mRNA_P-wetherbeei_contig15661.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15661.1.1
Unique NamemRNA_P-wetherbeei_contig15661.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: A0A6B2LEU8_9EUKA (NAGPA domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEU8_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 8.490e-24
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRNFGFVQLLSGRGWIVRRGRAYAGESRDLD--PGAEFFLEEAPRTALGVFPNGSIIL 387
            C +ATNG FF        TGSYC+GN+ISD  + QL    +   R       A IG+ +GG ++TGF+  +TV    F QL++G GWIVR G ++   S+DL   PG  F LE+APRT+LGVF NGS+ L
Sbjct:   54 CDYATNGAFFTWSND---TGSYCLGNLISDGEVWQLPKDGSGMNR-------ANIGLTKGGAVVTGFIDFSTVAKLPFAQLITGWGWIVRNGASFVKSSQDLTFKPGG-FALEKAPRTSLGVFLNGSLAL 172          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: A0A7S3GR75_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR75_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.190e-23
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRNFGFVQLLSGRGWIVRRGRAYAGESRDL----DPGAEFFLEEAPRTALGVFPNGSIIL 387
            C++ATNG FF  D  +  TGSYC+GN++SD  + Q       + R       A IG+   G ++TGF++ +TV N  F QL++G GW+VR G++Y   S+DL    DP   F  E+APRTA+GVF NG+I+L
Sbjct:  101 CEYATNGAFFTWDLTK--TGSYCLGNLVSDGNVWQKPTDGTGTGR-------ANIGIKSDGTIITGFLSQSTVNNTEFTQLITGYGWLVRNGQSYVKSSQDLSGFDDPNG-FVNEKAPRTAVGVFQNGTIVL 222          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: F2U6X2_SALR5 (NAGPA domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6X2_SALR5)

HSP 1 Score: 90.1 bits (222), Expect = 3.270e-19
Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRNFGFVQLLSGRGWIVRRGRAYAGESRDLDPGAEFFLEEAPRTALGVFPNGSII 384
            C +ATNGGFF    P       C GN+I D + +QL A           T     G+      + GFV    +  F F QLLSG GW+VR+G++Y  +SRD+ P + F  E+APRTA+GV  +G++I
Sbjct:  103 CVYATNGGFFAFTPPA------CEGNIIIDSKTIQLPA-----------TGNCVFGLTENKRTVVGFVDGPDIAKFRFTQLLSGSGWLVRKGKSYVNKSRDISPTSGFVTEKAPRTAVGVRADGTLI 212          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: A0A5A8CTG8_CAFRO (NAGPA domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CTG8_CAFRO)

HSP 1 Score: 87.0 bits (214), Expect = 5.680e-18
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRG-GGLLTGFVTVATVRNFGFVQLLSGRGWIVRRGRAYAGESRDLDPGAEFFLEEAPRTALGVFPNGSIIL 387
            C  ATNG FF M   +    ++C+GNV S+   VQL  GD A+            G++R  G +L GF +   +R+     +L GRGW+VR G+ +  +S DL+  + F  E+APRTA+GVFPNG+  L
Sbjct:  108 CTVATNGAFFDMHTGKL---NHCIGNVASNGSQVQLPGGDGAN-----------FGIVRSKGSVLVGFASAKALRDEPVSDVLQGRGWLVRNGQDWVRKSPDLNTSSTFVTEKAPRTAVGVFPNGTAAL 222          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: A0A482SL50_9ARCH (NAGPA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL50_9ARCH)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-16
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 SCKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRNFGFVQLLSGRGWIVRRGRAYAGESRDL--DPGAEFFLEEAPRTALGVFPNGSIILF 390
            +C++ATNG FF  D    TTGS C+GN+ISD ++ QL    + + R       A  GV     ++TGF+    +    F QL++G GW+VR G +    S+DL   PG  F LE+APRT++G +   +I+ +
Sbjct:  106 NCEYATNGAFFTWD--ITTTGSLCLGNLISDGKVWQLPTDGSGTGR-------ANFGVTADNNIITGFIDANVLSTKNFTQLITGWGWLVRNGVSNVNVSQDLTFSPGG-FTLEKAPRTSVGKYGLTNILFY 227          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: NAGPA_MOUSE (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase n=12 Tax=Muridae TaxID=10066 RepID=NAGPA_MOUSE)

