mRNA_P-wetherbeei_contig1567.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1567.3.1
Unique NamemRNA_P-wetherbeei_contig1567.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1567.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1567contigP-wetherbeei_contig1567:3656..5493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1838
Hectar predicted targeting categoryother localisation
Exons1
Cds size1836
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.5927289-CDS-P-wetherbeei_contig1567:3657..54931683186063.5927289-CDS-P-wetherbeei_contig1567:3657..5493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1567 3658..5493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1567.3.1prot_P-wetherbeei_contig1567.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1567 3658..5493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1567.3.1

>prot_P-wetherbeei_contig1567.3.1 ID=prot_P-wetherbeei_contig1567.3.1|Name=mRNA_P-wetherbeei_contig1567.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=612bp
AIVGAAGNEIAVTTFVERVDEKDAQPADPRLAAAFSATCRTGAVSISLGQ
TKRLLKKWAPGLLRRHAHDDLSAAMAAAGAGGADSLTLSILSAVVNDLRR
ARVARAAGGGGGGVRHRYGDMRRQKIRHEYNSLGERCAVVVPLGAIDGYA
RLSDRRAADIAAAAAAANAVTVSDATAAAAAAAVAANAAGAVDRDFVADM
AAKAFDAGSVGEVSSVKCSNDIGSAQPLVSRNLDFPPTFILSAVPSRVDC
RPSIVTAGLLRPPLLPRVPECFKPFWSAEGTAWIGRRWKAGAAAAIATGT
QPMPMVDAVSTIREIMDEFAPRYERAVGQQSSGIGGGSSGESLAEFVYLR
FALRYGLIRAAEERVVALLEAAAVHAAGWSILRLFLRCLGAVPAGGGAPH
VKGEEGGCNIGYGCGTAEAEAAEACQARARADDAIALAMRSRAWMRTRGL
LADIPAQVVDVPAQVVAAGRGGISSSSRTAVAAAAAAGGTTGCPLAVLRR
AEATLGISAAMRGGWSPGHQAMTALRQAVATMPAVTVTAAAAAESLANSV
AMPPDSQGDRSPTAWAEAFSSSLFTAAAHETSAIEAAEALEGEAVGKRAG
GALLGASNDLFQ
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mRNA from alignment at P-wetherbeei_contig1567:3656..5493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1567.3.1 ID=mRNA_P-wetherbeei_contig1567.3.1|Name=mRNA_P-wetherbeei_contig1567.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1838bp|location=Sequence derived from alignment at P-wetherbeei_contig1567:3656..5493- (Phaeothamnion wetherbeei SAG_119_79)
