mRNA_P-wetherbeei_contig1567.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1567.1.1
Unique NamemRNA_P-wetherbeei_contig1567.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1567.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1567contigP-wetherbeei_contig1567:48..2544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2202
Hectar predicted targeting categoryother localisation
Exons2
Cds size2202
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.5630343-CDS-P-wetherbeei_contig1567:47..2031683186063.5630343-CDS-P-wetherbeei_contig1567:47..203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1567 48..203 -
1683186063.5706885-CDS-P-wetherbeei_contig1567:498..25441683186063.5706885-CDS-P-wetherbeei_contig1567:498..2544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1567 499..2544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1567.1.1prot_P-wetherbeei_contig1567.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1567 48..2544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1567.1.1

>prot_P-wetherbeei_contig1567.1.1 ID=prot_P-wetherbeei_contig1567.1.1|Name=mRNA_P-wetherbeei_contig1567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=734bp
TRSDGKDRPKLCGYGPSAFQMRPAYGNWGPGTLTVTDAAASCFGHGAAGA
AEAASGAAEGIGRVCCDPSHSRLQFSASESVLDSSAAAHPSAPGASGSYQ
IGRYGDACFRLFDAAAAPLQRSDTAMSERGGSDDEAEYLGWSGDATAAAA
GLWRPGQCRTSLSRQEVTKASAADAAGQHSDGGITRELSFSRSVAALAHG
HNGEDCGGCGGGGGFETQAAAGAEGSKDSKKLRSVLERVQQSARYAGGGS
ATGTVWPAGDGRFGSSSDAATDTGIAIPDGLVLNLDDGVLLPPSRGRFRG
GRSVSDAVNGDAANADETSGEADSGGEESSGGGGRGRGGGSLRSERRMLA
SHYVASPFGKPTTTHQAYRVVLRCATSHRRRPPPPPPPPLPRGSPDTSAI
IANRWRPLHRKGGAASKGGLHSSGSEAGMAATESMLGLYDAAGRPASPLR
AIPGSVQDGGEGVDDGGAGWRKCHSASGVANRHKAGQQLSRAMTSSTQRK
SWRQHPRRNLPEGGETEYDSAGECRRAEADFDLDEAETDEGSGRGRDPPR
TATTADGSPPGSTAGADGGEATAGAAAARSMSTGSGAARAARVASTGPRT
GAGGPKALGSFKAKAAAGAVAATAWNMFRRGPSGAGLESPPTSTAQQKRA
EQRALIESMVAEQEAKKRRGSFEIRRLIEEQQVAAARQQEEAKAAAAAAA
AVVAARMEREREARRLAMAAKSREAEQRAMQLAE
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mRNA from alignment at P-wetherbeei_contig1567:48..2544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1567.1.1 ID=mRNA_P-wetherbeei_contig1567.1.1|Name=mRNA_P-wetherbeei_contig1567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2497bp|location=Sequence derived from alignment at P-wetherbeei_contig1567:48..2544- (Phaeothamnion wetherbeei SAG_119_79)
ACCAGAAGTGACGGTAAGGACAGGCCGAAGCTGTGTGGTTACGGCCCATC
GGCGTTCCAGATGCGGCCTGCTTACGGCAATTGGGGCCCCGGCACGCTGA
CAGTGACGGACGCGGCGGCTTCCTGCTTCGGGCACGGAGCGGCTGGGGCG
