mRNA_P-wetherbeei_contig15760.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15760.1.1
Unique NamemRNA_P-wetherbeei_contig15760.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: A0A3D0I936_9DELT (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I936_9DELT)

HSP 1 Score: 137 bits (345), Expect = 1.590e-38
Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = 1
Query:   25 VERVLDSEAVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHV----DLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSW 420
            +ER+LD+  VARLA +     P ++PIVFARVG  L+SPIDGKPKS   LAR+ H+   PRV +++D Y  DWR+LWWIR+  +A V    D   HP+   A A L +KYPQY TTPLF   PTLI   +  +RSW
Sbjct:   13 LERLLDTWPVARLATLGPDRTPHIVPIVFARVGPHLWSPIDGKPKSERALARVTHLRDAPRVSVLLDHYEDDWRRLWWIRVDGSACVVMPGDPEHHPEAGPATARLRSKYPQYATTPLFRGIPTLIRVRITGIRSW 148          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: A0A1Z9UK56_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UK56_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 1.630e-38
Identity = 72/148 (48.65%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    1 MTSLAPALVERVLDSEAVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSWAAAGPEGI 444
            M  L+  ++ ++LD   VARL ++D  G PE MPIVFARV   LFSPIDGKPKS A+LAR++ IE  P+  L++D Y  +W QLWW+++   A V   +H  WD AV+ L AKYPQY +  LF D PT+I      VR WA+   +GI
Sbjct:    1 MAVLSEEILYQLLDIMPVARLGLLDGVGLPEAMPIVFARVSDGLFSPIDGKPKSSAKLARIKLIENQPKGTLLLDHYHDNWEQLWWVKMDIEATVISMEHNLWDQAVSGLRAKYPQYHSVSLFKDNPTMIGVRWTRVRWWASNELKGI 148          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: UPI001421A9C8 (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Mycobacterium sp. DL592 TaxID=2675524 RepID=UPI001421A9C8)

HSP 1 Score: 109 bits (272), Expect = 8.210e-28
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   43 SEAVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSWAA 426
            S  VARLA +   G P V+PIVFA  G ++++ +DGKPKS  RL RL +I A+P V +++D Y  DW QLWW+R    A + +   P++D  V  L AKYPQY++  L  D P L    V+TV+ W +
Sbjct:    7 SAPVARLATVTPEGRPHVVPIVFAVDGDVIYTAVDGKPKSTQRLRRLANIAANPSVSVLVDHYGDDWSQLWWVRADGVASI-VADGPEFDRGVRLLRAKYPQYESVSL--DGPAL----VVTVQKWTS 127          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: A0A4Z0N732_9MYCO (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Mycolicibacterium sp. CH28 TaxID=2512237 RepID=A0A4Z0N732_9MYCO)

HSP 1 Score: 108 bits (269), Expect = 2.540e-27
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   49 AVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQH-PQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSWAA 426
            AVA LA +   G P ++PIVFA    ++++ +DGKPKS  RL RL +IEA+P+V +++D YA DW QLWW+R   TA +   QH  ++D A A L AKYPQYQT  L  D P +     + V+ W++
Sbjct:   12 AVATLATVAPGGHPHLVPIVFAVADAVIYTAVDGKPKSTQRLRRLANIEANPQVSVLVDHYADDWSQLWWVRADGTASIH--QHGAEYDRAHALLRAKYPQYQTVSL--DGPVI----AVAVQKWSS 130          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: H0K4A7_9PSEU (Pyridoxamine 5'-phosphate oxidase n=2 Tax=Saccharomonospora azurea TaxID=40988 RepID=H0K4A7_9PSEU)

HSP 1 Score: 107 bits (267), Expect = 7.970e-27
Identity = 59/135 (43.70%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   31 RVLDSEAVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSWAAAGP 435
            R+  +  VARLA  D  G P V+P+ FA  G  +   +D KPK+   L RLR+I A P V L++D YA DW  LWW+R  A  H  +G      AAVAAL+AKYPQY TTP       ++   + T R W+A  P
Sbjct:   10 RLFTAARVARLATADADGVPHVVPVTFAVDGDDVVWAVDAKPKTTTALRRLRNIAARPTVSLLVDHYAEDWSTLWWVR--ADGHATIGDPATDAAAVAALVAKYPQYGTTP---PSGPVVRVRIRTWRGWSATDP 139          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: A0A2G3PS34_9NOCA (TIGR03668 family PPOX class F420-dependent oxidoreductase n=2 Tax=Corynebacteriales TaxID=85007 RepID=A0A2G3PS34_9NOCA)