HSP 1 Score: 62.8 bits (151), Expect = 6.710e-9
Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRN--FGFVQLLSGRGWIVRRGRAYAGESRDLDPG--------AEFFLEEAPRTALGVFPNGSIILF 390
            C+ A NGGFF M   E      C+GNV+SD R+V    G             A  G+ R G ++TG+++   V +    FVQLLSG  W++R G  Y  ES+ ++          ++F    + RTA+G    G +ILF
Sbjct:  133 CRIAQNGGFFRMSTGE------CLGNVVSDGRLVSSSGG----------LQNAQFGIRRDGTIVTGYLSEEEVLDPVNPFVQLLSGVVWLIRNGNIYINESQAIECDETQETGSFSKFVNVMSARTAVGHDREGQLILF 255          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: UPI001916FEC3 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X1 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=UPI001916FEC3)

HSP 1 Score: 62.0 bits (149), Expect = 1.140e-8
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRNF--GFVQLLSGRGWIVRRGRAYAGESR--------DLDPGAEFFLEEAPRTALGVFPNGSIILF 390
            C+ A NGGFF M   E      C+GNV+SD R+V    G             A  G+ R G L+TG+++   V +    FVQLLSG  W++R G  Y  ES+        +    ++F    + RTA+G    G +ILF
Sbjct:  133 CRVAQNGGFFRMGTGE------CLGNVVSDGRLVSSSGG----------LQNAQFGIRRDGTLVTGYLSEEDVLDTVNPFVQLLSGVVWLIRNGSIYINESQITECDETQETGSFSKFVNVMSARTAVGHDRKGQLILF 255          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: A0A8C9RLA3_SCLFO (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RLA3_SCLFO)

HSP 1 Score: 61.6 bits (148), Expect = 1.730e-8
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRNF--GFVQLLSGRGWIVRRGRAYAGESRDLDPG--------AEFFLEEAPRTALGVFPNGSIILF 390
            C +A NGGFF MD     TG YC+GNV+SD ++VQ   G             A  G+ + G L+ G+++   V +    FVQL+SG  W++R G+ Y  ES + +           +F    + RTA+G    G ++LF
Sbjct:  143 CLYAQNGGFFNMD-----TG-YCLGNVVSDGKLVQSSRG----------IQNAQFGIRKDGSLVFGYLSEDDVLDEVNPFVQLVSGVVWLLRNGKVYVKESMEAECNETQKTGTFGKFVNVVSARTAVGHDREGRLVLF 265          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: UPI001B3AF384 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase n=1 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3AF384)

HSP 1 Score: 61.2 bits (147), Expect = 2.370e-8
Identity = 49/139 (35.25%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATV--RNFGFVQLLSGRGWIVRRGRAYAGES--RDLDPGAE------FFLEEAPRTALGVFPNGSIILF 390
            C FA NGGFF       T    C+GNV+SD R+VQ D+G   +A+          G+ R G L+ G+++   V  ++  FVQL+SG  W++R G  Y  +S   + D   E      F    + RTA+G    G +ILF
Sbjct:  137 CLFAQNGGFF------DTHSGKCIGNVVSDSRMVQ-DSGGVQNAQF---------GIKRDGTLMFGYLSQEDVLDQSNSFVQLVSGVVWLLRNGEVYINQSLKAECDKSQETGLFRTFVDVVSARTAVGHDAEGKLILF 259          
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Match: A0A2K6FCJ6_PROCO (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase n=8 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6FCJ6_PROCO)

HSP 1 Score: 60.8 bits (146), Expect = 3.150e-8
Identity = 47/139 (33.81%), Postives = 66/139 (47.48%), Query Frame = 1
Query:    4 CKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTTTPTAAIGVIRGGGLLTGFVTVATVRNFG--FVQLLSGRGWIVRRGRAYAGESR--------DLDPGAEFFLEEAPRTALGVFPNGSIILF 390
            C  A NGGFF M   E      C+GNV+SD R+V    G             A  G+ R G L+TG+++   V +    FVQLLSG  W++R G  Y  ES+        +    ++F    + RTA+G    G ++LF
Sbjct:  132 CHAAQNGGFFRMSTGE------CLGNVVSDGRLVSSSGG----------LQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSVYINESQATECDETQETGSFSKFVNVVSARTAVGHDRKGQLVLF 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15661.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2LEU8_9EUKA8.490e-2446.15NAGPA domain-containing protein n=1 Tax=Arcella in... [more]
A0A7S3GR75_9STRA2.190e-2343.94Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F2U6X2_SALR53.270e-1939.37NAGPA domain-containing protein n=1 Tax=Salpingoec... [more]
A0A5A8CTG8_CAFRO5.680e-1839.53NAGPA domain-containing protein n=4 Tax=Cafeteria ... [more]
A0A482SL50_9ARCH1.100e-1637.88NAGPA domain-containing protein n=1 Tax=archaeon T... [more]
NAGPA_MOUSE6.710e-933.81N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
UPI001916FEC31.140e-834.53N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
A0A8C9RLA3_SCLFO1.730e-833.81N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
UPI001B3AF3842.370e-835.25N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
A0A2K6FCJ6_PROCO3.150e-833.81N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15661contigP-wetherbeei_contig15661:307..847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004995108.1
PFAMsNAGPA
Model size390
Max annot lvl33154|Opisthokonta
KEGG koko:K01125
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.36e-20
EggNOG OGs2CF2M@1|root,2S3HR@2759|Eukaryota,3A56R@33154|Opisthokonta
EC3.1.4.45
DescriptionPfam:DUF2233
Cds size390
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.5325627-CDS-P-wetherbeei_contig15661:306..6201683186063.5325627-CDS-P-wetherbeei_contig15661:306..620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15661 307..620 -
1683186063.5411708-CDS-P-wetherbeei_contig15661:771..8471683186063.5411708-CDS-P-wetherbeei_contig15661:771..847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15661 772..847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15661.1.1prot_P-wetherbeei_contig15661.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15661 307..847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15661.1.1

