mRNA_P-wetherbeei_contig158.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig158.4.1
Unique NamemRNA_P-wetherbeei_contig158.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.700e-21
Identity = 113/373 (30.29%), Postives = 144/373 (38.61%), Query Frame = 2
Query: 1301 RTSLWARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGI---LVDPGPPDPAAR-------------------LDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLP----------------------------GAAPPRERRAKPPTGARAAEAGAV---SSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLR-TGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYIAWV 2257
            RTSLW+R+V FY V++ D+L A ++AEIV KY  KE  L A+L+KKY   L     S ++      FG+ D D+  RG   D                 AAG           +P AR                   L+FRS  FD   AL    LRPP     ALDN +KF  +LP                             AA  R        G R+  AG +   ++  S  G+                                                          E F  NPV  I      +GPYSLL +  EE  R  VMIRRVNS+RGTC GL+ AFD+HMN++L+DV E Y A+V
Sbjct:    5 RTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLA-RGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERF--NPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFV 374          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.850e-21
Identity = 111/380 (29.21%), Postives = 140/380 (36.84%), Query Frame = 2
Query: 1301 RTSLWARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGIL---VDPGPPDPAAR-------------------LDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPT--------------------------------------GARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLR-TGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYIAWV 2257
            RTSLW+R+V FY V++ D+L   ++AEIV KY  KE  L A+L+KKYG  L     S ++      FG+ D D+  RG   D                  AG           + AAR                   L+FRS  FD   AL    LRPP     ALDN +KF  +LP          KPPT                                      G R   AG V   ++A                                                            +     NPV  I      +GPYSLL +  EE  R  VMIRRVNS+RGTC GL+ AFD+HMN++L+DV E Y A+V
Sbjct:    5 RTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLA-RGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLP----------KPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFV 373          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A2D4BUY2_PYTIN (Sm domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY2_PYTIN)

HSP 1 Score: 97.8 bits (242), Expect = 2.370e-18
Identity = 102/314 (32.48%), Postives = 124/314 (39.49%), Query Frame = 2
Query: 1316 ARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGL---LTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDPGPPDPAARLDFRSPHFDAALALRTPGLRPPVLN-VQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVT--TIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTE 2239
            AR+  FY  H P   +   +AEIV+KYRGKEA L AKL KKYG+      T A + E + A  R    D                             A    D  P      LDFRSP FDA  AL +  LRPPV + V  LDN  K   LLP   P  +     P  A A      +++ +A                                                             +  A  P    T+A     GP+S+L +   ER RVRV++RRVNSVRG C G L AFDKHMN+VLLDVTE
