mRNA_P-wetherbeei_contig15798.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15798.1.1
Unique NamemRNA_P-wetherbeei_contig15798.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15798contigP-wetherbeei_contig15798:131..1387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1259
Hectar predicted targeting categoryother localisation
Exons1
Cds size1236
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.7189069-UTR-P-wetherbeei_contig15798:130..1511683186067.7189069-UTR-P-wetherbeei_contig15798:130..151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15798 131..151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.7339268-CDS-P-wetherbeei_contig15798:151..13871683186067.7339268-CDS-P-wetherbeei_contig15798:151..1387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15798 152..1387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15798.1.1prot_P-wetherbeei_contig15798.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15798 152..1387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15798.1.1

>prot_P-wetherbeei_contig15798.1.1 ID=prot_P-wetherbeei_contig15798.1.1|Name=mRNA_P-wetherbeei_contig15798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp
MQRYYSNNVTDGERQDAIDLFLGTSTPERGGGSGAGGSTAAAGSGGGSDL
ARRLEDLLHSGGSNSAASGGGGGGAPGGMETVAASAAARTTAAASRLEEE
MRARDETELRQEEAAAAAGPGAWHPPLRRRLLEPDNRRPSPLSSSSTSVP
PAATAGGGAAAGGASFSSFGGSGGGGGGGGFGSTTGARRRGPFWHDAHQP
GQLTCFDRLCAYDFNVSCLDAAAVELLEALPEPKGPAGAAIDAYLAASAV
SALEQENATRDVQAAAAVAQRAGIPVDDGRGSPDGGWGASGASTNGSSGS
VTEKAPQEALYQRYLMLEATLSLADGGIGVAQVEKWSAAAGAAAAKVARS
AAVEAAATTETGNLANGTATATAGAADAVAIATMDGSRPGEPADSRLLAA
PPPLRPGARAQL
back to top

mRNA from alignment at P-wetherbeei_contig15798:131..1387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15798.1.1 ID=mRNA_P-wetherbeei_contig15798.1.1|Name=mRNA_P-wetherbeei_contig15798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1257bp|location=Sequence derived from alignment at P-wetherbeei_contig15798:131..1387+ (Phaeothamnion wetherbeei SAG_119_79)
GCTAAGAACGCGCTCGTGGCCATGCAACGGTACTACTCAAACAACGTCAC
GGACGGGGAGAGGCAAGACGCCATCGACTTGTTCTTGGGGACTTCGACCC
CGGAGCGAGGCGGTGGCAGCGGCGCAGGTGGCAGCACCGCCGCCGCCGGC
TCTGGCGGGGGCAGCGATCTGGCTCGCCGCTTAGAGGACTTGCTGCACAG
CGGCGGCAGCAATTCAGCTGCATCCGGCGGCGGCGGCGGCGGCGCTCCCG
GCGGAATGGAGACTGTAGCGGCATCGGCAGCGGCGCGGACGACGGCAGCG
GCGAGCCGCCTCGAGGAGGAAATGCGCGCGCGGGACGAGACGGAGCTGCG
GCAGGAGGAGGCGGCTGCGGCCGCGGGTCCGGGGGCGTGGCACCCGCCGC
TGCGGCGCCGGCTGCTGGAACCAGACAACCGACGCCCCTCGCCGCTCTCC
TCGTCTTCAACGTCGGTCCCTCCGGCGGCAACGGCAGGCGGTGGAGCGGC
AGCAGGCGGAGCGTCCTTCAGCAGTTTTGGCGGCAGTGGAGGCGGCGGCG
GAGGCGGCGGGTTTGGCAGCACCACCGGTGCTCGGCGGCGCGGGCCCTTT
TGGCACGACGCACACCAGCCGGGGCAGCTGACGTGCTTCGACCGGCTTTG
CGCCTATGACTTTAACGTCTCTTGCCTCGATGCGGCCGCAGTCGAACTGC
TGGAAGCGCTTCCGGAGCCGAAGGGCCCCGCCGGTGCCGCCATCGATGCC
TATCTGGCCGCCTCGGCCGTTTCGGCGCTCGAGCAAGAAAACGCCACTCG
TGATGTGCAGGCGGCGGCGGCAGTAGCGCAACGAGCAGGAATCCCTGTTG
ATGACGGCCGCGGCAGCCCGGATGGAGGATGGGGAGCCTCCGGCGCAAGC
ACCAATGGCAGCAGCGGCAGCGTCACCGAAAAAGCGCCACAAGAGGCTCT
CTATCAACGGTACCTGATGCTGGAAGCCACGCTATCTTTGGCGGACGGCG
GCATCGGCGTGGCGCAGGTAGAGAAGTGGAGCGCCGCGGCAGGTGCCGCC
GCAGCCAAGGTGGCGCGGTCGGCGGCGGTGGAAGCGGCGGCGACGACGGA
AACCGGAAATCTCGCGAATGGGACCGCCACAGCCACCGCCGGCGCGGCCG
ACGCCGTGGCCATCGCGACGATGGACGGCTCCCGTCCGGGCGAACCTGCC
GACAGCCGTCTGCTGGCAGCGCCGCCGCCGCTGCGGCCGGGTGCTCGAGC
GCAGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15798:131..1387+

