mRNA_P-wetherbeei_contig15763.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15763.1.1
Unique NamemRNA_P-wetherbeei_contig15763.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15763.1.1 vs. uniprot
Match: A9SCB2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SCB2_PHYPA)

HSP 1 Score: 49.3 bits (116), Expect = 3.120e-5
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:  124 WPR-VLATIKPVVHYGFVPLVIWLGMQTDPRPAWSDLI 234
            WP  +L   K V HYGF+PL+I++GM TDP+P  S L+
Sbjct:   16 WPTWILKKAKTVTHYGFIPLIIFIGMNTDPKPQLSQLL 53
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BLAST of mRNA_P-wetherbeei_contig15763.1.1 vs. uniprot
Match: A0A7S3UHY9_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UHY9_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 6.070e-5
Identity = 18/39 (46.15%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:  118 PLWPRVLATIKPVVHYGFVPLVIWLGMQTDPRPAWSDLI 234
            P W  ++   KP  HYGF+P +I +GM T+P+P WS L+
Sbjct:   61 PTW--IVGKAKPAFHYGFIPFIIVVGMNTEPKPTWSQLL 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15763.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A9SCB2_PHYPA3.120e-552.63Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A7S3UHY9_9CHLO6.070e-546.15Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15763contigP-wetherbeei_contig15763:971..1457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S65_108V6.1
PFAMsTom7
Model size487
Max annot lvl35493|Streptophyta
KEGG koko:K17771
KEGG TC3.A.8.1
KEGG Pathwayko04137,map04137
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons1
Evalue1.28e-07
EggNOG OGs2E18G@1|root,2S8KG@2759|Eukaryota,37X44@33090|Viridiplantae,3GKZ4@35493|Streptophyta
Ec32 ortholog descriptionMitochondrial import receptor subunit TOM7
Ec32 orthologEc-22_001240.1
DescriptionMitochondrial import receptor subunit
Cds size177
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.7055407-UTR-P-wetherbeei_contig15763:970..10421683186066.7055407-UTR-P-wetherbeei_contig15763:970..1042Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15763 971..1042 +
1683186066.7290952-UTR-P-wetherbeei_contig15763:1219..14571683186066.7290952-UTR-P-wetherbeei_contig15763:1219..1457Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15763 1220..1457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.718779-CDS-P-wetherbeei_contig15763:1042..12191683186066.718779-CDS-P-wetherbeei_contig15763:1042..1219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15763 1043..1219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15763.1.1prot_P-wetherbeei_contig15763.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15763 1043..1219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15763.1.1

>prot_P-wetherbeei_contig15763.1.1 ID=prot_P-wetherbeei_contig15763.1.1|Name=mRNA_P-wetherbeei_contig15763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
MEKKKARRSRPRRGPPLWPRVLATIKPVVHYGFVPLVIWLGMQTDPRPAW
SDLIPFLR*
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mRNA from alignment at P-wetherbeei_contig15763:971..1457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15763.1.1 ID=mRNA_P-wetherbeei_contig15763.1.1|Name=mRNA_P-wetherbeei_contig15763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=487bp|location=Sequence derived from alignment at P-wetherbeei_contig15763:971..1457+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCGCGCAGTCTGCGGAGTAACTATTCTGGACGTACAAACTATCTTAAA
CTTTACGCTTGACCGCACTCCCATGGAGAAAAAGAAGGCGCGACGATCGC
GGCCGCGGCGCGGGCCGCCGCTCTGGCCGCGCGTCCTAGCGACGATCAAG
CCCGTGGTTCATTACGGCTTCGTCCCTCTCGTGATCTGGCTCGGGATGCA
GACCGACCCGCGGCCAGCGTGGAGTGATCTGATCCCGTTCCTAAGATGAG
TGAGGAGCGCGGGCTGTGCCCTCGCAGAGCGAGGTGTGTGGCGGGAGCTG
CTTCGGCAAAAGGAGAGCCAAGAGATTCAAAACCGTGGGACAACGTGAAT
TGTGGGCATATACCACAGCCAGGGAAGGGGTTTCCCTGCCTCGGTGGTAC
ATGGCGTTCGCCCTGTAAATCCCTTAAGATCCATAAATCATAACTCTTTC
CATCAAAGAAAACTCTTCACACAGCGGCGCCAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15763:971..1457+

>mRNA_P-wetherbeei_contig15763.1.1 ID=mRNA_P-wetherbeei_contig15763.1.1|Name=mRNA_P-wetherbeei_contig15763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig15763:971..1457+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAAAAAGAAGGCGCGACGATCGCGGCCGCGGCGCGGGCCGCCGCT
CTGGCCGCGCGTCCTAGCGACGATCAAGCCCGTGGTTCATTACGGCTTCG
TCCCTCTCGTGATCTGGCTCGGGATGCAGACCGACCCGCGGCCAGCGTGG
AGTGATCTGATCCCGTTCCTAAGATGA
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