mRNA_P-wetherbeei_contig15715.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15715.1.1
Unique NamemRNA_P-wetherbeei_contig15715.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A539DUD3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DUD3_9ACTN)

HSP 1 Score: 113 bits (283), Expect = 5.280e-29
Identity = 60/99 (60.61%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDDLGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M  ++ +E IKLRTVRMN VL I+AVAFPLI++VLT +L D+ D+ +R++V LV  +S+++ +LLGVIGAV IA EF  GTIRPTFAATP+R RV  AK
Sbjct:    1 MINVLRSELIKLRTVRMNAVLAIVAVAFPLIITVLTATLSDLHDVNSRNLVGLVAGTSVITGMLLGVIGAVGIASEFAFGTIRPTFAATPRRSRVIVAK 99          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A7K1B5G5_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B5G5_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 8.220e-25
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDDLGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M   + +EWIK RTV MN VL  I    P ++++LT  LID DD+  +D+++L V SS+++A+LLGVI    +AGEFG GTIRPTFAATP+R RV  AK
Sbjct:    1 MIDTLRSEWIKFRTVPMNVVLLGIGAGLPFLITLLTTLLIDADDMDGQDVLELAVGSSLITAMLLGVIAVAGVAGEFGFGTIRPTFAATPRRMRVVGAK 99          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A6I3F4L1_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F4L1_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 1.180e-24
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDD----LGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M  ++ AEWIKLRTVRMNWVLG IA+ FPL+V++LT      D     L  +D+V  +  +++V +LL GVI A +I  EFG GTIRPTFAATP+R RV  AK
Sbjct:    1 MINLLRAEWIKLRTVRMNWVLGNIAIVFPLVVTLLTAYFRGDDTGFNGLNTQDLVSTLTGTTVVCSLLCGVIAAAAITSEFGFGTIRPTFAATPRRLRVLVAK 103          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A6N2DLX5_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DLX5_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 4.280e-24
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDD-LGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M   +++EWIKLRTVR++ V+ IIAVAFPL++  L  SL  +    G R+ V+LV   S+V+ALLLG + A+S+ GE+ HGTIRPTFAATP   RVF AK
Sbjct:    1 MIATVHSEWIKLRTVRVHLVMLIIAVAFPLLIIALVTSLSSLGSGFGDRNFVELVTGVSVVAALLLGTVSAISLTGEYSHGTIRPTFAATPSHVRVFVAK 100          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A7W0KXQ5_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXQ5_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 7.360e-24
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = 1
Query:   13 INAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDDLGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            + +EWIKLRTV +NWVL I A+AFP ++S LT +L D + +   ++ +LV  +SIV+A+LLGV+ A+ +  EF H TIRPTFAATPKR+R   AK
Sbjct:    5 VRSEWIKLRTVMVNWVLVICAIAFPTVISTLTAALSD-ELVSDGELAELVAGTSIVTAMLLGVVAAIGVTNEFTHNTIRPTFAATPKRFRPLAAK 98          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A6I3C539_9ACTN (ABC transporter permease subunit n=2 Tax=root TaxID=1 RepID=A0A6I3C539_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 9.100e-23
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLI-DVDDLGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M  ++ +EWIKLRT+R+ +VL IIA  FPL++ VL  +LI DV+D    D+V ++  S ++SALLLGV+  +SI  E+G+GTIR +FAATP R +V  AK
Sbjct:    1 MMDLLRSEWIKLRTIRVTYVLTIIAAVFPLLIVVLVAALIGDVNDFSGSDLVTMITQSMVLSALLLGVVSTLSITNEYGNGTIRISFAATPNRRKVLVAK 100          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A7W1HHG2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1HHG2_9ACTN)

HSP 1 Score: 93.2 bits (230), Expect = 3.730e-21
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDDLG--ARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M   I +EWIK+ TV   WVL I+  AFPL+VS+LT +  D  D+G    D+  LV  +++VSAL+ GV+  + I  EF H TIRPTFAA P RWR   AK
Sbjct:    1 MIDAIRSEWIKVTTVTSTWVLAIVGAAFPLVVSLLTAAFDDDADIGFTGSDLGGLVAGTTLVSALIFGVVAILGITSEFSHLTIRPTFAALPDRWRALVAK 101          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A6I3WNI2_9ACTN (ABC transporter permease subunit n=2 Tax=root TaxID=1 RepID=A0A6I3WNI2_9ACTN)

HSP 1 Score: 92.4 bits (228), Expect = 7.510e-21
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDDLG-ARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M  ++ +EWIKL TVR+N+VLGII  AFPLIV VL  +L    +L    D+V +V+++ ++SA+L GVIGA+++  E+ HGTIR TFAA P+R  +   K
Sbjct:    1 MIDLVRSEWIKLHTVRVNYVLGIIGAAFPLIVVVLVAALSGEPELRFGNDLVRIVIDTMVISAILFGVIGALNLTSEYSHGTIRTTFAAVPQRATLLLVK 100          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: UPI000E3533DD (ABC transporter permease n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E3533DD)