>mRNA_P-wetherbeei_contig15798.1.1 ID=mRNA_P-wetherbeei_contig15798.1.1|Name=mRNA_P-wetherbeei_contig15798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig15798:131..1387+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACGGTACTACTCAAACAACGTCACGGACGGGGAGAGGCAAGACGC
CATCGACTTGTTCTTGGGGACTTCGACCCCGGAGCGAGGCGGTGGCAGCG
GCGCAGGTGGCAGCACCGCCGCCGCCGGCTCTGGCGGGGGCAGCGATCTG
GCTCGCCGCTTAGAGGACTTGCTGCACAGCGGCGGCAGCAATTCAGCTGC
ATCCGGCGGCGGCGGCGGCGGCGCTCCCGGCGGAATGGAGACTGTAGCGG
CATCGGCAGCGGCGCGGACGACGGCAGCGGCGAGCCGCCTCGAGGAGGAA
ATGCGCGCGCGGGACGAGACGGAGCTGCGGCAGGAGGAGGCGGCTGCGGC
CGCGGGTCCGGGGGCGTGGCACCCGCCGCTGCGGCGCCGGCTGCTGGAAC
CAGACAACCGACGCCCCTCGCCGCTCTCCTCGTCTTCAACGTCGGTCCCT
CCGGCGGCAACGGCAGGCGGTGGAGCGGCAGCAGGCGGAGCGTCCTTCAG
CAGTTTTGGCGGCAGTGGAGGCGGCGGCGGAGGCGGCGGGTTTGGCAGCA
CCACCGGTGCTCGGCGGCGCGGGCCCTTTTGGCACGACGCACACCAGCCG
GGGCAGCTGACGTGCTTCGACCGGCTTTGCGCCTATGACTTTAACGTCTC
TTGCCTCGATGCGGCCGCAGTCGAACTGCTGGAAGCGCTTCCGGAGCCGA
AGGGCCCCGCCGGTGCCGCCATCGATGCCTATCTGGCCGCCTCGGCCGTT
TCGGCGCTCGAGCAAGAAAACGCCACTCGTGATGTGCAGGCGGCGGCGGC
AGTAGCGCAACGAGCAGGAATCCCTGTTGATGACGGCCGCGGCAGCCCGG
ATGGAGGATGGGGAGCCTCCGGCGCAAGCACCAATGGCAGCAGCGGCAGC
GTCACCGAAAAAGCGCCACAAGAGGCTCTCTATCAACGGTACCTGATGCT
GGAAGCCACGCTATCTTTGGCGGACGGCGGCATCGGCGTGGCGCAGGTAG
AGAAGTGGAGCGCCGCGGCAGGTGCCGCCGCAGCCAAGGTGGCGCGGTCG
GCGGCGGTGGAAGCGGCGGCGACGACGGAAACCGGAAATCTCGCGAATGG
GACCGCCACAGCCACCGCCGGCGCGGCCGACGCCGTGGCCATCGCGACGA
TGGACGGCTCCCGTCCGGGCGAACCTGCCGACAGCCGTCTGCTGGCAGCG
CCGCCGCCGCTGCGGCCGGGTGCTCGAGCGCAGCTG
back to top