mRNA_P-wetherbeei_contig15675.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15675.1.1
Unique NamemRNA_P-wetherbeei_contig15675.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15675.1.1 vs. uniprot
Match: D8LAY5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 7.980e-37
Identity = 140/385 (36.36%), Postives = 178/385 (46.23%), Query Frame = 1 
Query:   16 PSVLPGLRPVCEAGMRAVFCRLDAAGAGAVDAGRLVVVLRADRGVDGLMTRAIGRQRWLAALDKMDSRLRSPAAAMTGNNGSNRGERGSSSGG------SRHAAGRDITWGEFLLFFVPTVACAVSADDYASFAGV-----AGSG---------------------------GALLPDDVAMLQMVLPSGWGEYGDDXXXXXXXXXXXXXXXXXSSKPLFPPLSALSYEQLQREVRRLARERSFLMQRWRDDGDDAATRAAAVHELYRRELAALRGSEAAVRERLAAAAAERDXXXXXXXXXXXXXXXXXXXXXEARESEXXXXXXXXXXXXXXXXXXXXXXRADEACW-RERLGKLEAEHALLRRAHGKAVVTQRALERELARL 1053
            P +L GLRP CEA MRA+FCR+D  G GAV A RL+ VLR+D GV  +M  A+G+ RW AALD M++ L  P A     NG                  +R ++ RD+TWGEFLLFF+P    A +ADD A  AG+      GSG                           GA+  D  AMLQMV+P+ W   G                           L+ALS  QL+REV RLA+ER+FL+   R+DG     RA AVH+ YR E+ ALR  +  + ERL    A R                      +  E E                       +  A   RER+ +LEAEH+L  R +GK+ V QRALERELAR+
Sbjct: 1031 PPLLEGLRPECEAVMRALFCRVDRLGTGAVRARRLLDVLRSDCGVSEVMEAAVGKSRWRAALDSMEATLCHPVADSCTTNGDGXXXXXXXXXXXXXXXXTRCSSERDVTWGEFLLFFLPP---AGNADD-AYNAGLISRFPGGSGCRGGFPDEHASVRDAGXXXXXXXXXXFGAVSEDAAAMLQMVVPTHWTAGGGQGGAG---------------------LAALSVGQLRREVLRLAKERAFLLALVREDGRLGKRRAEAVHDQYRHEMRALRSKKGEL-ERLVQEEASRTEEEQDRGRVVEQEVCSLREELKKAEQEWKERVDAAVQEKESALSESSREASQSATKARERISRLEAEHSLALRENGKSSVRQRALERELARI 1389
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BLAST of mRNA_P-wetherbeei_contig15675.1.1 vs. uniprot
Match: A0A6H5JPG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.320e-22
Identity = 117/343 (34.11%), Postives = 161/343 (46.94%), Query Frame = 1 
Query:   91 GAGAVDAGRLVVVLRADRGVDGLMTRAIGRQRWLAALDKMDSRLRSPA--AAMTGNNGSNRGERGSSS--GGS--RHAAGRDITWGEFLLFFVPTVACAVSADDYASFAGVAGSGGAL--LPDDVAMLQMVLPSG---WGEYGDDXXXXXXXXXXXXXXXXXSSKPLFPPLSALSYEQLQREVRRLARERSFLMQRWRDDGDDAATRAAAVHELYRRELAALRGSEAAVRERLAAAAAERDXXXXXXXXXXXXXXXXXXXXXEAR---------ESEXXXXXXXXXXXXXXXXXXXXXXRADEACW--RERLGKLEAEHALLRRAHGKAVVTQRALERELARL 1053
            G GAV A R + VLR+D GV  +M  A+G+ RW AALD M++ L  P   + +T  +G +   R +++  GGS  R +A RD+TWGEFLLFF+P    A  A +    + + G  G     PDD A ++     G   +G   +D                          +A    QL+REV RLA+ER+FL+   R+DG     RA AVH+ YR EL AL   +  +   L   A+  + XXXXXX              +A          ES                        A ++    RER+ +LEAEH+L  R +GK+ V QRALERELAR+
Sbjct:    6 GTGAVRARRFLDVLRSDCGVSEVMEAAVGKSRWRAALDSMEATLCHPVVESCITNGDGGSAVHRATTTTAGGSSTRCSAERDVTWGEFLLFFLPPAGDADDAYNAGLISRLPGGRGCRGGFPDDHASVRDAAGGGRRPFGAVSED--------------------------AAAIVGQLRREVLRLAKERAFLLALVREDGRLGKRRAEAVHDQYRHELRALHSKKGELERLLREEASRTEEXXXXXXVVQQEACSLREELKKAEQEWKENGKSESAELSLVSVSAVQEKESALSEASREASQSATKARERISRLEAEHSLALRENGKSSVRQRALERELARI 322