>prot_P-wetherbeei_contig15661.1.1 ID=prot_P-wetherbeei_contig15661.1.1|Name=mRNA_P-wetherbeei_contig15661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
SCKFATNGGFFLMDGPEATTGSYCVGNVISDERIVQLDAGDAASARLPTT
TPTAAIGVIRGGGLLTGFVTVATVRNFGFVQLLSGRGWIVRRGRAYAGES
RDLDPGAEFFLEEAPRTALGVFPNGSIILF
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mRNA from alignment at P-wetherbeei_contig15661:307..847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15661.1.1 ID=mRNA_P-wetherbeei_contig15661.1.1|Name=mRNA_P-wetherbeei_contig15661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=541bp|location=Sequence derived from alignment at P-wetherbeei_contig15661:307..847- (Phaeothamnion wetherbeei SAG_119_79)
TCTTGCAAGTTTGCCACGAACGGTGGGTTCTTCTTGATGGACGGGCCGGA AGCAACGACAGGGAGCTATTGCGTCGGTAAGCCGTCGCTCTCTCGCTTCT CTTTGGTGCGTTTTGCCAAAGCTTAAGTCTTGGCTTACCAATGCCGCTTG CTGAGAGCTTTCAGTTTTGCTCCATCTATCTACGTTTAAAGGACTCTGTT GGCCGCTCCATGCTCTCGTCCTCATAGGCAACGTAATCTCGGACGAGAGA ATAGTCCAGTTGGACGCCGGCGACGCAGCATCCGCACGGCTTCCGACGAC GACCCCAACCGCCGCCATCGGCGTCATTCGCGGCGGAGGGTTGCTCACGG GGTTTGTTACGGTGGCCACCGTCCGAAACTTCGGCTTTGTGCAGCTCTTG TCCGGCCGCGGTTGGATTGTGCGGCGAGGCCGTGCGTACGCTGGCGAGAG CCGTGACTTGGATCCCGGGGCGGAGTTCTTCCTGGAAGAGGCTCCACGGA CGGCCCTCGGGGTCTTCCCGAACGGCTCCATTATCCTGTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15661:307..847-

>mRNA_P-wetherbeei_contig15661.1.1 ID=mRNA_P-wetherbeei_contig15661.1.1|Name=mRNA_P-wetherbeei_contig15661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig15661:307..847- (Phaeothamnion wetherbeei SAG_119_79)
TCTTGCAAGTTTGCCACGAACGGTGGGTTCTTCTTGATGGACGGGCCGGA
AGCAACGACAGGGAGCTATTGCGTCGGCAACGTAATCTCGGACGAGAGAA
TAGTCCAGTTGGACGCCGGCGACGCAGCATCCGCACGGCTTCCGACGACG
ACCCCAACCGCCGCCATCGGCGTCATTCGCGGCGGAGGGTTGCTCACGGG
GTTTGTTACGGTGGCCACCGTCCGAAACTTCGGCTTTGTGCAGCTCTTGT
CCGGCCGCGGTTGGATTGTGCGGCGAGGCCGTGCGTACGCTGGCGAGAGC
CGTGACTTGGATCCCGGGGCGGAGTTCTTCCTGGAAGAGGCTCCACGGAC
GGCCCTCGGGGTCTTCCCGAACGGCTCCATTATCCTGTTT
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