HSP 1 Score: 106 bits (264), Expect = 1.530e-26
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 1
Query:   28 ERVLDSEAVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSWAA 426
            +++  S  VARLA +     P V+P+VFA  G L+++ +DGKPKS   L RL  I   P V LV+D Y  DW +LWW+R   TA +     P+ D A   L AKYPQYQT  L  D P +     LTVR W++
Sbjct:    7 KQLFASAPVARLATVSADHRPHVVPVVFAAAGDLIYTAVDGKPKSGKPLRRLADIAECPEVSLVVDHYEDDWSRLWWVRAEGTARIH-DDGPEVDVAFRLLRAKYPQYQTVSL--DGPVI----ALTVRRWSS 132          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: UPI001CD93516 (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Wangella sp. NEAU-J3 TaxID=2878561 RepID=UPI001CD93516)

HSP 1 Score: 105 bits (261), Expect = 3.650e-26
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   52 VARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSW 420
            VARLA +DD+G P ++PIVFA VG ++ + +D KPK H RL RL +I   PRV ++ D Y  DW  LWW+R    A V          AVAAL A+YPQY+ TP        +  EVL   +W
Sbjct:   12 VARLATVDDTGAPHLVPIVFALVGDVIHTAVDAKPKRHRRLRRLANIAHEPRVSVLADHYDEDWSALWWVRADGVARV----RESAPEAVAALAARYPQYRGTP---PPGPFVAIEVLRWSAW 127          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: UPI001C736C2C (TIGR03668 family PPOX class F420-dependent oxidoreductase n=2 Tax=Oscillochloris sp. ZM17-4 TaxID=2866714 RepID=UPI001C736C2C)

HSP 1 Score: 105 bits (261), Expect = 5.260e-26
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   28 ERVLDSEAVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHA--RLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSWAAA 429
            + VL +  VARLA +DD G P V+PIVF   G LL++P+ GKPK  A  RL R+++I A+ +V +V+D Y  DW+QL W+++   A V +     +DA +A L  KYPQY   PL    P LI  +V  +RSW  A
Sbjct:    6 QEVLQAARVARLATVDDQGQPHVVPIVFVYDGNLLYTPLGGKPKRVALDRLQRVKNIAANDQVAVVVDHYDEDWQQLSWVQLRGRAAVIMAGE-DYDAGLALLQRKYPQYTAMPL-AGRP-LIVVQVARLRSWRTA 138          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: UPI001FA9CD30 (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Mycolicibacterium litorale TaxID=758802 RepID=UPI001FA9CD30)

HSP 1 Score: 104 bits (260), Expect = 6.130e-26
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   52 VARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPL 366
            VARLA +   G P V+PIVFA  G ++++ +DGKPKS  R+ RL +IEA+PRV +++D YA +W QLWW+R   TA V     PQ +   A L AKYPQYQ   L
Sbjct:   10 VARLATVTPDGRPHVVPIVFAVDGDVVYTAVDGKPKSSMRVRRLANIEANPRVSILVDHYADNWSQLWWVRADGTAAV-WSNGPQCERGRALLRAKYPQYQDVSL 113          
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Match: W9GCN4_9MICO (F420-dependent protein n=2 Tax=Intrasporangium TaxID=53357 RepID=W9GCN4_9MICO)