GCCATTGTCGGTGCTGCCGGAAACGAAATCGCCGTGACAACTTTCGTAGA
ACGCGTCGATGAAAAGGACGCGCAGCCGGCAGACCCAAGGCTCGCGGCAG
CCTTTTCCGCTACTTGCCGAACGGGCGCGGTGTCCATCTCGCTGGGACAG
ACCAAGCGCCTTTTAAAAAAGTGGGCGCCGGGGCTCTTGCGCCGCCATGC
TCATGATGACCTCTCTGCGGCCATGGCCGCCGCGGGCGCCGGTGGCGCCG
ATTCGTTGACCCTATCGATCTTATCAGCGGTCGTGAATGACCTGCGTCGG
GCGCGCGTTGCGAGGGCGGCTGGCGGCGGCGGCGGCGGCGTGCGGCACCG
ATACGGCGACATGCGGCGGCAGAAGATCCGCCATGAGTACAATTCCCTTG
GCGAGCGGTGCGCCGTCGTCGTGCCGCTGGGCGCCATTGATGGGTACGCG
CGGCTCAGCGACAGGCGAGCCGCTGATATAGCCGCCGCCGCTGCTGCCGC
CAATGCTGTCACCGTTTCAGACGCAACCGCTGCTGCGGCGGCCGCCGCCG
TTGCCGCCAATGCTGCTGGTGCCGTTGACAGGGACTTTGTCGCAGATATG
GCTGCTAAAGCTTTCGATGCAGGGAGCGTCGGCGAAGTAAGCAGCGTGAA
ATGCAGCAATGACATTGGCAGCGCTCAGCCGCTCGTATCGCGAAACCTTG
ATTTCCCCCCGACCTTCATCCTCTCGGCTGTTCCATCCCGAGTCGATTGC
CGGCCGTCCATTGTCACGGCGGGGCTGTTGCGACCGCCGCTCCTGCCGCG
CGTTCCCGAATGCTTCAAACCATTCTGGAGCGCCGAGGGAACGGCCTGGA
TCGGGCGCCGCTGGAAGGCCGGTGCGGCGGCGGCCATCGCCACTGGGACG
CAACCCATGCCGATGGTCGATGCAGTCTCGACCATCCGCGAAATCATGGA
CGAATTTGCGCCGCGTTATGAACGCGCCGTCGGGCAACAGTCGAGCGGAA
TTGGCGGCGGCAGCAGCGGCGAAAGCCTGGCGGAATTCGTCTATCTCCGC
TTCGCGCTTCGCTACGGCCTGATTCGGGCGGCAGAGGAGCGCGTTGTGGC
ACTGCTTGAGGCGGCCGCGGTGCACGCCGCCGGCTGGTCGATCCTACGGC
TATTTCTGCGCTGCCTAGGCGCAGTGCCAGCGGGAGGGGGCGCACCGCAT
GTGAAAGGCGAAGAAGGAGGATGCAACATCGGGTATGGATGCGGAACTGC
CGAAGCCGAAGCGGCGGAGGCATGCCAGGCACGAGCACGGGCAGACGATG
CTATTGCGCTTGCGATGCGGTCGCGGGCGTGGATGCGCACGCGCGGGTTG
CTCGCCGACATTCCCGCTCAGGTCGTCGACGTTCCTGCTCAGGTCGTAGC
AGCAGGACGCGGCGGAATTTCGTCGTCGTCGAGGACGGCGGTGGCAGCGG
CGGCGGCTGCTGGCGGCACCACCGGCTGCCCGCTGGCCGTGCTGCGGCGG
GCCGAAGCGACGCTGGGCATTTCGGCCGCGATGCGAGGTGGGTGGAGTCC
CGGCCACCAAGCCATGACTGCCCTGCGGCAGGCGGTCGCTACCATGCCGG
CCGTTACGGTCACGGCGGCGGCGGCGGCAGAGTCTCTGGCAAACTCTGTA
GCAATGCCACCAGACAGCCAAGGCGACAGAAGCCCAACGGCATGGGCAGA
AGCCTTTTCTTCGTCCCTCTTCACGGCAGCTGCGCATGAAACATCGGCCA
TAGAAGCGGCGGAAGCGCTGGAAGGAGAGGCGGTTGGAAAACGAGCGGGA
GGAGCCTTGTTAGGAGCTTCTAATGATCTCTTTCAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1567:3656..5493-

