mRNA_P-wetherbeei_contig15759.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: A0A127F255_9HYPH (LysR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F255_9HYPH) HSP 1 Score: 271 bits (692), Expect = 9.220e-88 Identity = 143/240 (59.58%), Postives = 175/240 (72.92%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRNSANLP 726
MTNIPT+LLRTL+AVVDLRSFTKAAQSLGVTQPAVSAQIKRLQG+LG+DLLDKSAPGV+LTS+G LVVNYARRLLSINDQILD+A + +T+R+GATGD TA A++ G+ + +PDL++ + D LL+ LREGE DL +W S T P+L TR++WTE +VWVR+ + + V L SYGE LF R I A+ A R E F S+ LG V AG V LPR+ A+LP
Sbjct: 1 MTNIPTDLLRTLIAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGMLGADLLDKSAPGVSLTSSGELVVNYARRLLSINDQILDIASPKIETKTIRVGATGDITAAAVAAGIGAVRASQPDLQFHLYVAGADDLLRDLREGETDLAIWASSTGPSLDTRYFWTEPMVWVRAPSMEIESNRPVPLASYGEDHLFGRIGINALSQANRGYERVFTSLSLVALGNVVAAGAAVMALPRSRASLP 240
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: A0A6N7GTL5_9HYPH (LysR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GTL5_9HYPH) HSP 1 Score: 242 bits (618), Expect = 1.890e-76 Identity = 129/237 (54.43%), Postives = 165/237 (69.62%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRNSA 717
M NIPT+LLRTL+AV+DLRSFTKAAQ LGVTQPAVSAQIKRLQ L+G +LLDKSAPGV+LT G VV ARR+L+IND+IL L+ + A QT+R+G GD++ I L+ +R PD+ ++V S D +L+ L++G+LD+V+ V+ T P RH W + VWVRS AT + +G V LVSYGE C R A+AA+ AGR C+ F S+ L AAV AGFGV +PR A
Sbjct: 3 MQNIPTDLLRTLIAVIDLRSFTKAAQMLGVTQPAVSAQIKRLQSLIGYELLDKSAPGVSLTQRGLTVVAQARRMLAINDEILQLSNGQSAMQTLRVGIPGDYSGSRIPATLARFRLRWPDVGFTVTSGTSDSMLRALKQGDLDVVMAVTDTPPVTKPRHLWMRQAVWVRSDATRINPDGPVPLVSYGEDCACQRVAVAALSQAGRRCDYVFTSVSVTSLAAAVGAGFGVLVMPRGRA 239
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: A0A6L5FNR8_9HYPH (LysR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FNR8_9HYPH) HSP 1 Score: 238 bits (606), Expect = 1.720e-74 Identity = 127/235 (54.04%), Postives = 162/235 (68.94%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRN 711
M NIPT+LLRTLV VVD RSFTKAAQ LGVTQPAVSAQIKRLQG+LG+DL D+SA G+ LT G L+VNYARRLLSIND IL +A +AQT+R+G DF G + L+ R PDLR++V L+P L LR+G+LD+ V +S P RH+W E +VW+R AT + V LVS+ E C++ R+A+ A+ +GR+ EL F+G +I L AAV AG G+ LPR+
Sbjct: 9 MNNIPTDLLRTLVTVVDQRSFTKAAQVLGVTQPAVSAQIKRLQGVLGNDLFDRSASGLNLTPKGELIVNYARRLLSINDLILHVAEPNPSAQTIRVGVPSDFLGGNLPAILAGFRKRWPDLRFNVQHGALEPQLHELRQGQLDIAVGLSSADPNPEARHHWVESMVWLRGRATRLDPVAPVPLVSFREDCIYYRTAVTALNQSGRDSELVFIGPTIVSLAAAVGAGLGIMALPRS 243
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: A0A537V3A0_9PROT (LysR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V3A0_9PROT) HSP 1 Score: 236 bits (602), Expect = 8.280e-74 Identity = 129/236 (54.66%), Postives = 161/236 (68.22%), Query Frame = 1
Query: 4 GMTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRN 711
GM NIPTELLRTLV VVD RSFTKAAQSLGVTQPAVSAQIKRLQ LLG +LLDKSAPGV+LT G +VV +ARR+LSINDQI L G + AQTV + GDF I L+ R P +R++ + L+GLR+G++DL V +S + P++ +H W ++ VWVRS AT + G V LVS+GE C +A+ A+ GREC+ F SIA L AAV+AG G+ LPR+