HSP 1 Score: 104 bits (259), Expect = 8.670e-26
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   52 VARLAVIDDSGGPEVMPIVFARVGKLLFSPIDGKPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQHPQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSW 420
            VARLA +   G P V+PIVFA VG  +++ +DGKPK+  RL RLR+IEAHP V L++D Y  DW +LWW+R+   A V        +  + AL+ KY +YQ  P       L+  E  + RSW
Sbjct:   14 VARLATVRPDGRPHVVPIVFALVGNDVWTAVDGKPKTTRRLQRLRNIEAHPEVSLLVDHYERDWSRLWWVRLDGRATVRQLDDDDAEPGLRALVGKYERYQREP---PPGPLVWIEAHSWRSW 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15760.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D0I936_9DELT1.590e-3851.47TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A1Z9UK56_9GAMM1.630e-3848.65Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
UPI001421A9C88.210e-2844.53TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A4Z0N732_9MYCO2.540e-2745.67TIGR03668 family PPOX class F420-dependent oxidore... [more]
H0K4A7_9PSEU7.970e-2743.70Pyridoxamine 5'-phosphate oxidase n=2 Tax=Saccharo... [more]
A0A2G3PS34_9NOCA1.530e-2643.61TIGR03668 family PPOX class F420-dependent oxidore... [more]
UPI001CD935163.650e-2644.72TIGR03668 family PPOX class F420-dependent oxidore... [more]
UPI001C736C2C5.260e-2644.12TIGR03668 family PPOX class F420-dependent oxidore... [more]
UPI001FA9CD306.130e-2650.48TIGR03668 family PPOX class F420-dependent oxidore... [more]
W9GCN4_9MICO8.670e-2643.90F420-dependent protein n=2 Tax=Intrasporangium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15760contigP-wetherbeei_contig15760:725..1192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1114959.SZMC14600_09483
PFAMsPutative_PNPOx
Model size468
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-27
EggNOG OGsCOG3467@1|root,COG3467@2|Bacteria,2IQIK@201174|Actinobacteria,4E5TC@85010|Pseudonocardiales
DescriptionPFAM Pyridoxamine 5'-phosphate
Cds size468
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.5914202-CDS-P-wetherbeei_contig15760:724..11921683186066.5914202-CDS-P-wetherbeei_contig15760:724..1192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15760 725..1192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15760.1.1prot_P-wetherbeei_contig15760.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15760 725..1192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15760.1.1

>prot_P-wetherbeei_contig15760.1.1 ID=prot_P-wetherbeei_contig15760.1.1|Name=mRNA_P-wetherbeei_contig15760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MTSLAPALVERVLDSEAVARLAVIDDSGGPEVMPIVFARVGKLLFSPIDG
KPKSHARLARLRHIEAHPRVGLVIDRYAADWRQLWWIRIAATAHVDLGQH
PQWDAAVAALLAKYPQYQTTPLFLDEPTLICFEVLTVRSWAAAGPEGIAD
SLANA*
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mRNA from alignment at P-wetherbeei_contig15760:725..1192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15760.1.1 ID=mRNA_P-wetherbeei_contig15760.1.1|Name=mRNA_P-wetherbeei_contig15760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig15760:725..1192+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAGCTTGGCGCCGGCCCTGGTCGAACGGGTACTGGACAGCGAAGC AGTCGCGCGACTTGCGGTGATCGACGACAGTGGTGGGCCGGAGGTCATGC CGATAGTGTTCGCGCGGGTCGGCAAACTGCTGTTCTCGCCCATCGACGGC AAGCCCAAGAGTCACGCGCGTCTGGCGCGTCTGCGCCATATCGAAGCCCA TCCACGGGTCGGCCTGGTCATCGATCGCTATGCCGCCGATTGGCGCCAAT TGTGGTGGATACGGATAGCCGCCACCGCGCATGTCGACCTTGGCCAACAT CCGCAGTGGGACGCGGCGGTGGCTGCATTACTGGCCAAGTATCCGCAATA TCAAACCACGCCGCTGTTTCTCGACGAACCGACCCTGATCTGTTTCGAAG TCTTGACCGTGCGCAGTTGGGCGGCGGCGGGACCGGAAGGCATTGCCGAC AGTCTGGCCAATGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15760:725..1192+

>mRNA_P-wetherbeei_contig15760.1.1 ID=mRNA_P-wetherbeei_contig15760.1.1|Name=mRNA_P-wetherbeei_contig15760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig15760:725..1192+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAGCTTGGCGCCGGCCCTGGTCGAACGGGTACTGGACAGCGAAGC
AGTCGCGCGACTTGCGGTGATCGACGACAGTGGTGGGCCGGAGGTCATGC
CGATAGTGTTCGCGCGGGTCGGCAAACTGCTGTTCTCGCCCATCGACGGC
AAGCCCAAGAGTCACGCGCGTCTGGCGCGTCTGCGCCATATCGAAGCCCA
TCCACGGGTCGGCCTGGTCATCGATCGCTATGCCGCCGATTGGCGCCAAT
TGTGGTGGATACGGATAGCCGCCACCGCGCATGTCGACCTTGGCCAACAT
CCGCAGTGGGACGCGGCGGTGGCTGCATTACTGGCCAAGTATCCGCAATA
TCAAACCACGCCGCTGTTTCTCGACGAACCGACCCTGATCTGTTTCGAAG
TCTTGACCGTGCGCAGTTGGGCGGCGGCGGGACCGGAAGGCATTGCCGAC
AGTCTGGCCAATGCGTGA
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