCGCGCTGGCAGCGGCCACGGCAGCCGCGGTGGTG
GAAGCCGTGGAAGCGGTAGCGGCAACGGCGCCAAAACGGAAGGCGGCAGG
AGCAGCAGCAGCGGCGGCACAGACGGCAGTGGCAGCGAAGCGGCACTTTT
GGCGGCAATGGAGGCCGGGCTGACGGTTCTGCTGGCCGGGGAAGAAGACC
TGGCTGAAACCGGCGGGCGCCTTTGGTACGATGCCGAAGCACGCCAGCTC
GCCCTTGCCGCCGCCGCCGCCGCCGAAGCCGCCGCCGCCGAGGCCGCCGC
GGCACATGCCGCAGCGGAAGCCGCCGCAATCGCTGCCGGCTGTCGTCCAG
CGTTTCCCTCCGGCGGCAGCGGTGGCGATGATGACAATGCTGACAGCGCC
GGCACCGCAAACGACCAAGAAGAGGACGACGCCTACGACGTAGACGGCGT
CGGCGGTCCGTCGTCGGCGGAGGCACTGGAGCGGTGCTTCCGCGGCCGGT
ACGGGCTACCGGGACCGCCGACATCGGCATTCAAGGTGGGATTTGAGGCC
GGCCAGCTCGGGCTTGAGCTGGAAGAGAACCCGACCAGGGGTTACGTGAC
GGTGAAACGGGTGACGCCGGGTGCCCAGGCGGAATGCGACGGCCGCATCT
TCGCCGGCTGCCTCGTCGTCGCCGCCGCTGTCGCTGTCGAGGCTGCAGCA
GGCACTGGCGCTGATGCCGCCGGCGACGCTACCGCCACCACACCCACTTC
TGCTGCTGGCGTGCGAGAGGACGACAACGCCTCCGCGATTGATGCGGATG
GAACTGGAACTGCCGTTGGTGCCACCGGAAATGGTGACGCAGCCGTCGCA
GTAGCAGCCATGACGGGGCCCATCGATAACGCAGGTACACCAGCGGCCAC
AAACGACGATAGCGGCAGCGCTCCTAGCGGTAGCAGCGCACCCGCCGCAC
CTACGACGGCCACGCTTGCCGAAAGCAACTTTACAATGGAAGTCATTCGG
AGCCTCGGAGACTTCGAGTACATGCTCCGACGGATGGCCGCGGCCGGCGC
CAACCAGCTCGACGTTTATTTTCTCGACCGGTACGCGCCAAAGGCGATAG
CGGCGCTGGGCCCGCCGGCGGCGACGGCTGCAGCCGAAGATTTAAGCGGT
TCTGCTCCCGTGTTGCCATGCGGTTCGGCGACGGCAGCACCCGTTTTGCA
GCGGCTTTCGCGCCGGACCAGTCGCAGCGACGGCAAAAGCGCCGCCAGCA
GCGTCGCGAGCAGAGGCAGCGTTTGCGCCATAGCAGGCCGGAATAGCGGC
AGCGGTTGCGGCAGCAGCAGCATTCTTACCAGGAACGGCGCCGGCGGCGC
CGGCGGGAGCAGCATACTGAGCAGGGGAAGTGCTGGAGGCAACGGTGCCC
TGGACAAGGGCGGCGGTGGCAACGGCATTCTGAGCCGGGGCAGCTTTGAA
GAGGGCGGCAGCGTCGACGTCGGCAGGCCCGTCGCGTCGCGGAACGCCGG
CAGCCCGGCGCCGTCGGCTGTCCGCTATAGTGCCGACGGCGGCTGGTGGC
GGGACGGCAGGGGGGCACGCGAAGACAACCGGCGGCGGGACGTGGTGCGC
TCTTTTCCCGGCCGCCACTGGGGCGATGGCGACGGAGAATCGGGTCAGCC
GAACATAACCGCAGAACCTGCAGATGGTACCGGAGGTGCCGATGCAGCCA
CTGCCGCGATCAGACCTGAGCGGCAAGGCACAGGAAGCCGCGGCGGTGGC
GGCAGCGGCGACGGCGGCGACTGCGGCGGGGGTATGAGTCCACTGGCGGA
AGCGTTTGCGGCCGCCAGAAAATTGTCGATGGAGGAAACCCGTTCGGCCT
TCGGTGGTTGGGGCGCCGTCGCTGACGGCCTGGGGCCGCATTCCGCCACG
CGCCGCAGCAGCTACGAGGATCCGTCGGAGGCTGGATGGCATTTCGAGAC
CGGAGGCGGCATTGCCGGCGAGGCGCTGGCAGAGTATGGCAACGGGGGCG
GCGGCGACGGCGGCAGCGGCAACGACGGCAATGACGACGATGACAGCGAT