Sbjct: 18 GMVNIPTELLRTLVFVVDQRSFTKAAQSLGVTQPAVSAQIKRLQFLLGYELLDKSAPGVSLTPRGEMVVTHARRMLSINDQIAQLGGGQPTAQTVCVAMPGDFAGTRIPATLARFRKRWPGIRFAASVTSFENTLRGLRQGDIDLAVAISSSKPSIEAQHLWIDQAVWVRSDATQLDPVGPVPLVSFGEDCSCRYTAVNALHRIGRECDFVFTSRSIASLEAAVLAGLGIMVLPRS 253
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: A0A1W6ZM52_9HYPH (HTH lysR-type domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZM52_9HYPH) HSP 1 Score: 230 bits (586), Expect = 9.800e-72 Identity = 128/237 (54.01%), Postives = 168/237 (70.89%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRNSA 717
M NIPTELLRTLVAVVD RSFTKAAQSLGVTQPAVSAQIKRLQ LL S+L DKSAPGV+LT +G LVVN+ARR+LSINDQI++++ + +AQ+VRIG +GDF A + L+ R P LR+SV +H D + + LR+G+LDL++ +S RH W E +VWVR+ + + + V LV++GE C + R A+ A+ A R E+ FVG+S A + AAV +G GV+ +P A
Sbjct: 1 MINIPTELLRTLVAVVDFRSFTKAAQSLGVTQPAVSAQIKRLQILLESELFDKSAPGVSLTPSGRLVVNFARRMLSINDQIVEISVPKLSAQSVRIGVSGDFAAPLLPPLLAEFKQRYPALRFSVRGEHFDIMSRDLRQGDLDLLIGLSEGDVMTDARHQWAEPMVWVRNPSLQLDHDSPVPLVTFGEICAYHRLALRALNRAERPYEIVFVGASEASIFAAVSSGLGVSVMPSRLA 237
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: UPI0010BEDED4 (LysR substrate-binding domain-containing protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BEDED4) HSP 1 Score: 213 bits (542), Expect = 4.830e-65 Identity = 118/237 (49.79%), Postives = 156/237 (65.82%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRNSA 717
MTNIPT+LLRT VAVVD RSFTKAA SLGVTQPAVSAQIKRLQ +LG ++ D++ PGV+LT G +V+NYARRLLSINDQI+ L G R+ +RIG + DFT + L+ R P +R++V + + +PL++ LR+GE+D+ V +S P W LVWVR + + V LVSYGE ++ R+A++A+ AG E E + G +A L AV AG GV P+ R A
Sbjct: 1 MTNIPTDLLRTFVAVVDNRSFTKAANSLGVTQPAVSAQIKRLQSMLGDEIFDRTVPGVSLTPHGEVVINYARRLLSINDQIVHLGGSRRPELVIRIGTSSDFTVTLLPDILASFRARYPAVRFNVSAGYSEPLMRQLRDGEIDVFVGLSNGEPR-DAHQVWPAPLVWVRGADVRLEPGETVPLVSYGEPSVYHRAAVSALRAAGLEWEEVYTGPIMASLSGAVAAGLGVMPITRRRA 236
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: J6UI94_9RHOB (Transcriptional regulatory protein n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J6UI94_9RHOB) HSP 1 Score: 210 bits (535), Expect = 6.160e-64 Identity = 124/237 (52.32%), Postives = 152/237 (64.14%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRNSA 717
MTNIPTELLRTL+ VVDLRSFTKAAQ LGVTQPAVSAQIKRLQ LLG DLLDKSAPGV+LT G VVN ARRLL+INDQI+ LA + +T+R G GDF + + L+ R PD+R + + LL L +G+LD+VV ++ P H W EELVWVR + + + +VS GE CLF R +AA+ AGR ++ F + L AV AG G+T L R A
Sbjct: 1 MTNIPTELLRTLLTVVDLRSFTKAAQKLGVTQPAVSAQIKRLQFLLGFDLLDKSAPGVSLTEKGGTVVNQARRLLAINDQIVALARTARGGRTMRFGLPGDFVGLPLWQSLATFRARWPDVRLHMKTGCSSMLLHELEQGDLDVVVGMTAPHPHDMACHNWREELVWVRGPMAPLDPKQPLPIVSRGESCLFHRHMVAALEGAGRPFDIVFTAGHLDELSRAVAAGLGMTALTRTLA 237
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: A0A833GFE6_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GFE6_9HYPH) HSP 1 Score: 210 bits (535), Expect = 1.230e-63 Identity = 125/236 (52.97%), Postives = 154/236 (65.25%), Query Frame = 1
Query: 4 GMTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRN 711
M NIPTELLRTLV VVDLRSFTKAAQ+LGVTQPAVSAQIKRL LL +D+LDKSAPGV LT G VV++ARRLLSIND IL L +QT+R+G GDF + L+ +R P++R+ V S H + L+ LR+GELDL V +S + ++H W EE VWV + V LVS+GE C + A+AA+ GR E+ +V SS A L AAV AG GV L R+