GCCGAGGCAGCATCGGGAGCAGCAGAAGGTATTGGCCGTGTCTGCTGCGA
TCCGTCGCACAGCCGCCTGCAATTTTCAGCGTCCGAGTCCGTCCTCGACA
GCTCTGCTGCTGCTCACCCCAGTGCTCCAGGCGCCAGCGGCAGCTACCAA
ATTGGCCGCTACGGCGATGCTTGCTTTCGTCTGTTTGATGCGGCGGCCGC
CCCTCTGCAACGCTCGGACACGGCAATGAGCGAGCGCGGCGGCAGCGACG
ACGAAGCAGAATATTTGGGCTGGTCCGGCGATGCCACGGCGGCGGCGGCG
GGGCTGTGGCGGCCTGGGCAGTGCCGTACTAGCCTCAGCCGCCAAGAGGT
CACCAAGGCCTCCGCGGCGGACGCCGCCGGGCAGCATTCCGACGGCGGCA
TAACAAGAGAGCTCTCTTTCAGTCGTTCTGTTGCCGCTCTGGCCCACGGG
CACAATGGAGAGGACTGCGGCGGCTGCGGTGGTGGCGGCGGTTTTGAAAC
ACAGGCTGCAGCCGGCGCCGAAGGAAGCAAAGACAGCAAGAAGCTCCGCT
CGGTGCTAGAGCGCGTTCAGCAGAGCGCTCGGTACGCTGGTGGTGGCTCA
GCGACAGGGACGGTGTGGCCGGCAGGCGATGGCAGATTCGGCTCCAGTTC
CGACGCCGCCACCGACACCGGCATCGCAATCCCGGATGGACTTGTGTTAA
ATCTGGACGACGGCGTCCTGCTGCCGCCATCTCGCGGCCGTTTCCGCGGC
GGCCGCAGTGTCAGTGACGCCGTCAATGGCGATGCTGCGAATGCTGATGA
AACTTCCGGGGAGGCAGACTCGGGTGGAGAGGAGAGCAGCGGCGGCGGCG
GCCGCGGCCGCGGTGGCGGCAGCCTGCGGTCCGAGCGGCGCATGCTGGCG
AGTCACTACGTGGCGAGCCCCTTCGGCAAGCCGACAACGACTCATCAGGC
GTACCGCGTGGTCCTGCGCTGTGCCACATCACACCGACGCCGGCCGCCGC
CGCCGCCGCCCCCGCCGCTACCGCGCGGCAGCCCGGATACCAGCGCCATC
ATTGCAAACCGCTGGCGGCCGCTGCACCGGAAGGGCGGCGCCGCTTCGAA
GGGCGGCCTTCATAGCTCCGGGTCCGAGGCGGGGATGGCGGCGACGGAGT
CGATGCTCGGACTGTACGACGCCGCCGGCCGCCCGGCCAGCCCACTCCGC
GCAATTCCAGGTAGCGTTCAAGACGGGGGAGAAGGGGTCGACGACGGCGG
CGCCGGCTGGCGTAAATGCCACAGCGCCTCCGGGGTCGCCAACAGGCACA
AGGCCGGCCAGCAGCTGTCGCGTGCCATGACCTCGTCGACCCAGCGAAAG
TCTTGGCGGCAGCACCCGCGGCGGAATTTGCCGGAAGGCGGCGAGACGGA
GTATGACAGCGCAGGAGAGTGCCGCAGGGCTGAAGCCGACTTTGATCTCG
ATGAAGCCGAAACGGACGAAGGCTCAGGACGTGGAAGAGATCCCCCACGG
ACGGCGACGACCGCCGATGGGTCGCCTCCCGGCAGTACGGCCGGCGCTGA
CGGCGGGGAGGCGACCGCCGGCGCAGCAGCCGCGCGAAGCATGAGCACCG
GGAGCGGTGCAGCTCGGGCGGCCCGAGTTGCCAGCACTGGCCCACGAACC
GGAGCGGGCGGCCCCAAGGCATTGGGAAGCTTCAAAGCGAAAGCGGCGGC
CGGGGCGGTGGCTGCGACGGCGTGGAACATGTTCCGGCGCGGACCCTCGG
GAGCTGGACTTGAGTCGCCGCCGACGAGCACGGCGCAGCAAAAGCGGGCG
GAACAGCGGGCGCTGATCGAGTCCATGGTGGCAGAACAAGAGGCCAAGAA
GCGCCGCGGGTCGTTTGAAATTCGCCGGCTCATAGAAGAGCAGCAGGCGA
GAGCTAATCGCTATTTGGCTTCTCGTCTCTGCCTCGCGATGTTGATTGTA
TTTTTGCTCTCCCTTGGCCTCTAAATTTTGCCGACTTTTTTTAATGAAAA
AGGTTACCGGAACTGGGTGGGAGAGTATTTACCCTACCCGACGCCTCTTT
AGGCCCGCCGCTTGTGCACAGAAGTAAATAATAGTCACAACCGCCGACTC
TGCACAGAGGTAAATAATAGTAACAACCGCCGACTCCACTTCTCGCACTT
ATCCTCTCCCGCCTTCCGTTGCATCCGCCCCGTCCTGACAGGTTGCCGCG
GCGCGCCAGCAGGAGGAGGCCAAGGCCGCTGCTGCCGCCGCCGCCGCCGT
GGTCGCCGCGCGCATGGAGCGGGAACGCGAGGCGCGTCGGCTGGCGATGG
CGGCCAAGAGTCGCGAGGCCGAGCAGCGGGCCATGCAGCTCGCCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1567:48..2544-