GGCAGCGAGGCAAGGACAACAGCTTCCGGCGGAGAGAGCGGCTCATCGGA
GCAAGACGCAGAAGGAAAATACTTTGGAGGCGAAGATGAAGAGGAAGAAG
ACGCGGCGCTCGCGGGGCGCCGGCCAGCGCAGCAAGTGCAGCTGGAGTCG
GTGGCGAACGAAGACGCGCTGCTGCGACCGGCTAGTCTGCCGCTGGGACT
GGGCGCCTCGGCGGGCACCGGCGCTGCGGTCTTCGTCTGGATCTGCAACG
GACACACGGCGCTGGCGCTGCAGGTGGCGTGGATCGACCGCGGCGGGGAG
CTGGCGCTGCGGCAGACGCTGCAGCCGGGTGAGAGCTACTTCGAGCGGAC
TTTCGTCGGCCACCCATGGGCCTTCCGGACCGGACTCGCCGCCACACTCG
CCGGCGACGGATTCTGCAATGACGGCGACCACGTCGAAGGCGGCGGCGGC
GGAAGCGGCAGTGGGGCCGGCGAGTGCATGGTAGTGCGTATCGGCGCGGC
GGCCTTCGCGGCGGGAGCGACGAACTGCATCATGTGGAACCCCGGCCGCG
GTTCCGTCTCCATCGCCCAGCAGGCGCGCGTCTCCACGGACTGGGACGGC
GGCCGCGGCCTTGATGGAGGCGGTGGCAGCGGACGGGGCACCCGCGTCGG
CCGCAGCCCGGCGGCAGTTCGCGCCCGGGTGCATTGGGCCAAGGCGGAGG
CGCTGCGGGAGTTGGCGGCGTGGCGGCGCTTCCCGCCGGAGGCGGATCCC
GACCCCGGGGCGCGGCATCGTCTCAGCCGGGGCGTGCCGCACCTCCGGCT
TGTGCTGCTCGGGAACTAGCCGGTTTCAGGAAAATCGTTTTTCCACTTTC
CTTTGGCGTCGTTTTCAAGGTATTTGTGTATCTGGAGCTTTTTTGGACAG
TGAAGTGAGGAAGAAGGATATGCCTGCAGGAGAGCGACCGGCCGCCCAAC
TCGCACCCAGGAAAAGGACCGGACTTTCAACCAAAACCAATAAGAAACGT
CCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1581:1881..5884+

>mRNA_P-wetherbeei_contig1581.3.1 ID=mRNA_P-wetherbeei_contig1581.3.1|Name=mRNA_P-wetherbeei_contig1581.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2712bp|location=Sequence derived from alignment at P-wetherbeei_contig1581:1881..5884+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCCGGGCTGACGGTTCTGCTGGCCGGGGAAGAAGACCTGGCTGA
AACCGGCGGGCGCCTTTGGTACGATGCCGAAGCACGCCAGCTCGCCCTTG
CCGCCGCCGCCGCCGCCGAAGCCGCCGCCGCCGAGGCCGCCGCGGCACAT
GCCGCAGCGGAAGCCGCCGCAATCGCTGCCGGCTGTCGTCCAGCGTTTCC
CTCCGGCGGCAGCGGTGGCGATGATGACAATGCTGACAGCGCCGGCACCG
CAAACGACCAAGAAGAGGACGACGCCTACGACGTAGACGGCGTCGGCGGT
CCGTCGTCGGCGGAGGCACTGGAGCGGTGCTTCCGCGGCCGGTACGGGCT
ACCGGGACCGCCGACATCGGCATTCAAGGTGGGATTTGAGGCCGGCCAGC
TCGGGCTTGAGCTGGAAGAGAACCCGACCAGGGGTTACGTGACGGTGAAA
CGGGTGACGCCGGGTGCCCAGGCGGAATGCGACGGCCGCATCTTCGCCGG
CTGCCTCGTCGTCGCCGCCGCTGTCGCTGTCGAGGCTGCAGCAGGCACTG
GCGCTGATGCCGCCGGCGACGCTACCGCCACCACACCCACTTCTGCTGCT
GGCGTGCGAGAGGACGACAACGCCTCCGCGATTGATGCGGATGGAACTGG
AACTGCCGTTGGTGCCACCGGAAATGGTGACGCAGCCGTCGCAGTAGCAG