Sbjct:   10 ARLRAFYATHNPGNQQN--IAEIVSKYRGKEAVLCAKLRKKYGVAPDLPTTPAITKEASAAATRPPEYDA----------------------AYTPFCAPETRDDDP------LDFRSPAFDALQALSSWTLRPPVSDGVFPLDNIHKCRRLLPTTDPHYQSVVIGPAQATAKRQQRQATKPAA-------------------------------------------------------------DVTAPKPTLFETLADTYLDGPFSVLRRCFLERKRVRVVLRRVNSVRGVCVGFLKAFDKHMNLVLLDVTE 232          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.460e-17
Identity = 116/315 (36.83%), Postives = 138/315 (43.81%), Query Frame = 2
Query: 1367 PLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDP-----------GPPDPAA----------RLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLR-TGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERY 2245
            PLL +I  K+  ++  L AKL KKY   L      A V D C RFGL DP+  G       XXXXXXXXXXXXXXXX       P           G P   A          +L+FRS HF+A  AL+  G+  PV N Q LDN +KF  LLP   P  +R    P  A++  A     RS+A  A                                                        + +P A   V  +A G + TGP S L +   E  RV VMIR VNSVRG C GLL AFDKH NMV++DVTERY
Sbjct:    2 PLL-QIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPEEAGAADAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASLGVPSQQADQQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADHP--DRTVTRPPKAQSGTAQQRHMRSAAAEAQPTAHERQASTQQHMQ----------------------------------------QADPLAL--VMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERY 271          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 3.990e-17
Identity = 94/316 (29.75%), Postives = 122/316 (38.61%), Query Frame = 2
Query: 1316 ARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADA----CDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDPGPPDPAARLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRA----KPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTE 2239
            AR+  FY +  P   +   +AEIV KYRGKEAAL A+L KKYG      ++S    D            DP                              +  +  P      LDFRS  FDA  AL T  ++P V +V  LDN  K  HLLP + P  +R      KP     + +  A +S  +                                                               P A    + +A     GP+++L +   ER RV+V+IRRVNS+RGTC G L AFDKHMN+VLLDVTE
Sbjct:   10 ARLRAFYAMVNPGNEQN--IAEIVRKYRGKEAALCARLQKKYGKAPDLVSESTPTMDTKANPVKAVSAYDPHY-----------------------EVFKAVECEESP------LDFRSSAFDALKALTTASVKPLVSSVYPLDNIHKCRHLLPESDPNHQRLVTVTPKPVAPKPSTKTQAAASTDT--------------------------------------------------------------PPPADGFFSALADTYLDGPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTE 232          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: E1ZJN8_CHLVA (Sm domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJN8_CHLVA)

HSP 1 Score: 79.7 bits (195), Expect = 8.600e-13
Identity = 64/206 (31.07%), Postives = 84/206 (40.78%), Query Frame = 2
Query: 1628 PDPAARLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERY 2245
            PDPA  LDF SP FD   AL+  GLRPPV   +  DN  +   LLP   P     A+ P  ++ A+  A   +                                                            +   +    NPV  IA  ++ GP  LL +  ++R RVRV+ R    VRG+ EGLL+AFDKHMN+VL DV E+Y
Sbjct:    8 PDPA--LDFFSPRFDPLRALQAEGLRPPVPGARPQDNVFRCRFLLPPDHPDAWNEARRPGKSKEAQEAAQREK----------------------------------------------------LRISYVHQKQERQQVRTNPVDQIAERVQHGPLLLLKRWYQQRSRVRVVTRHARGVRGSSEGLLVAFDKHMNLVLRDVEEQY 159          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: V9F378_PHYPR (Sm domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F378_PHYPR)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-11
