mRNA_P-wetherbeei_contig15769.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15769.1.1
Unique NamemRNA_P-wetherbeei_contig15769.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15769.1.1 vs. uniprot
Match: B4KE71_DROMO (Endonuclease III homolog n=4 Tax=mojavensis species complex TaxID=198037 RepID=B4KE71_DROMO)

HSP 1 Score: 55.1 bits (131), Expect = 3.710e-5
Identity = 33/113 (29.20%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:  366 KMADPDADFETRRFHLFVGVLLSSRCRYEVVRTAVAKLRRREGGLTMEAVSSWSADEAAALVSTVHYNKAKGQNLVESAQAIRSRHSGCVPRQEMELRALPGIGAALAKLFVA 704
            K AD +A+ +T+RFH+ VG++LSS+ + E    A+ +L+ +   LT   +     +E   L+  V + K K + L ++++ +  +++  +P    EL  LPG+G  +A + +A
Sbjct:  154 KCADANANEKTQRFHILVGLILSSQTKDETTFEAMNRLKAQT--LTPARLKDLPVEELERLLHPVSFYKNKAKYLKQTSEILVDKYNEDIPNNIKELLKLPGVGPKMAHICMA 264
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BLAST of mRNA_P-wetherbeei_contig15769.1.1 vs. uniprot
Match: A0A6J1LTB1_DROHY (Endonuclease III homolog n=1 Tax=Drosophila hydei TaxID=7224 RepID=A0A6J1LTB1_DROHY)

HSP 1 Score: 53.9 bits (128), Expect = 9.050e-5
Identity = 33/113 (29.20%), Postives = 62/113 (54.87%), Query Frame = 3 
Query:  366 KMADPDADFETRRFHLFVGVLLSSRCRYEVVRTAVAKLRRREGGLTMEAVSSWSADEAAALVSTVHYNKAKGQNLVESAQAIRSRHSGCVPRQEMELRALPGIGAALAKLFVA 704
            K AD  A+ +T+RFH+ VG++LSS+ + E    A+ +L+ +   LT   +      E   L+  V + K K + L ++++ +  +++  +P    EL  LPG+G  +A + +A
Sbjct:  157 KCADASANEKTQRFHILVGLMLSSQTKDETTFEAMKRLKAQT--LTPARIKDLPVAELERLLHPVSFYKNKAKYLKQTSEILVDQYNEDIPNNIKELLKLPGVGPKMAHICMA 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15769.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B4KE71_DROMO3.710e-529.20Endonuclease III homolog n=4 Tax=mojavensis specie... [more]
A0A6J1LTB1_DROHY9.050e-529.20Endonuclease III homolog n=1 Tax=Drosophila hydei ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15769contigP-wetherbeei_contig15769:234..1578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJW7
Preferred nameNTH1
PFAMsEndIII_4Fe-2S,HhH-GPD
Model size776
Max annot lvl2759|Eukaryota
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.41e-20
EggNOG OGsCOG0177@1|root,KOG1921@2759|Eukaryota
EC4.2.99.18
Descriptionoxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
Cds size744
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.7603123-UTR-P-wetherbeei_contig15769:233..2481683186066.7603123-UTR-P-wetherbeei_contig15769:233..248Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15769 234..248 -
1683186066.7969158-UTR-P-wetherbeei_contig15769:1561..15781683186066.7969158-UTR-P-wetherbeei_contig15769:1561..1578Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15769 1562..1578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.76882-CDS-P-wetherbeei_contig15769:248..3901683186066.76882-CDS-P-wetherbeei_contig15769:248..390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15769 249..390 -
1683186066.7774055-CDS-P-wetherbeei_contig15769:672..8381683186066.7774055-CDS-P-wetherbeei_contig15769:672..838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15769 673..838 -
1683186066.7868202-CDS-P-wetherbeei_contig15769:1125..15611683186066.7868202-CDS-P-wetherbeei_contig15769:1125..1561Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15769 1126..1561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15769.1.1prot_P-wetherbeei_contig15769.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15769 249..1561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15769.1.1