>mRNA_P-wetherbeei_contig1567.3.1 ID=mRNA_P-wetherbeei_contig1567.3.1|Name=mRNA_P-wetherbeei_contig1567.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1836bp|location=Sequence derived from alignment at P-wetherbeei_contig1567:3656..5493- (Phaeothamnion wetherbeei SAG_119_79)
GCCATTGTCGGTGCTGCCGGAAACGAAATCGCCGTGACAACTTTCGTAGA
ACGCGTCGATGAAAAGGACGCGCAGCCGGCAGACCCAAGGCTCGCGGCAG
CCTTTTCCGCTACTTGCCGAACGGGCGCGGTGTCCATCTCGCTGGGACAG
ACCAAGCGCCTTTTAAAAAAGTGGGCGCCGGGGCTCTTGCGCCGCCATGC
TCATGATGACCTCTCTGCGGCCATGGCCGCCGCGGGCGCCGGTGGCGCCG
ATTCGTTGACCCTATCGATCTTATCAGCGGTCGTGAATGACCTGCGTCGG
GCGCGCGTTGCGAGGGCGGCTGGCGGCGGCGGCGGCGGCGTGCGGCACCG
ATACGGCGACATGCGGCGGCAGAAGATCCGCCATGAGTACAATTCCCTTG
GCGAGCGGTGCGCCGTCGTCGTGCCGCTGGGCGCCATTGATGGGTACGCG
CGGCTCAGCGACAGGCGAGCCGCTGATATAGCCGCCGCCGCTGCTGCCGC
CAATGCTGTCACCGTTTCAGACGCAACCGCTGCTGCGGCGGCCGCCGCCG
TTGCCGCCAATGCTGCTGGTGCCGTTGACAGGGACTTTGTCGCAGATATG
GCTGCTAAAGCTTTCGATGCAGGGAGCGTCGGCGAAGTAAGCAGCGTGAA
ATGCAGCAATGACATTGGCAGCGCTCAGCCGCTCGTATCGCGAAACCTTG
ATTTCCCCCCGACCTTCATCCTCTCGGCTGTTCCATCCCGAGTCGATTGC
CGGCCGTCCATTGTCACGGCGGGGCTGTTGCGACCGCCGCTCCTGCCGCG
CGTTCCCGAATGCTTCAAACCATTCTGGAGCGCCGAGGGAACGGCCTGGA
TCGGGCGCCGCTGGAAGGCCGGTGCGGCGGCGGCCATCGCCACTGGGACG
CAACCCATGCCGATGGTCGATGCAGTCTCGACCATCCGCGAAATCATGGA
CGAATTTGCGCCGCGTTATGAACGCGCCGTCGGGCAACAGTCGAGCGGAA
TTGGCGGCGGCAGCAGCGGCGAAAGCCTGGCGGAATTCGTCTATCTCCGC
TTCGCGCTTCGCTACGGCCTGATTCGGGCGGCAGAGGAGCGCGTTGTGGC
ACTGCTTGAGGCGGCCGCGGTGCACGCCGCCGGCTGGTCGATCCTACGGC
TATTTCTGCGCTGCCTAGGCGCAGTGCCAGCGGGAGGGGGCGCACCGCAT
GTGAAAGGCGAAGAAGGAGGATGCAACATCGGGTATGGATGCGGAACTGC
CGAAGCCGAAGCGGCGGAGGCATGCCAGGCACGAGCACGGGCAGACGATG
CTATTGCGCTTGCGATGCGGTCGCGGGCGTGGATGCGCACGCGCGGGTTG
CTCGCCGACATTCCCGCTCAGGTCGTCGACGTTCCTGCTCAGGTCGTAGC
AGCAGGACGCGGCGGAATTTCGTCGTCGTCGAGGACGGCGGTGGCAGCGG
CGGCGGCTGCTGGCGGCACCACCGGCTGCCCGCTGGCCGTGCTGCGGCGG
GCCGAAGCGACGCTGGGCATTTCGGCCGCGATGCGAGGTGGGTGGAGTCC
CGGCCACCAAGCCATGACTGCCCTGCGGCAGGCGGTCGCTACCATGCCGG
CCGTTACGGTCACGGCGGCGGCGGCGGCAGAGTCTCTGGCAAACTCTGTA
GCAATGCCACCAGACAGCCAAGGCGACAGAAGCCCAACGGCATGGGCAGA
AGCCTTTTCTTCGTCCCTCTTCACGGCAGCTGCGCATGAAACATCGGCCA
TAGAAGCGGCGGAAGCGCTGGAAGGAGAGGCGGTTGGAAAACGAGCGGGA
GGAGCCTTGTTAGGAGCTTCTAATGATCTCTTTCAG
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