Identity = 68/206 (33.01%), Postives = 84/206 (40.78%), Query Frame = 2
Query: 1646 LDFRSPHFDAALALRTPG--LRPPVLNVQALDNTSKFVHLLPGAAPPRER---RAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYI 2248
            LDFRS  FDA  AL+TP   L+ PV     LDN  K  HLLP     R+    R K P+ + A    AV  ++ A                                                              P   +    +A     GP+ +L +   ER RV V+IRRVNSVRGTC G L AFDKHMN+VLLDVT+ +I
Sbjct:   92 LDFRSAQFDALKALQTPKDQLKLPVATAHPLDNIQKCRHLLPELDVNRQTLVVRPKKPSPSAADAKAAVVKKAPA--------------------------------------------------------------PATPSLFEQLADTYLEGPFRVLRRCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFI 235          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: D0MT91_PHYIT (Sm domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT91_PHYIT)

HSP 1 Score: 77.8 bits (190), Expect = 1.120e-11
Identity = 68/205 (33.17%), Postives = 85/205 (41.46%), Query Frame = 2
Query: 1646 LDFRSPHFDAALALRTPG--LRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNP--VTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYI 2248
            LDFRS  FDA  AL+TP   L+ PV+    LDNT K  HLLP +   R+        AR  +A   ++ + AV                                                          +  P    P     +A     GP+ +L     ER RV V+IRRVNSVRGTC G L AFDKHMN+VLLDVT+ +I
Sbjct:   77 LDFRSAQFDALKALQTPKQQLKLPVVAAYPLDNTQKCRHLLPESDVNRQTLV-----ARLKKANPSAAEAKAVA--------------------------------------------------------VKKVPAPATPSLFEQLAETYLDGPFRVLRHCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFI 220          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: G4ZDB3_PHYSP (Sm domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDB3_PHYSP)

HSP 1 Score: 77.0 bits (188), Expect = 1.580e-11
Identity = 66/206 (32.04%), Postives = 84/206 (40.78%), Query Frame = 2
Query: 1646 LDFRSPHFDAALALRTPG--LRPPVLNVQALDNTSKFVHLLPGAAPPRER---RAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYI 2248
            LDFRS  FDA  AL+ P   L  PV     LDN  K  HLLP +   R+    R K  + + A    AV+ ++SAV A                                                                    +A     GP+ +L +   ER RV V++RRVNSVRGTC G L AFDKHMN+VLLDVT+ ++
Sbjct:   81 LDFRSAQFDALKALQAPKKLLNLPVATAYPLDNIQKCRHLLPESDASRQTLVTRPKKASPSVAEAKAAVTKKTSAVTATPSLFEQ-------------------------------------------------------------LADTYLEGPFRVLRRCFLERMRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQEFV 225          
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.300e-11
Identity = 87/318 (27.36%), Postives = 116/318 (36.48%), Query Frame = 2
Query: 1319 RVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGI--GLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDPGPPDPAARLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRER---RAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYIAWV 2257
            R+V FY  H P+ ++   + EI+  + G+E  L AKL KKYG    L T A  A   +       V  +    G G                                   LD+RSP FDA +AL      P + +V  LDN +K   LLP + P       ++KP T    A                                                                   P+    P     + TIA     GP ++L   L+ R +V V+IRRVNS+RGTC G L  FDKH N++LLDVTERY+  V
