mRNA_P-wetherbeei_contig158.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig158.3.1
Unique NamemRNA_P-wetherbeei_contig158.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig158.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig158contigP-wetherbeei_contig158:3196..4149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size954
Hectar predicted targeting categoryother localisation
Exons1
Cds size933
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.8524776-CDS-P-wetherbeei_contig158:3195..41281683186067.8524776-CDS-P-wetherbeei_contig158:3195..4128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig158 3196..4128 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.863806-UTR-P-wetherbeei_contig158:4128..41491683186067.863806-UTR-P-wetherbeei_contig158:4128..4149Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig158 4129..4149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig158.3.1prot_P-wetherbeei_contig158.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig158 3196..4128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig158.3.1

>prot_P-wetherbeei_contig158.3.1 ID=prot_P-wetherbeei_contig158.3.1|Name=mRNA_P-wetherbeei_contig158.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=311bp
MSSILSLFSDERSREAVELQVLREKAREEWINCSYSWLASTEAAHAPDAT
PLTAERLSPVQQMLASLFSPSPLPSAQKSDSAINGIGANASMRASLSLST
LGGASPVLNGHRTAATTAYAAGANALLSYGGDAPSGKISRGESGIGYGDG
RSGSGDDGGGGGSEASPIPVLEGDGADTGWGFLDVGARLGVGASDSHAVV
RCPASEVRGLTLEETRLGAAVLTVTAGSPAARAGVRPGSVLMDINGHGVL
AEEFETVLRRLQKLRLARPLALRFRHGGATLDAVFWWQGDVGIEWACCGD
FARVKSVKPWS
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mRNA from alignment at P-wetherbeei_contig158:3196..4149-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig158.3.1 ID=mRNA_P-wetherbeei_contig158.3.1|Name=mRNA_P-wetherbeei_contig158.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig158:3196..4149- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGAGGCGCGAAATAGCGCATGTCGTCGATCCTGAGCCTTTTCTCAGA
CGAGAGAAGCCGGGAAGCCGTCGAATTGCAAGTCCTCCGAGAGAAAGCGC
GAGAGGAATGGATAAATTGCAGCTACAGCTGGTTGGCTTCGACGGAAGCT
GCCCATGCGCCGGACGCCACGCCTCTCACCGCCGAAAGACTTTCTCCTGT
CCAGCAAATGTTGGCATCACTCTTTTCGCCTTCACCCCTTCCGAGCGCGC
AGAAGAGTGATTCGGCGATTAACGGGATCGGCGCGAACGCATCGATGCGA
GCGTCCCTATCGCTTTCCACTCTCGGAGGAGCTAGCCCGGTCTTGAACGG
GCACCGTACCGCAGCGACGACTGCCTACGCCGCCGGGGCCAACGCCTTGC
TCAGCTACGGAGGCGATGCACCGTCGGGGAAAATATCCAGGGGCGAAAGC
GGCATCGGGTACGGGGACGGCCGCAGCGGAAGTGGCGACGACGGCGGCGG
GGGTGGCAGCGAAGCCTCCCCCATCCCGGTCCTCGAAGGCGACGGGGCTG
ACACCGGGTGGGGCTTCCTGGACGTCGGGGCCCGCCTCGGCGTCGGCGCC
TCTGACAGCCATGCCGTCGTCCGCTGCCCGGCGTCGGAGGTCCGTGGGCT
GACGCTCGAAGAGACGCGGCTGGGCGCGGCGGTCCTCACCGTGACCGCCG
GCAGCCCGGCCGCCCGTGCCGGCGTCCGTCCGGGGAGCGTCCTCATGGAC
ATCAACGGGCACGGCGTGCTCGCAGAGGAGTTCGAGACAGTCCTGCGGCG
CCTGCAGAAGCTGCGGCTGGCGCGGCCGCTGGCGTTGCGCTTCCGCCACG
GCGGTGCGACACTTGATGCCGTTTTTTGGTGGCAGGGTGATGTCGGCATC
GAGTGGGCCTGCTGCGGCGACTTCGCCCGTGTCAAAAGCGTCAAGCCGTG
GAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig158:3196..4149-

>mRNA_P-wetherbeei_contig158.3.1 ID=mRNA_P-wetherbeei_contig158.3.1|Name=mRNA_P-wetherbeei_contig158.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=933bp|location=Sequence derived from alignment at P-wetherbeei_contig158:3196..4149- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCGATCCTGAGCCTTTTCTCAGACGAGAGAAGCCGGGAAGCCGT
CGAATTGCAAGTCCTCCGAGAGAAAGCGCGAGAGGAATGGATAAATTGCA
GCTACAGCTGGTTGGCTTCGACGGAAGCTGCCCATGCGCCGGACGCCACG
CCTCTCACCGCCGAAAGACTTTCTCCTGTCCAGCAAATGTTGGCATCACT
CTTTTCGCCTTCACCCCTTCCGAGCGCGCAGAAGAGTGATTCGGCGATTA
ACGGGATCGGCGCGAACGCATCGATGCGAGCGTCCCTATCGCTTTCCACT
CTCGGAGGAGCTAGCCCGGTCTTGAACGGGCACCGTACCGCAGCGACGAC
TGCCTACGCCGCCGGGGCCAACGCCTTGCTCAGCTACGGAGGCGATGCAC
CGTCGGGGAAAATATCCAGGGGCGAAAGCGGCATCGGGTACGGGGACGGC
CGCAGCGGAAGTGGCGACGACGGCGGCGGGGGTGGCAGCGAAGCCTCCCC
CATCCCGGTCCTCGAAGGCGACGGGGCTGACACCGGGTGGGGCTTCCTGG
ACGTCGGGGCCCGCCTCGGCGTCGGCGCCTCTGACAGCCATGCCGTCGTC
CGCTGCCCGGCGTCGGAGGTCCGTGGGCTGACGCTCGAAGAGACGCGGCT
GGGCGCGGCGGTCCTCACCGTGACCGCCGGCAGCCCGGCCGCCCGTGCCG
GCGTCCGTCCGGGGAGCGTCCTCATGGACATCAACGGGCACGGCGTGCTC
GCAGAGGAGTTCGAGACAGTCCTGCGGCGCCTGCAGAAGCTGCGGCTGGC
GCGGCCGCTGGCGTTGCGCTTCCGCCACGGCGGTGCGACACTTGATGCCG
TTTTTTGGTGGCAGGGTGATGTCGGCATCGAGTGGGCCTGCTGCGGCGAC
TTCGCCCGTGTCAAAAGCGTCAAGCCGTGGAGC
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