CCATGACGGGGCCCATCGATAACGCAGGTACACCAGCGGCCACAAACGAC
GATAGCGGCAGCGCTCCTAGCGGTAGCAGCGCACCCGCCGCACCTACGAC
GGCCACGCTTGCCGAAAGCAACTTTACAATGGAAGTCATTCGGAGCCTCG
GAGACTTCGAGTACATGCTCCGACGGATGGCCGCGGCCGGCGCCAACCAG
CTCGACGTTTATTTTCTCGACCGGTACGCGCCAAAGGCGATAGCGGCGCT
GGGCCCGCCGGCGGCGACGGCTGCAGCCGAAGATTTAAGCGGTTCTGCTC
CCGTGTTGCCATGCGGTTCGGCGACGGCAGCACCCGTTTTGCAGCGGCTT
TCGCGCCGGACCAGTCGCAGCGACGGCAAAAGCGCCGCCAGCAGCGTCGC
GAGCAGAGGCAGCGTTTGCGCCATAGCAGGCCGGAATAGCGGCAGCGGTT
GCGGCAGCAGCAGCATTCTTACCAGGAACGGCGCCGGCGGCGCCGGCGGG
AGCAGCATACTGAGCAGGGGAAGTGCTGGAGGCAACGGTGCCCTGGACAA
GGGCGGCGGTGGCAACGGCATTCTGAGCCGGGGCAGCTTTGAAGAGGGCG
GCAGCGTCGACGTCGGCAGGCCCGTCGCGTCGCGGAACGCCGGCAGCCCG
GCGCCGTCGGCTGTCCGCTATAGTGCCGACGGCGGCTGGTGGCGGGACGG
CAGGGGGGCACGCGAAGACAACCGGCGGCGGGACGTGGTGCGCTCTTTTC
CCGGCCGCCACTGGGGCGATGGCGACGGAGAATCGGGTCAGCCGAACATA
ACCGCAGAACCTGCAGATGGTACCGGAGGTGCCGATGCAGCCACTGCCGC
GATCAGACCTGAGCGGCAAGGCACAGGAAGCCGCGGCGGTGGCGGCAGCG
GCGACGGCGGCGACTGCGGCGGGGGTATGAGTCCACTGGCGGAAGCGTTT
GCGGCCGCCAGAAAATTGTCGATGGAGGAAACCCGTTCGGCCTTCGGTGG
TTGGGGCGCCGTCGCTGACGGCCTGGGGCCGCATTCCGCCACGCGCCGCA
GCAGCTACGAGGATCCGTCGGAGGCTGGATGGCATTTCGAGACCGGAGGC
GGCATTGCCGGCGAGGCGCTGGCAGAGTATGGCAACGGGGGCGGCGGCGA
CGGCGGCAGCGGCAACGACGGCAATGACGACGATGACAGCGATGGCAGCG
AGGCAAGGACAACAGCTTCCGGCGGAGAGAGCGGCTCATCGGAGCAAGAC
GCAGAAGGAAAATACTTTGGAGGCGAAGATGAAGAGGAAGAAGACGCGGC
GCTCGCGGGGCGCCGGCCAGCGCAGCAAGTGCAGCTGGAGTCGGTGGCGA
ACGAAGACGCGCTGCTGCGACCGGCTAGTCTGCCGCTGGGACTGGGCGCC
TCGGCGGGCACCGGCGCTGCGGTCTTCGTCTGGATCTGCAACGGACACAC
GGCGCTGGCGCTGCAGGTGGCGTGGATCGACCGCGGCGGGGAGCTGGCGC
TGCGGCAGACGCTGCAGCCGGGTGAGAGCTACTTCGAGCGGACTTTCGTC
GGCCACCCATGGGCCTTCCGGACCGGACTCGCCGCCACACTCGCCGGCGA
CGGATTCTGCAATGACGGCGACCACGTCGAAGGCGGCGGCGGCGGAAGCG
GCAGTGGGGCCGGCGAGTGCATGGTAGTGCGTATCGGCGCGGCGGCCTTC
GCGGCGGGAGCGACGAACTGCATCATGTGGAACCCCGGCCGCGGTTCCGT
CTCCATCGCCCAGCAGGCGCGCGTCTCCACGGACTGGGACGGCGGCCGCG
GCCTTGATGGAGGCGGTGGCAGCGGACGGGGCACCCGCGTCGGCCGCAGC
CCGGCGGCAGTTCGCGCCCGGGTGCATTGGGCCAAGGCGGAGGCGCTGCG
GGAGTTGGCGGCGTGGCGGCGCTTCCCGCCGGAGGCGGATCCCGACCCCG
GGGCGCGGCATCGTCTCAGCCGGGGCGTGCCGCACCTCCGGCTTGTGCTG
CTCGGGAACTAG
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