Sbjct:    8 RIVAFYEKHNPENVKN--IPEILRVFAGREDVLCAKLFKKYGCQPDLQTLAPVAAPVEYVYTPTYVPYEAQKAGSG----------------------------------PLDYRSPSFDATVALHERRPLPNMQSVMPLDNLNKCRPLLPESDPNYNGSIGQSKPKTKTAVA-------------------------------------------------------------------PKVAPAPQRPPLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLV 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V3_ECTSI1.700e-2130.29Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A6H5LBR8_9PHAE6.850e-2129.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4BUY2_PYTIN2.370e-1832.48Sm domain-containing protein n=1 Tax=Pythium insid... [more]
A0A836CP56_9STRA3.460e-1736.83Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A8K1FHD1_PYTOL3.990e-1729.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
E1ZJN8_CHLVA8.600e-1331.07Sm domain-containing protein n=1 Tax=Chlorella var... [more]
V9F378_PHYPR1.010e-1133.01Sm domain-containing protein n=9 Tax=Phytophthora ... [more]
D0MT91_PHYIT1.120e-1133.17Sm domain-containing protein n=2 Tax=Phytophthora ... [more]
G4ZDB3_PHYSP1.580e-1132.04Sm domain-containing protein (Fragment) n=1 Tax=Ph... [more]
A0A1V9YMI3_9STRA2.300e-1127.36Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig158contigP-wetherbeei_contig158:4194..7805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009032313.1
PFAMsLSM
Model size3068
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.72e-17
EggNOG OGs28JKK@1|root,2QRZV@2759|Eukaryota
Ec32 ortholog descriptionProtein with LSm motif. Putative LSm11
Ec32 orthologEc-23_002180.1
DescriptionLSM domain
Cds size1698
COG categoryJ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig158.4.1prot_P-wetherbeei_contig158.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig158 5545..7453 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.8878095-UTR-P-wetherbeei_contig158:4193..44601683186067.8878095-UTR-P-wetherbeei_contig158:4193..4460Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig158 4194..4460 +
1683186067.897141-UTR-P-wetherbeei_contig158:4650..49181683186067.897141-UTR-P-wetherbeei_contig158:4650..4918Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig158 4651..4918 +
1683186067.9049246-UTR-P-wetherbeei_contig158:5061..55441683186067.9049246-UTR-P-wetherbeei_contig158:5061..5544Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig158 5062..5544 +
1683186067.9303896-UTR-P-wetherbeei_contig158:7453..78051683186067.9303896-UTR-P-wetherbeei_contig158:7453..7805Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig158 7454..7805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.9154189-CDS-P-wetherbeei_contig158:5544..66891683186067.9154189-CDS-P-wetherbeei_contig158:5544..6689Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig158 5545..6689 +
1683186067.9230833-CDS-P-wetherbeei_contig158:6900..74531683186067.9230833-CDS-P-wetherbeei_contig158:6900..7453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig158 6901..7453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig158.4.1

>prot_P-wetherbeei_contig158.4.1 ID=prot_P-wetherbeei_contig158.4.1|Name=mRNA_P-wetherbeei_contig158.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=566bp
METGDTEAGIRAGGSGGGSTAGEAQDEGGSSGNVPAETTAIGGRSGDNGG
FGGSGDGCSGGGSGDGCSGGGSGDGCGDSGGGWSGSAAGLEPPRRTSLWA
RVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDAD
SAEVADACDRFGLVDPDICGRGGGGDDGAGDGGTEGGDAGGGEAAGILVD
PGPPDPAARLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPG
AAPPRERRAKPPTGARAAEAGAVSSRSSAVGAAAGVAAATGAGAGLTAAA
IAAAVAGVAMDVAAEAPAAATAGAAAGAAAAAAAVPRARNEPFAGNPVTT
IASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNM
VLLDVTERYIAWVLPAIAQATAGGGEARPGDRGGSGGDGGGSRRDDGGGH
SWSYGGRSWSYGGRSGGGGASAAGGSAAVRSGIKGPAGGGSVAGGGGSSG
GESGGGSAAGGAAPVVGSPIGAPGGKLGVTQAELDVHPGLMPVQRQRYLR
QLLIRGDNVVLVVRL*
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mRNA from alignment at P-wetherbeei_contig158:4194..7805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig158.4.1 ID=mRNA_P-wetherbeei_contig158.4.1|Name=mRNA_P-wetherbeei_contig158.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3612bp|location=Sequence derived from alignment at P-wetherbeei_contig158:4194..7805+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGACGCGCACGAAAGGAGAGCAGCACCCCGACGCCGACGCATTGGCAA AGAACGAAATCATCGCCCACTATTGAATGGGGGACGCCTTTCCCGATGTC GACGCGAGAGACTTGGAAAGGACTCGTTTGAGCTTCCAGCGGTTTGCTGC GCAGGTGTCACGGTGTGACGACGACAAGGGAGAGGGCGGAACTTCCATCA CATGTCGTTTTCTGCCTCTCGCAACTTCCCTTCTCGCCATCCAGAAGATT GAGCGCCGAGACCTGAGGTGAGAGAGGAGATGCAAGACGAGGGCAAAAGG TTTCTCGACAACAACTCACTGGCTCGTGAGTATATTCACAAAGAAAAGAT TGTTTAGGAAAAGGTTAGATGCTCGCGTTGGAAGATGCTTTTTCAGTCAA CACGTTGCCCGTTGCATCCCTATCACCCATCATCGGTTTCTTTCCCTTGT AACACAGGAGCTGCACGTTCTACGACTTGACGGGATCCGGAGGCCGCGCT TGCCTCTGCGCGTCCCTCTTGTCGCAGTGGTCGTATTTGCATTCGTTAGA GGGCACTCAGGCCAAGCAACAGGCTTCCGCCCGCCTCCGACTGACTGCCA AGCGCGATAGCACTGCTCTCACCACCGGAGTAGCCGTGCAGCTGTGGCAC AATCATTTGGCGACGTTCAAGAGCGCCGACTTTTTCGACGCCGACGTCGT TTTTTTTGACGCGACGCTTTACGAGGTGAATCGCAAAGTCGACTGGCAGA GAAGGGATGAAACCTTACGGTTTCAGCTCACTGAGAGAGATAGGGCCGAC TTGCGACTGACAACACGCTCTTCTCTTTTTGTCAACTCTGTTGCCTTGCT ATTACCGTCGTCTGACAGGGTTGGGACGAAGCGGTGCTGCTACGCTGCCT GCAGGGACGGCTGGCCGCGTTGCAGTCCGGCTCGTACGCCATTCTGCTGA CTTTGGGCACCTCCTGTCCACTACCGGTTGCATCTGGAACTGAAAGGGCC TCGCAGAGCGAGAGAACCGGCGGCGGCGCTTTGAGCGGCGACGGCGGCAG TGGCGGAGGTGGCGGATTCCGGCTCCTCTTTCGATTCGTCGGGGACCGCG GCGGCGATCGGGAATTTGTTTGCTGGCTGTTCCAGACCTTGTCGTCCAGC AAAGACCATCGCCTCAGAAAAGAAGCGGCTGGATAGTACGGAGCATTGTT CTCTGGCGTACGAGTGTCGCCGGTGGAAGTATTGCCGCTGGCACCCTTGC TCATTCCCTAAAGCTTGCGGCGGTTGTGTTTGGACGCGGGGTTGGGGTTC TTGCGCCCCTCACTCTTGTCAAATAAAGTTGAGGAGAGCGGTCAGAGTGC GATGGAAACTGGTGACACGGAGGCTGGCATTCGTGCTGGCGGCAGTGGCG GCGGCAGCACCGCCGGTGAGGCGCAAGATGAAGGCGGCAGCTCTGGTAAC GTACCGGCGGAAACTACTGCAATCGGCGGCCGCAGCGGCGACAACGGCGG TTTCGGCGGCAGCGGCGACGGCTGTAGCGGCGGCGGGAGCGGCGACGGCT GTAGCGGCGGCGGGAGCGGCGACGGCTGCGGTGATAGCGGCGGCGGGTGG AGCGGGAGCGCTGCCGGACTTGAACCTCCCCGCCGCACGTCCCTCTGGGC GCGGGTGGTGCGCTTTTACGTTGTCCATCAGCCGGACCGCCTCGAGGCGC CGCTCCTCGCCGAAATCGTTACGAAATACCGCGGCAAGGAAGCGGCGCTT GACGCCAAGCTGGTGAAAAAGTACGGCATCGGACTTCTCACGGACGCCGA CTCCGCCGAAGTCGCCGACGCTTGCGATCGCTTCGGACTGGTCGATCCCG ACATTTGCGGTAGAGGTGGCGGTGGGGACGATGGCGCTGGCGATGGCGGC ACTGAGGGCGGCGATGCCGGCGGTGGCGAAGCAGCGGGCATCCTTGTAGA TCCGGGGCCGCCGGATCCGGCGGCGCGTCTTGATTTCCGCTCGCCGCATT TCGACGCGGCGTTGGCACTCAGGACGCCCGGCTTGCGTCCGCCAGTGCTG AACGTCCAGGCGCTGGACAATACCTCCAAATTCGTTCACCTGTTGCCGGG CGCGGCGCCGCCGCGGGAACGCCGGGCGAAGCCGCCGACAGGGGCAAGAG CTGCCGAGGCCGGCGCGGTGTCATCGCGGTCGTCAGCAGTGGGAGCGGCG GCTGGCGTTGCTGCAGCGACGGGTGCAGGCGCTGGGTTGACCGCAGCGGC GATTGCGGCGGCGGTAGCAGGCGTGGCGATGGATGTGGCCGCAGAAGCGC CGGCTGCCGCCACTGCTGGTGCGGCTGCGGGCGCAGCAGCCGCCGCTGCG GCGGTACCGCGCGCAAGAAATGAGCCGTTTGCGGGGAACCCTGTGACTAC AATCGCGTCCGGCCTTCGCACCGGCCCGTACAGCCTCTTGACGAAAAGCC