mRNA_P-wetherbeei_contig158.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.700e-21 Identity = 113/373 (30.29%), Postives = 144/373 (38.61%), Query Frame = 2
Query: 1301 RTSLWARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGI---LVDPGPPDPAAR-------------------LDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLP----------------------------GAAPPRERRAKPPTGARAAEAGAV---SSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLR-TGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYIAWV 2257
RTSLW+R+V FY V++ D+L A ++AEIV KY KE L A+L+KKY L S ++ FG+ D D+ RG D AAG +P AR L+FRS FD AL LRPP ALDN +KF +LP AA R G R+ AG + ++ S G+ E F NPV I +GPYSLL + EE R VMIRRVNS+RGTC GL+ AFD+HMN++L+DV E Y A+V
Sbjct: 5 RTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLA-RGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERF--NPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFV 374
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE) HSP 1 Score: 109 bits (273), Expect = 6.850e-21 Identity = 111/380 (29.21%), Postives = 140/380 (36.84%), Query Frame = 2
Query: 1301 RTSLWARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGIL---VDPGPPDPAAR-------------------LDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPT--------------------------------------GARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLR-TGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYIAWV 2257
RTSLW+R+V FY V++ D+L ++AEIV KY KE L A+L+KKYG L S ++ FG+ D D+ RG D AG + AAR L+FRS FD AL LRPP ALDN +KF +LP KPPT G R AG V ++A + NPV I +GPYSLL + EE R VMIRRVNS+RGTC GL+ AFD+HMN++L+DV E Y A+V
Sbjct: 5 RTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLA-RGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLP----------KPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFV 373
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A2D4BUY2_PYTIN (Sm domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY2_PYTIN) HSP 1 Score: 97.8 bits (242), Expect = 2.370e-18 Identity = 102/314 (32.48%), Postives = 124/314 (39.49%), Query Frame = 2
Query: 1316 ARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGL---LTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDPGPPDPAARLDFRSPHFDAALALRTPGLRPPVLN-VQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVT--TIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTE 2239
AR+ FY H P + +AEIV+KYRGKEA L AKL KKYG+ T A + E + A R D A D P LDFRSP FDA AL + LRPPV + V LDN K LLP P + P A A +++ +A + A P T+A GP+S+L + ER RVRV++RRVNSVRG C G L AFDKHMN+VLLDVTE
Sbjct: 10 ARLRAFYATHNPGNQQN--IAEIVSKYRGKEAVLCAKLRKKYGVAPDLPTTPAITKEASAAATRPPEYDA----------------------AYTPFCAPETRDDDP------LDFRSPAFDALQALSSWTLRPPVSDGVFPLDNIHKCRRLLPTTDPHYQSVVIGPAQATAKRQQRQATKPAA-------------------------------------------------------------DVTAPKPTLFETLADTYLDGPFSVLRRCFLERKRVRVVLRRVNSVRGVCVGFLKAFDKHMNLVLLDVTE 232
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.460e-17 Identity = 116/315 (36.83%), Postives = 138/315 (43.81%), Query Frame = 2
Query: 1367 PLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDP-----------GPPDPAA----------RLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLR-TGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERY 2245
PLL +I K+ ++ L AKL KKY L A V D C RFGL DP+ G XXXXXXXXXXXXXXXX P G P A +L+FRS HF+A AL+ G+ PV N Q LDN +KF LLP P +R P A++ A RS+A A + +P A V +A G + TGP S L + E RV VMIR VNSVRG C GLL AFDKH NMV++DVTERY
Sbjct: 2 PLL-QIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPEEAGAADAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASLGVPSQQADQQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADHP--DRTVTRPPKAQSGTAQQRHMRSAAAEAQPTAHERQASTQQHMQ----------------------------------------QADPLAL--VMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERY 271
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL) HSP 1 Score: 94.4 bits (233), Expect = 3.990e-17 Identity = 94/316 (29.75%), Postives = 122/316 (38.61%), Query Frame = 2
Query: 1316 ARVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGIGLLTDADSAEVADA----CDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDPGPPDPAARLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRA----KPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTE 2239
AR+ FY + P + +AEIV KYRGKEAAL A+L KKYG ++S D DP + + P LDFRS FDA AL T ++P V +V LDN K HLLP + P +R KP + + A +S + P A + +A GP+++L + ER RV+V+IRRVNS+RGTC G L AFDKHMN+VLLDVTE
Sbjct: 10 ARLRAFYAMVNPGNEQN--IAEIVRKYRGKEAALCARLQKKYGKAPDLVSESTPTMDTKANPVKAVSAYDPHY-----------------------EVFKAVECEESP------LDFRSSAFDALKALTTASVKPLVSSVYPLDNIHKCRHLLPESDPNHQRLVTVTPKPVAPKPSTKTQAAASTDT--------------------------------------------------------------PPPADGFFSALADTYLDGPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTE 232