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BLAST of mRNA_P-wetherbeei_contig15675.1.1 vs. uniprot
Match: A0A835YNX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.440e-6
Identity = 56/170 (32.94%), Postives = 67/170 (39.41%), Query Frame = 1 
Query:  310 GRDITWGEFLLFFVP----------------TVACAVSADDYASFAGVAGSG--GALLPDDVAMLQMVLPSGW-------------GEYGDDXXXXXXXXXXXXXXXXXSSKPLFPPLSALSYEQLQREVRRLARERSFLMQRWRDDGDDAATRAAAVHELYRRELAALR 726
            G D+TWGEFLL F+P                      S     S A  A     G  L  D+  LQ+ LP  W             G  G                   S++     L ALS  +L+REVRRL  ER+FLM++ RDDG   A R   VH  YR EL  LR
Sbjct:  638 GVDVTWGEFLLCFIPGGGTGAGETADSLPTRRARARTSTSSTTSIATQAAPAQHGDPLAGDLFQLQLQLPENWTACRLCRAKAEDTGGSGGGGDGSAVVGAVVRCTHGASAQ-----LDALSVVELRREVRRLTAERTFLMEQIRDDGKQLAARTTTVHTQYRHELKLLR 802
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15675.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LAY5_ECTSI7.980e-3736.36Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JPG8_9PHAE4.320e-2234.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNX3_9STRA5.440e-632.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15675contigP-wetherbeei_contig15675:302..1587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAY5
PFAMsLRR_4,LRR_8,LRR_9
Model size1086
Max annot lvl2759|Eukaryota
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.31e-37
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
Cds size1086
COG categoryL
BRITEko00000,ko01009,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.803265-CDS-P-wetherbeei_contig15675:301..5121683186063.803265-CDS-P-wetherbeei_contig15675:301..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15675 302..512 -
1683186063.815272-CDS-P-wetherbeei_contig15675:712..15871683186063.815272-CDS-P-wetherbeei_contig15675:712..1587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15675 713..1587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15675.1.1prot_P-wetherbeei_contig15675.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15675 302..1587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15675.1.1

>prot_P-wetherbeei_contig15675.1.1 ID=prot_P-wetherbeei_contig15675.1.1|Name=mRNA_P-wetherbeei_contig15675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=362bp
GYGRPPSVLPGLRPVCEAGMRAVFCRLDAAGAGAVDAGRLVVVLRADRGV
DGLMTRAIGRQRWLAALDKMDSRLRSPAAAMTGNNGSNRGERGSSSGGSR
HAAGRDITWGEFLLFFVPTVACAVSADDYASFAGVAGSGGALLPDDVAML
QMVLPSGWGEYGDDDDAAGAGSGESGGGGGGSSKPLFPPLSALSYEQLQR
EVRRLARERSFLMQRWRDDGDDAATRAAAVHELYRRELAALRGSEAAVRE
RLAAAAAERDAAAEEAAAARERSAAAEVAAAEARESEQERARAAETAAEA
SASAAAAAARADEACWRERLGKLEAEHALLRRAHGKAVVTQRALERELAR
LQERAGQEVEEE
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mRNA from alignment at P-wetherbeei_contig15675:302..1587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15675.1.1 ID=mRNA_P-wetherbeei_contig15675.1.1|Name=mRNA_P-wetherbeei_contig15675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1286bp|location=Sequence derived from alignment at P-wetherbeei_contig15675:302..1587- (Phaeothamnion wetherbeei SAG_119_79)