TCGAGGAGCGCCATCGCGTCCGCGTCATGATTCGGCGGGTGAACAGGTTG GTGGAGGTTGTTTTGACCTTCTCTCTGTGACGCGTTGTGCGCAAATTGAG AGCGAGCGTGGTTGATTCTGCCTCCGCCGGATTGCGTCCGGTGCTTCCTT TTAGTGATTGCCTGGCTCGGAACGGCCGCTATCGCTACAATGGCAGGTGA CTATATCTTGTAACCCACAGTTCGCACCCATGTCATCGCCTCCTCTCCTG GCGACAGCGTTCGCGGTACGTGCGAGGGCCTGCTGCTGGCGTTTGACAAG CACATGAACATGGTCCTCCTCGACGTTACTGAAAGGTACATCGCCTGGGT CCTCCCGGCCATAGCCCAAGCTACCGCCGGTGGAGGCGAGGCACGGCCCG GGGACCGCGGCGGCAGTGGTGGCGACGGCGGCGGCAGCCGGCGGGACGAT GGCGGCGGTCACAGCTGGAGTTACGGCGGTCGCAGCTGGAGTTACGGCGG TCGCAGCGGCGGTGGCGGCGCGTCTGCTGCTGGCGGGAGCGCGGCAGTTC GCAGCGGCATTAAAGGTCCGGCAGGTGGCGGGAGTGTGGCAGGCGGTGGC GGAAGCAGCGGCGGCGAAAGCGGCGGCGGCAGCGCGGCGGGCGGTGCAGC GCCAGTGGTAGGTAGTCCGATTGGCGCTCCTGGCGGCAAGCTGGGGGTTA CGCAGGCGGAGCTGGACGTGCACCCGGGTCTAATGCCGGTCCAGCGGCAG CGCTACCTGCGGCAGCTCCTGATCCGCGGGGACAATGTGGTGTTGGTGGT GCGTCTCTGACTTTGCCCCTTGCGCGCTTCGTTCAGCGTGCCTGCTCGCT TGGTCCCTTCTGCGTTGCGTCTGGCCAATCTGGGATGTAGCAGCAGCAAT TGCCACGTCGGCGGTTAGACCGCAGCGCTGTTGCGGCTTCTGTGTGTGTC ACGTCTTGAACGTTACGTTGCCGTGATTGGTAGAATGTGTACTAGATGCG GCGTAGGTCATCTGGAAATGGTGCCGTCTCCCAAAAAGGTGCAGGGTCAG AGAGAGCGGCGGGCACTCGCGGCGCTATGAGCGAGAGTGACCAGCCCAAG AAAACGAGGTCACCATCACATTGCGGCAAAGATTGATTGAAGCACAAGCA TCACCATTTGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig158:4194..7805+

>mRNA_P-wetherbeei_contig158.4.1 ID=mRNA_P-wetherbeei_contig158.4.1|Name=mRNA_P-wetherbeei_contig158.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig158:4194..7805+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAACTGGTGACACGGAGGCTGGCATTCGTGCTGGCGGCAGTGGCGG
CGGCAGCACCGCCGGTGAGGCGCAAGATGAAGGCGGCAGCTCTGGTAACG
TACCGGCGGAAACTACTGCAATCGGCGGCCGCAGCGGCGACAACGGCGGT
TTCGGCGGCAGCGGCGACGGCTGTAGCGGCGGCGGGAGCGGCGACGGCTG
TAGCGGCGGCGGGAGCGGCGACGGCTGCGGTGATAGCGGCGGCGGGTGGA
GCGGGAGCGCTGCCGGACTTGAACCTCCCCGCCGCACGTCCCTCTGGGCG
CGGGTGGTGCGCTTTTACGTTGTCCATCAGCCGGACCGCCTCGAGGCGCC
GCTCCTCGCCGAAATCGTTACGAAATACCGCGGCAAGGAAGCGGCGCTTG
ACGCCAAGCTGGTGAAAAAGTACGGCATCGGACTTCTCACGGACGCCGAC
TCCGCCGAAGTCGCCGACGCTTGCGATCGCTTCGGACTGGTCGATCCCGA
CATTTGCGGTAGAGGTGGCGGTGGGGACGATGGCGCTGGCGATGGCGGCA
CTGAGGGCGGCGATGCCGGCGGTGGCGAAGCAGCGGGCATCCTTGTAGAT
CCGGGGCCGCCGGATCCGGCGGCGCGTCTTGATTTCCGCTCGCCGCATTT
CGACGCGGCGTTGGCACTCAGGACGCCCGGCTTGCGTCCGCCAGTGCTGA
ACGTCCAGGCGCTGGACAATACCTCCAAATTCGTTCACCTGTTGCCGGGC
GCGGCGCCGCCGCGGGAACGCCGGGCGAAGCCGCCGACAGGGGCAAGAGC
TGCCGAGGCCGGCGCGGTGTCATCGCGGTCGTCAGCAGTGGGAGCGGCGG
CTGGCGTTGCTGCAGCGACGGGTGCAGGCGCTGGGTTGACCGCAGCGGCG
ATTGCGGCGGCGGTAGCAGGCGTGGCGATGGATGTGGCCGCAGAAGCGCC
GGCTGCCGCCACTGCTGGTGCGGCTGCGGGCGCAGCAGCCGCCGCTGCGG
CGGTACCGCGCGCAAGAAATGAGCCGTTTGCGGGGAACCCTGTGACTACA
ATCGCGTCCGGCCTTCGCACCGGCCCGTACAGCCTCTTGACGAAAAGCCT
CGAGGAGCGCCATCGCGTCCGCGTCATGATTCGGCGGGTGAACAGCGTTC
GCGGTACGTGCGAGGGCCTGCTGCTGGCGTTTGACAAGCACATGAACATG
GTCCTCCTCGACGTTACTGAAAGGTACATCGCCTGGGTCCTCCCGGCCAT
AGCCCAAGCTACCGCCGGTGGAGGCGAGGCACGGCCCGGGGACCGCGGCG
GCAGTGGTGGCGACGGCGGCGGCAGCCGGCGGGACGATGGCGGCGGTCAC
AGCTGGAGTTACGGCGGTCGCAGCTGGAGTTACGGCGGTCGCAGCGGCGG
TGGCGGCGCGTCTGCTGCTGGCGGGAGCGCGGCAGTTCGCAGCGGCATTA
AAGGTCCGGCAGGTGGCGGGAGTGTGGCAGGCGGTGGCGGAAGCAGCGGC
GGCGAAAGCGGCGGCGGCAGCGCGGCGGGCGGTGCAGCGCCAGTGGTAGG
TAGTCCGATTGGCGCTCCTGGCGGCAAGCTGGGGGTTACGCAGGCGGAGC
TGGACGTGCACCCGGGTCTAATGCCGGTCCAGCGGCAGCGCTACCTGCGG
CAGCTCCTGATCCGCGGGGACAATGTGGTGTTGGTGGTGCGTCTCTGA
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