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: E1ZJN8_CHLVA (Sm domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJN8_CHLVA) HSP 1 Score: 79.7 bits (195), Expect = 8.600e-13 Identity = 64/206 (31.07%), Postives = 84/206 (40.78%), Query Frame = 2
Query: 1628 PDPAARLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERY 2245
PDPA LDF SP FD AL+ GLRPPV + DN + LLP P A+ P ++ A+ A + + + NPV IA ++ GP LL + ++R RVRV+ R VRG+ EGLL+AFDKHMN+VL DV E+Y
Sbjct: 8 PDPA--LDFFSPRFDPLRALQAEGLRPPVPGARPQDNVFRCRFLLPPDHPDAWNEARRPGKSKEAQEAAQREK----------------------------------------------------LRISYVHQKQERQQVRTNPVDQIAERVQHGPLLLLKRWYQQRSRVRVVTRHARGVRGSSEGLLVAFDKHMNLVLRDVEEQY 159
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: V9F378_PHYPR (Sm domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F378_PHYPR) HSP 1 Score: 78.2 bits (191), Expect = 1.010e-11 Identity = 68/206 (33.01%), Postives = 84/206 (40.78%), Query Frame = 2
Query: 1646 LDFRSPHFDAALALRTPG--LRPPVLNVQALDNTSKFVHLLPGAAPPRER---RAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYI 2248
LDFRS FDA AL+TP L+ PV LDN K HLLP R+ R K P+ + A AV ++ A P + +A GP+ +L + ER RV V+IRRVNSVRGTC G L AFDKHMN+VLLDVT+ +I
Sbjct: 92 LDFRSAQFDALKALQTPKDQLKLPVATAHPLDNIQKCRHLLPELDVNRQTLVVRPKKPSPSAADAKAAVVKKAPA--------------------------------------------------------------PATPSLFEQLADTYLEGPFRVLRRCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFI 235
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: D0MT91_PHYIT (Sm domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT91_PHYIT) HSP 1 Score: 77.8 bits (190), Expect = 1.120e-11 Identity = 68/205 (33.17%), Postives = 85/205 (41.46%), Query Frame = 2
Query: 1646 LDFRSPHFDAALALRTPG--LRPPVLNVQALDNTSKFVHLLPGAAPPRERRAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNP--VTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYI 2248
LDFRS FDA AL+TP L+ PV+ LDNT K HLLP + R+ AR +A ++ + AV + P P +A GP+ +L ER RV V+IRRVNSVRGTC G L AFDKHMN+VLLDVT+ +I
Sbjct: 77 LDFRSAQFDALKALQTPKQQLKLPVVAAYPLDNTQKCRHLLPESDVNRQTLV-----ARLKKANPSAAEAKAVA--------------------------------------------------------VKKVPAPATPSLFEQLAETYLDGPFRVLRHCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDFI 220
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: G4ZDB3_PHYSP (Sm domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDB3_PHYSP) HSP 1 Score: 77.0 bits (188), Expect = 1.580e-11 Identity = 66/206 (32.04%), Postives = 84/206 (40.78%), Query Frame = 2
Query: 1646 LDFRSPHFDAALALRTPG--LRPPVLNVQALDNTSKFVHLLPGAAPPRER---RAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYI 2248
LDFRS FDA AL+ P L PV LDN K HLLP + R+ R K + + A AV+ ++SAV A +A GP+ +L + ER RV V++RRVNSVRGTC G L AFDKHMN+VLLDVT+ ++
Sbjct: 81 LDFRSAQFDALKALQAPKKLLNLPVATAYPLDNIQKCRHLLPESDASRQTLVTRPKKASPSVAEAKAAVTKKTSAVTATPSLFEQ-------------------------------------------------------------LADTYLEGPFRVLRRCFLERMRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQEFV 225
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.300e-11 Identity = 87/318 (27.36%), Postives = 116/318 (36.48%), Query Frame = 2
Query: 1319 RVVRFYVVHQPDRLEAPLLAEIVTKYRGKEAALDAKLVKKYGI--GLLTDADSAEVADACDRFGLVDPDICGRGGGGDDXXXXXXXXXXXXXXXXAAGILVDPGPPDPAARLDFRSPHFDAALALRTPGLRPPVLNVQALDNTSKFVHLLPGAAPPRER---RAKPPTGARAAEAGAVSSRSSAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRARNEPFAGNPVTTIASGLRTGPYSLLTKSLEERHRVRVMIRRVNSVRGTCEGLLLAFDKHMNMVLLDVTERYIAWV 2257
R+V FY H P+ ++ + EI+ + G+E L AKL KKYG L T A A + V + G G LD+RSP FDA +AL P + +V LDN +K LLP + P ++KP T A P+ P + TIA GP ++L L+ R +V V+IRRVNS+RGTC G L FDKH N++LLDVTERY+ V
Sbjct: 8 RIVAFYEKHNPENVKN--IPEILRVFAGREDVLCAKLFKKYGCQPDLQTLAPVAAPVEYVYTPTYVPYEAQKAGSG----------------------------------PLDYRSPSFDATVALHERRPLPNMQSVMPLDNLNKCRPLLPESDPNYNGSIGQSKPKTKTAVA-------------------------------------------------------------------PKVAPAPQRPPLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLV 222 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig158.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig158.4.1 >prot_P-wetherbeei_contig158.4.1 ID=prot_P-wetherbeei_contig158.4.1|Name=mRNA_P-wetherbeei_contig158.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=566bp METGDTEAGIRAGGSGGGSTAGEAQDEGGSSGNVPAETTAIGGRSGDNGGback to top mRNA from alignment at P-wetherbeei_contig158:4194..7805+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig158.4.1 ID=mRNA_P-wetherbeei_contig158.4.1|Name=mRNA_P-wetherbeei_contig158.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3612bp|location=Sequence derived from alignment at P-wetherbeei_contig158:4194..7805+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig158:4194..7805+ >mRNA_P-wetherbeei_contig158.4.1 ID=mRNA_P-wetherbeei_contig158.4.1|Name=mRNA_P-wetherbeei_contig158.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig158:4194..7805+ (Phaeothamnion wetherbeei SAG_119_79)back to top |