HSP 1 Score: 84.7 bits (208), Expect = 7.240e-18
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   13 INAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDDLGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            + +EWIKL T+ +  VL I+AVAFP+IV  L  +L D D + ++D++DL+   +++SA+L+GV+ A+ +  EF HGTIRPTFAA P+R +   AK
Sbjct:    5 LRSEWIKLSTLTVVKVLAIVAVAFPVIVVALVSALSD-DIVTSKDLIDLINVVAVLSAMLVGVVAAIGMTNEFNHGTIRPTFAAQPRRLQPLLAK 98          
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Match: A0A2D6KYX8_9ACTN (Uncharacterized protein n=7 Tax=Actinobacteria TaxID=201174 RepID=A0A2D6KYX8_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 2.750e-17
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLI-DVDDLGARDIVDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK 297
            M  II +EW+K RTVR +WVL IIA+ FPLI+S L   L  D   +  R++V +V +S   S LLL  +  +++  EF HGTIR T+AA P RW+V  +K
Sbjct:    1 MKAIIASEWLKARTVRSHWVLIIIAMMFPLIISTLVGILNPDPQYVSYREVVSIVASSGAFSLLLLSSLWVINLTSEFTHGTIRVTYAAVPARWKVIVSK 100          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15715.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A539DUD3_9ACTN5.280e-2960.61Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1B5G5_9ACTN8.220e-2553.54Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I3F4L1_9ACTN1.180e-2454.37Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6N2DLX5_9ACTN4.280e-2455.00Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A7W0KXQ5_9ACTN7.360e-2453.68ABC transporter permease n=1 Tax=Acidimicrobiia ba... [more]
A0A6I3C539_9ACTN9.100e-2351.00ABC transporter permease subunit n=2 Tax=root TaxI... [more]
A0A7W1HHG2_9ACTN3.730e-2149.50Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A6I3WNI2_9ACTN7.510e-2149.00ABC transporter permease subunit n=2 Tax=root TaxI... [more]
UPI000E3533DD7.240e-1847.37ABC transporter permease n=1 Tax=Desertimonas flav... [more]
A0A2D6KYX8_9ACTN2.750e-1747.00Uncharacterized protein n=7 Tax=Actinobacteria Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15715contigP-wetherbeei_contig15715:4..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_04630
PFAMsABC2_membrane_2,ABC2_membrane_4
Model size297
Max annot lvl201174|Actinobacteria
KEGG koko:K01992
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.63e-15
EggNOG OGsCOG1277@1|root,COG1277@2|Bacteria,2GJ2R@201174|Actinobacteria
Descriptiontransmembrane transport
Cds size297
COG categoryCP
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186065.0762725-CDS-P-wetherbeei_contig15715:3..3001683186065.0762725-CDS-P-wetherbeei_contig15715:3..300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15715 4..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15715.1.1prot_P-wetherbeei_contig15715.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15715 4..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15715.1.1

>prot_P-wetherbeei_contig15715.1.1 ID=prot_P-wetherbeei_contig15715.1.1|Name=mRNA_P-wetherbeei_contig15715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MTPIINAEWIKLRTVRMNWVLGIIAVAFPLIVSVLTCSLIDVDDLGARDI
VDLVVNSSIVSALLLGVIGAVSIAGEFGHGTIRPTFAATPKRWRVFTAK
back to top

mRNA from alignment at P-wetherbeei_contig15715:4..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15715.1.1 ID=mRNA_P-wetherbeei_contig15715.1.1|Name=mRNA_P-wetherbeei_contig15715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig15715:4..300- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCCGATCATCAACGCAGAGTGGATCAAGCTGCGCACGGTCCGCAT GAACTGGGTGCTCGGCATCATCGCCGTGGCCTTCCCGCTGATCGTGTCGG TGCTCACGTGCTCGTTGATCGACGTCGACGACCTCGGCGCTCGCGACATC GTCGATCTCGTCGTCAACTCTTCGATCGTGTCGGCGCTGCTGCTGGGTGT CATCGGCGCAGTGTCGATCGCCGGCGAGTTCGGCCACGGCACCATCCGAC CGACGTTCGCCGCAACGCCGAAGCGGTGGCGCGTGTTCACCGCGAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15715:4..300-

>mRNA_P-wetherbeei_contig15715.1.1 ID=mRNA_P-wetherbeei_contig15715.1.1|Name=mRNA_P-wetherbeei_contig15715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig15715:4..300- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCCGATCATCAACGCAGAGTGGATCAAGCTGCGCACGGTCCGCAT
GAACTGGGTGCTCGGCATCATCGCCGTGGCCTTCCCGCTGATCGTGTCGG
TGCTCACGTGCTCGTTGATCGACGTCGACGACCTCGGCGCTCGCGACATC
GTCGATCTCGTCGTCAACTCTTCGATCGTGTCGGCGCTGCTGCTGGGTGT
CATCGGCGCAGTGTCGATCGCCGGCGAGTTCGGCCACGGCACCATCCGAC
CGACGTTCGCCGCAACGCCGAAGCGGTGGCGCGTGTTCACCGCGAAG
back to top