Sbjct: 30 AMVNIPTELLRTLVTVVDLRSFTKAAQALGVTQPAVSAQIKRLHHLLDADILDKSAPGVLLTPIGERVVDHARRLLSINDSILGLTMPGPPSQTIRVGVPGDFILPFLPWTLAQFRLRWPEVRFQVRSGHREMFLRELRQGELDLCVGMSVES-VHDSQHEWREEAVWVHNPVYPYDPNAPVGLVSFGEHCAMHQLAVAALEEIGRAYEVVYVNSSTASLAAAVNAGLGVMILIRS 264
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: UPI0017DB5D71 (LysR family transcriptional regulator n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017DB5D71) HSP 1 Score: 206 bits (525), Expect = 1.760e-62 Identity = 121/238 (50.84%), Postives = 152/238 (63.87%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRNSAN 720
MTNIPTELLRTL+ VVDLRSFTKAAQ LGVTQPAVSAQIKRLQ LLG DLLDKSAPGV+LT G VV+ ARRLL+INDQI+ LA ++ +R G GDF + + L+ R PD+R + + LL L G++D+VV ++ P H+W E+LVWVR + + LVS GE C+F R +AA+ AGR E+ F+ + L AV AG G+T L R A+
Sbjct: 1 MTNIPTELLRTLLTVVDLRSFTKAAQKLGVTQPAVSAQIKRLQFLLGFDLLDKSAPGVSLTEKGGCVVSQARRLLAINDQIVSLARGNGRSRLLRFGLPGDFVGLPLWQSLAAFRARWPDVRLHMKTCCSSTLLHELEMGDIDVVVAMTSPQPHEMASHHWREDLVWVRGPMAPINPTQPLPLVSRGENCMFHRHMVAALEAAGRSFEIVFMAGHVDELSRAVAAGLGLTALTRTLAD 238
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Match: A0A371B8F8_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B8F8_9HYPH) HSP 1 Score: 203 bits (516), Expect = 3.980e-61 Identity = 118/237 (49.79%), Postives = 151/237 (63.71%), Query Frame = 1
Query: 7 MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLLDKSAPGVTLTSAGHLVVNYARRLLSINDQILDLAGQRQAAQTVRIGATGDFTAGAISRGLSCMHVRRPDLRYSVCSDHLDPLLKGLREGELDLVVWVSPTAPTLSTRHYWTEELVWVRSSATHVPREGVVSLVSYGEQCLFTRSAIAAIGNAGRECELSFVGSSIAGLGAAVVAGFGVTPLPRNSA 717
MTNIPT+LLRT VAVVD RSFTKAA SLGVTQPAVSAQIKRLQ LLG D+ D++ GV+LTS G +VV+YARRLLSINDQI+ L G R+ +RIG + D+T + L+ R P +R+ + + +PL++ LR+GE+DL V +S P W LVWVR + V L+S GE ++ R+A +A+ AG E FVG +A L AV AG GV P+ R A
Sbjct: 1 MTNIPTDLLRTFVAVVDNRSFTKAANSLGVTQPAVSAQIKRLQSLLGDDIFDRTVQGVSLTSHGEIVVSYARRLLSINDQIVHLGGGRRPELVIRIGTSSDYTLMLLPDILATFRARFPAVRFHISAGFTEPLMRQLRDGEIDLFVGLSTGEPR-DAHEVWAAPLVWVRGPNIRLDPGDPVPLISSGEPSVYHRAAASALRAAGLGWEEVFVGPVMASLSGAVAAGLGVMPITRRRA 236 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15759.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15759.1.1 >prot_P-wetherbeei_contig15759.1.1 ID=prot_P-wetherbeei_contig15759.1.1|Name=mRNA_P-wetherbeei_contig15759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp MTNIPTELLRTLVAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGLLGSDLback to top mRNA from alignment at P-wetherbeei_contig15759:3..728- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15759.1.1 ID=mRNA_P-wetherbeei_contig15759.1.1|Name=mRNA_P-wetherbeei_contig15759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig15759:3..728- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15759:3..728- >mRNA_P-wetherbeei_contig15759.1.1 ID=mRNA_P-wetherbeei_contig15759.1.1|Name=mRNA_P-wetherbeei_contig15759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig15759:3..728- (Phaeothamnion wetherbeei SAG_119_79)back to top |