>mRNA_P-wetherbeei_contig1567.1.1 ID=mRNA_P-wetherbeei_contig1567.1.1|Name=mRNA_P-wetherbeei_contig1567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2202bp|location=Sequence derived from alignment at P-wetherbeei_contig1567:48..2544- (Phaeothamnion wetherbeei SAG_119_79)
ACCAGAAGTGACGGTAAGGACAGGCCGAAGCTGTGTGGTTACGGCCCATC
GGCGTTCCAGATGCGGCCTGCTTACGGCAATTGGGGCCCCGGCACGCTGA
CAGTGACGGACGCGGCGGCTTCCTGCTTCGGGCACGGAGCGGCTGGGGCG
GCCGAGGCAGCATCGGGAGCAGCAGAAGGTATTGGCCGTGTCTGCTGCGA
TCCGTCGCACAGCCGCCTGCAATTTTCAGCGTCCGAGTCCGTCCTCGACA
GCTCTGCTGCTGCTCACCCCAGTGCTCCAGGCGCCAGCGGCAGCTACCAA
ATTGGCCGCTACGGCGATGCTTGCTTTCGTCTGTTTGATGCGGCGGCCGC
CCCTCTGCAACGCTCGGACACGGCAATGAGCGAGCGCGGCGGCAGCGACG
ACGAAGCAGAATATTTGGGCTGGTCCGGCGATGCCACGGCGGCGGCGGCG
GGGCTGTGGCGGCCTGGGCAGTGCCGTACTAGCCTCAGCCGCCAAGAGGT
CACCAAGGCCTCCGCGGCGGACGCCGCCGGGCAGCATTCCGACGGCGGCA
TAACAAGAGAGCTCTCTTTCAGTCGTTCTGTTGCCGCTCTGGCCCACGGG
CACAATGGAGAGGACTGCGGCGGCTGCGGTGGTGGCGGCGGTTTTGAAAC
ACAGGCTGCAGCCGGCGCCGAAGGAAGCAAAGACAGCAAGAAGCTCCGCT
CGGTGCTAGAGCGCGTTCAGCAGAGCGCTCGGTACGCTGGTGGTGGCTCA
GCGACAGGGACGGTGTGGCCGGCAGGCGATGGCAGATTCGGCTCCAGTTC
CGACGCCGCCACCGACACCGGCATCGCAATCCCGGATGGACTTGTGTTAA
ATCTGGACGACGGCGTCCTGCTGCCGCCATCTCGCGGCCGTTTCCGCGGC
GGCCGCAGTGTCAGTGACGCCGTCAATGGCGATGCTGCGAATGCTGATGA
AACTTCCGGGGAGGCAGACTCGGGTGGAGAGGAGAGCAGCGGCGGCGGCG
GCCGCGGCCGCGGTGGCGGCAGCCTGCGGTCCGAGCGGCGCATGCTGGCG
AGTCACTACGTGGCGAGCCCCTTCGGCAAGCCGACAACGACTCATCAGGC
GTACCGCGTGGTCCTGCGCTGTGCCACATCACACCGACGCCGGCCGCCGC
CGCCGCCGCCCCCGCCGCTACCGCGCGGCAGCCCGGATACCAGCGCCATC
ATTGCAAACCGCTGGCGGCCGCTGCACCGGAAGGGCGGCGCCGCTTCGAA
GGGCGGCCTTCATAGCTCCGGGTCCGAGGCGGGGATGGCGGCGACGGAGT
CGATGCTCGGACTGTACGACGCCGCCGGCCGCCCGGCCAGCCCACTCCGC
GCAATTCCAGGTAGCGTTCAAGACGGGGGAGAAGGGGTCGACGACGGCGG
CGCCGGCTGGCGTAAATGCCACAGCGCCTCCGGGGTCGCCAACAGGCACA
AGGCCGGCCAGCAGCTGTCGCGTGCCATGACCTCGTCGACCCAGCGAAAG
TCTTGGCGGCAGCACCCGCGGCGGAATTTGCCGGAAGGCGGCGAGACGGA
GTATGACAGCGCAGGAGAGTGCCGCAGGGCTGAAGCCGACTTTGATCTCG
ATGAAGCCGAAACGGACGAAGGCTCAGGACGTGGAAGAGATCCCCCACGG
ACGGCGACGACCGCCGATGGGTCGCCTCCCGGCAGTACGGCCGGCGCTGA
CGGCGGGGAGGCGACCGCCGGCGCAGCAGCCGCGCGAAGCATGAGCACCG
GGAGCGGTGCAGCTCGGGCGGCCCGAGTTGCCAGCACTGGCCCACGAACC
GGAGCGGGCGGCCCCAAGGCATTGGGAAGCTTCAAAGCGAAAGCGGCGGC
CGGGGCGGTGGCTGCGACGGCGTGGAACATGTTCCGGCGCGGACCCTCGG
GAGCTGGACTTGAGTCGCCGCCGACGAGCACGGCGCAGCAAAAGCGGGCG
GAACAGCGGGCGCTGATCGAGTCCATGGTGGCAGAACAAGAGGCCAAGAA
GCGCCGCGGGTCGTTTGAAATTCGCCGGCTCATAGAAGAGCAGCAGGTTG
CCGCGGCGCGCCAGCAGGAGGAGGCCAAGGCCGCTGCTGCCGCCGCCGCC
GCCGTGGTCGCCGCGCGCATGGAGCGGGAACGCGAGGCGCGTCGGCTGGC
GATGGCGGCCAAGAGTCGCGAGGCCGAGCAGCGGGCCATGCAGCTCGCCG
AG
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