mRNA_P-wetherbeei_contig15718.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15718.2.1
Unique NamemRNA_P-wetherbeei_contig15718.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig15718.2.1 vs. uniprot
Match: A0A6N6T6R4_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T6R4_9HYPH)

HSP 1 Score: 50.1 bits (118), Expect = 2.070e-5
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   34 LAVAIAAPAVHAQDKRSEPATGAPGVITQGSGNVSIGGQAAARKGDTDDRGSAL 195
            L++A+   A  A     E   G PGVIT+GS N SIGGQAAARKGD  D GSA+
Sbjct:    9 LSLALLCAATVAGAVAQEVKDGTPGVITEGSKNTSIGGQAAARKGDRTDGGSAI 62
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15718.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6N6T6R4_9HYPH2.070e-555.56Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15718contigP-wetherbeei_contig15718:994..1344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size351
Hectar predicted targeting categorysignal peptide
Exons1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186065.1382415-CDS-P-wetherbeei_contig15718:993..13441683186065.1382415-CDS-P-wetherbeei_contig15718:993..1344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15718 994..1344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15718.2.1prot_P-wetherbeei_contig15718.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15718 994..1344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15718.2.1

>prot_P-wetherbeei_contig15718.2.1 ID=prot_P-wetherbeei_contig15718.2.1|Name=mRNA_P-wetherbeei_contig15718.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MLTKRLWPALALAVAIAAPAVHAQDKRSEPATGAPGVITQGSGNVSIGGQ
AAARKGDTDDRGSALVEGSSNVTINGRPAVTLGDRTGCGGVTVGGSSNVF
INGKPVARAGDLTTGC*
back to top

mRNA from alignment at P-wetherbeei_contig15718:994..1344-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15718.2.1 ID=mRNA_P-wetherbeei_contig15718.2.1|Name=mRNA_P-wetherbeei_contig15718.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig15718:994..1344- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCACGAAAAGATTGTGGCCCGCTCTGGCCTTGGCGGTTGCGATCGC
GGCGCCGGCCGTCCATGCGCAGGACAAGCGCAGCGAGCCCGCAACCGGCG
CACCGGGCGTCATCACCCAGGGGAGCGGCAATGTCAGCATTGGCGGTCAA
GCTGCCGCGCGCAAGGGCGATACCGACGATCGGGGCAGTGCCCTCGTCGA
GGGATCTTCCAATGTGACGATCAATGGCCGGCCGGCGGTTACCCTCGGCG
ACCGCACGGGATGCGGCGGCGTCACGGTCGGCGGCTCGTCGAACGTCTTC
ATCAACGGCAAGCCCGTGGCGCGTGCCGGCGACTTGACGACGGGATGCTG
A
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15718:994..1344-

>mRNA_P-wetherbeei_contig15718.2.1 ID=mRNA_P-wetherbeei_contig15718.2.1|Name=mRNA_P-wetherbeei_contig15718.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig15718:994..1344- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCACGAAAAGATTGTGGCCCGCTCTGGCCTTGGCGGTTGCGATCGC
GGCGCCGGCCGTCCATGCGCAGGACAAGCGCAGCGAGCCCGCAACCGGCG
CACCGGGCGTCATCACCCAGGGGAGCGGCAATGTCAGCATTGGCGGTCAA
GCTGCCGCGCGCAAGGGCGATACCGACGATCGGGGCAGTGCCCTCGTCGA
GGGATCTTCCAATGTGACGATCAATGGCCGGCCGGCGGTTACCCTCGGCG
ACCGCACGGGATGCGGCGGCGTCACGGTCGGCGGCTCGTCGAACGTCTTC
ATCAACGGCAAGCCCGTGGCGCGTGCCGGCGACTTGACGACGGGATGCTG
A
back to top