GGCTACGGCCGGCCGCCGTCGGTGCTGCCGGGGCTGCGACCTGTGTGCGA
GGCGGGCATGCGGGCGGTATTCTGCCGCCTCGACGCCGCCGGCGCCGGCG
CCGTCGACGCCGGGCGGCTGGTGGTGGTTCTGCGGGCGGACCGTGGCGTC
GACGGCCTCATGACGCGGGCGATCGGGCGGCAGCGGTGGCTGGCGGCGCT
CGACAAAATGGACTCGCGGCTGCGCTCTCCGGCTGCGGCGATGACAGGCA
ACAATGGCAGCAACCGCGGCGAGCGTGGTAGCAGCAGCGGTGGGAGCCGG
CATGCCGCCGGACGGGACATTACATGGGGAGAGTTCTTGCTGTTCTTCGT
CCCCACCGTGGCTTGCGCTGTCTCTGCCGACGACTATGCGTCCTTCGCCG
GCGTTGCAGGAAGTGGCGGTGCGCTGCTTCCGGACGACGTTGCCATGCTG
CAAATGGTGCTGCCGAGCGGCTGGGGTGAATACGGCGACGACGACGACGC
TGCAGGTGCCGGCAGCGGCGAAAGCGGCGGCGGGGGTGGCGGCAGTAGCA
AGCCGCTGTTCCCGCCGCTCAGCGCGCTGAGCTATGAGCAGCTGCAGCGC
GAGGTGCGGCGCCTCGCTCGGGAGCGTTCCTTTTTGATGCAGCGGTGGCG
GGATGACGGGGACGACGCCGCCACGCGGGCGGCGGCCGTCCACGAGCTCT
ACCGGCGGGAGCTGGCAGCGCTGCGCGGCTCCGAGGCGGCGGTACGAGAG
CGTCTGGCGGCAGCGGCGGCGGAACGGGATGCTGCGGCGGAGGAGGCGGC
GGCGGCGCGGGAGCGGTCAGCGGCGGCCGAAGTGGCGGCAGCAGAAGCGA
GGGAATCCGAACAGGAGCGGGCTCGGTGAGTGGTTCGACGGGTTGGTTGG
GCATTGTTTTTTGTTGCATCCTTGGCGTTTGTATAGGAAGCGTCACTATG
TACTGCAGTGAAACTTTACATGGAAAGACCTTCGGCTGCATCCCCGGTTC
CACCTTTTATCACCAAACTAACTATGTATTTCCCCTTTCCGCGCCGCACC
CCCTTACCCAAACCGAACATCTCAGCGCCGCCGAGACAGCTGCCGAGGCT
TCGGCGTCCGCCGCCGCTGCGGCCGCCCGCGCAGACGAGGCCTGCTGGCG
CGAGCGGCTCGGCAAGCTCGAAGCCGAGCACGCGCTGCTGCGGCGTGCCC
ACGGCAAGGCCGTCGTGACACAGCGGGCGCTCGAGCGCGAGCTGGCGCGG
CTGCAGGAGCGGGCGGGGCAGGAGGTGGAGGAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15675:302..1587-

>mRNA_P-wetherbeei_contig15675.1.1 ID=mRNA_P-wetherbeei_contig15675.1.1|Name=mRNA_P-wetherbeei_contig15675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1086bp|location=Sequence derived from alignment at P-wetherbeei_contig15675:302..1587- (Phaeothamnion wetherbeei SAG_119_79)
GGCTACGGCCGGCCGCCGTCGGTGCTGCCGGGGCTGCGACCTGTGTGCGA
GGCGGGCATGCGGGCGGTATTCTGCCGCCTCGACGCCGCCGGCGCCGGCG
CCGTCGACGCCGGGCGGCTGGTGGTGGTTCTGCGGGCGGACCGTGGCGTC
GACGGCCTCATGACGCGGGCGATCGGGCGGCAGCGGTGGCTGGCGGCGCT
CGACAAAATGGACTCGCGGCTGCGCTCTCCGGCTGCGGCGATGACAGGCA
ACAATGGCAGCAACCGCGGCGAGCGTGGTAGCAGCAGCGGTGGGAGCCGG
CATGCCGCCGGACGGGACATTACATGGGGAGAGTTCTTGCTGTTCTTCGT
CCCCACCGTGGCTTGCGCTGTCTCTGCCGACGACTATGCGTCCTTCGCCG
GCGTTGCAGGAAGTGGCGGTGCGCTGCTTCCGGACGACGTTGCCATGCTG
CAAATGGTGCTGCCGAGCGGCTGGGGTGAATACGGCGACGACGACGACGC
TGCAGGTGCCGGCAGCGGCGAAAGCGGCGGCGGGGGTGGCGGCAGTAGCA
AGCCGCTGTTCCCGCCGCTCAGCGCGCTGAGCTATGAGCAGCTGCAGCGC
GAGGTGCGGCGCCTCGCTCGGGAGCGTTCCTTTTTGATGCAGCGGTGGCG
GGATGACGGGGACGACGCCGCCACGCGGGCGGCGGCCGTCCACGAGCTCT
ACCGGCGGGAGCTGGCAGCGCTGCGCGGCTCCGAGGCGGCGGTACGAGAG
CGTCTGGCGGCAGCGGCGGCGGAACGGGATGCTGCGGCGGAGGAGGCGGC
GGCGGCGCGGGAGCGGTCAGCGGCGGCCGAAGTGGCGGCAGCAGAAGCGA
GGGAATCCGAACAGGAGCGGGCTCGCGCCGCCGAGACAGCTGCCGAGGCT
TCGGCGTCCGCCGCCGCTGCGGCCGCCCGCGCAGACGAGGCCTGCTGGCG
CGAGCGGCTCGGCAAGCTCGAAGCCGAGCACGCGCTGCTGCGGCGTGCCC
ACGGCAAGGCCGTCGTGACACAGCGGGCGCTCGAGCGCGAGCTGGCGCGG
CTGCAGGAGCGGGCGGGGCAGGAGGTGGAGGAGGAG
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