>prot_P-wetherbeei_contig15769.1.1 ID=prot_P-wetherbeei_contig15769.1.1|Name=mRNA_P-wetherbeei_contig15769.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MSVGEGASSSARQGSQSESEEKGEGAWREGGSNATASLQEDSNASSAHEA
TETIDLDGATYVDDCKETRQESNANSTLPREGNGGDSGASSGGAALLRSV
GEPGGVVLCNLASKWLKMADPDADFETRRFHLFVGVLLSSRCRYEVVRTA
VAKLRRREGGLTMEAVSSWSADEAAALVSTVHYNKAKGQNLVESAQAIRS
RHSGCVPRQEMELRALPGIGAALAKLFVAVDGYATKYYGRAQGWSKN*
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mRNA from alignment at P-wetherbeei_contig15769:234..1578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15769.1.1 ID=mRNA_P-wetherbeei_contig15769.1.1|Name=mRNA_P-wetherbeei_contig15769.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1345bp|location=Sequence derived from alignment at P-wetherbeei_contig15769:234..1578- (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAGTTCGGCTGAAATGAGCGTTGGTGAAGGCGCCAGTAGCTCTGCG
CGCCAAGGTAGCCAGAGCGAAAGCGAGGAGAAGGGCGAAGGGGCGTGGAG
AGAAGGAGGTTCAAACGCGACTGCATCACTCCAAGAGGACAGCAATGCGA
GCAGCGCTCACGAGGCAACAGAAACCATCGATCTCGACGGCGCCACCTAT
GTCGATGATTGTAAGGAAACGAGGCAGGAGAGCAATGCCAATAGCACATT
ACCAAGGGAAGGCAACGGCGGCGACAGCGGCGCAAGCAGCGGCGGCGCCG
CGCTACTACGGTCTGTAGGAGAGCCCGGCGGAGTGGTGCTCTGCAATCTG
GCGTCCAAATGGCTCAAGATGGCAGACCCGGACGCCGACTTTGAGACACG
GCGATTCCATCTCTTCGTCGGCGTTCTCTTGTCGAGCCGATGCCGCTATG
AAGGTACGTTGGTAGTAAATGGCTCGACGTGGCGACGCTTAGGGAGTAGT
GGGCTTCATAGCTTGACTCCAGCCATGTTTTTTGACTGCACGTCCTGTTG
CGGTGGCGGTACCTCGACCGCTGCAACGGCAGCAACGGCTTAATAGCGCA
GCAAGTCTGCTCAGCTTGTTTTTAAAAGCGCTCACCCGTCTGCGATCCCT
CACCGCGTTCATCGCTTCGTTTGCTTTGTCCGTCTCCGGACGAATGACAA
CCGTCCGACGACTATACGACCCTGTCCCACACACGCACAGTGGTCCGCAC
GGCGGTGGCCAAGCTGCGGCGGCGCGAGGGGGGGCTGACGATGGAGGCGG
TCAGCAGCTGGTCGGCGGACGAGGCGGCGGCGCTCGTCAGCACGGTGCAC
TACAACAAGGCCAAGGGCCAGAACCTCGTGGAGAGCGCCCAGGCCATCCG
CAGCAGGTGTCCGCGCTACGTGATGGAATTTCGTTTTGCATCTGTGGACG
GTTTTGCGTTTATTCTCTAGATATTGGGCAATCAGGTTTGGTTTGGATGG
GTATGTGTGTGTAGCAATGCCTCAGGAGCCCGGAGTTCACTTAAGAGTGG
TTCGCATGCGGTGATAGACACCTAGGTAGAAAAGGCATTCGGCAGTAAAT
ATGCACATCTATCTTCCCCCCCTCCCCATTGCCGCGCGTCGGCCTGCTTG
CCCACCCTGCGCCGCCGCCCGCTCCGGTATATCCCCAGGCACAGCGGCTG
CGTGCCGCGGCAGGAGATGGAGCTGCGGGCGCTGCCGGGGATCGGCGCCG
CCCTGGCGAAGCTCTTCGTTGCCGTGGATGGCTACGCCACAAAGTACTAC
GGTAGGGCGCAGGGGTGGTCCAAGAACTGACTGAGGGACCTCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15769:234..1578-

>mRNA_P-wetherbeei_contig15769.1.1 ID=mRNA_P-wetherbeei_contig15769.1.1|Name=mRNA_P-wetherbeei_contig15769.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig15769:234..1578- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGTTGGTGAAGGCGCCAGTAGCTCTGCGCGCCAAGGTAGCCAGAG
CGAAAGCGAGGAGAAGGGCGAAGGGGCGTGGAGAGAAGGAGGTTCAAACG
CGACTGCATCACTCCAAGAGGACAGCAATGCGAGCAGCGCTCACGAGGCA
ACAGAAACCATCGATCTCGACGGCGCCACCTATGTCGATGATTGTAAGGA
AACGAGGCAGGAGAGCAATGCCAATAGCACATTACCAAGGGAAGGCAACG
GCGGCGACAGCGGCGCAAGCAGCGGCGGCGCCGCGCTACTACGGTCTGTA
GGAGAGCCCGGCGGAGTGGTGCTCTGCAATCTGGCGTCCAAATGGCTCAA
GATGGCAGACCCGGACGCCGACTTTGAGACACGGCGATTCCATCTCTTCG
TCGGCGTTCTCTTGTCGAGCCGATGCCGCTATGAAGTGGTCCGCACGGCG
GTGGCCAAGCTGCGGCGGCGCGAGGGGGGGCTGACGATGGAGGCGGTCAG
CAGCTGGTCGGCGGACGAGGCGGCGGCGCTCGTCAGCACGGTGCACTACA
ACAAGGCCAAGGGCCAGAACCTCGTGGAGAGCGCCCAGGCCATCCGCAGC
AGGCACAGCGGCTGCGTGCCGCGGCAGGAGATGGAGCTGCGGGCGCTGCC
GGGGATCGGCGCCGCCCTGGCGAAGCTCTTCGTTGCCGTGGATGGCTACG
CCACAAAGTACTACGGTAGGGCGCAGGGGTGGTCCAAGAACTGA
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