mRNA_P-wetherbeei_contig15658.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15658.2.1
Unique NamemRNA_P-wetherbeei_contig15658.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A537RDT3_9PROT ((2Fe-2S)-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RDT3_9PROT)

HSP 1 Score: 197 bits (501), Expect = 9.580e-63
Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMRAG 363
            T+FGCGLEQCGCCMVL+DG PEK C KP+ +VAG  + T+EGLG P+RPHPLQQAF+DEQAGQCGYCL GIL++AK LL+ NPSP+R EIA ALD NICRCGSH RILRAVE+AA ++R G
Sbjct:   36 TKFGCGLEQCGCCMVLVDGNPEKSCGKPLSAVAGTEIMTIEGLGTPERPHPLQQAFLDEQAGQCGYCLPGILITAKGLLDRNPSPSRKEIAEALDDNICRCGSHIRILRAVERAARLLREG 156          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A537V230_9PROT ((2Fe-2S)-binding protein n=4 Tax=Bacteria TaxID=2 RepID=A0A537V230_9PROT)

HSP 1 Score: 196 bits (499), Expect = 1.930e-62
Identity = 92/121 (76.03%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMRAG 363
            T+FGCGLEQCG CMVLI+G P K C K V +VAGK+V T+EGLG P+RPHPLQQAF+DEQAGQCGYCL GIL++AKALL+ NP+P+R EIALALD NICRCGSH+RILRAVE AAA MR G
Sbjct:   36 TKFGCGLEQCGTCMVLIEGEPVKSCGKAVSTVAGKTVLTIEGLGTPERPHPLQQAFLDEQAGQCGYCLPGILVTAKALLDRNPAPSRREIALALDDNICRCGSHHRILRAVETAAAKMREG 156          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A521M0A1_9HYPH ((2Fe-2S)-binding protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521M0A1_9HYPH)

HSP 1 Score: 187 bits (475), Expect = 9.900e-59
Identity = 85/120 (70.83%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMRA 360
            TR+GCGLEQCGCCMVL+D  P   C + + +VAG+ VTT+EGLG   RPHPLQQAF+DEQAGQCGYCLSGIL+SAKALL+ NP P+RAEI  ALD ++CRCG+H RILRAVE+AAA +RA
Sbjct:   35 TRYGCGLEQCGCCMVLVDEQPTYACTRELGTVAGRQVTTIEGLGMEARPHPLQQAFLDEQAGQCGYCLSGILISAKALLDRNPDPSRAEIVAALDKHLCRCGAHQRILRAVERAAATLRA 154          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: UPI00136CE0F8 ((2Fe-2S)-binding protein n=1 Tax=Propylenella binzhouense TaxID=2555902 RepID=UPI00136CE0F8)

HSP 1 Score: 185 bits (469), Expect = 8.100e-58
Identity = 85/121 (70.25%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMRAG 363
            +RFGCGLEQCG CMVLIDG P   C++ + +VAG+SVTT+EGLG     HPLQQAFI+EQAGQCGYCLSGI++SA ALL  NPSPTR E+A ALDG++CRCGSHNRI+RAV+KA  +M AG
Sbjct:   40 SRFGCGLEQCGACMVLIDGEPAYSCSREIGTVAGRSVTTIEGLGREGSLHPLQQAFIEEQAGQCGYCLSGIIISAAALLAANPSPTRQEVAAALDGHLCRCGSHNRIIRAVQKAGRMMAAG 160          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A1H8YC93_9PROT (Nicotinate dehydrogenase subunit A n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8YC93_9PROT)

HSP 1 Score: 184 bits (466), Expect = 1.980e-57
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMRAG 363
            TR+GCGLEQCG CMVL+DG P   C + +  VA + VTT+EGLG P +PHPLQQAF+DEQAGQCGYCLSGI+MSAKALL+ NP+P+R +I  ALD ++CRCG+H RILRAVE+AAA +R G
Sbjct:   35 TRYGCGLEQCGSCMVLVDGQPVYACTREIGMVADRKVTTIEGLGTPAKPHPLQQAFLDEQAGQCGYCLSGIVMSAKALLDRNPTPSRVDIVAALDKHLCRCGAHQRILRAVERAAATLRNG 155          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A6A7M5P1_9PROT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7M5P1_9PROT)

HSP 1 Score: 183 bits (465), Expect = 2.810e-57
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMRAG 363
            TR+GCGLEQCG CMVL+DG P   C + V +VA + VTT+EGLG P +PHPLQQAF+DEQAGQCGYCLSGI+MSAKALL+ NP P+R++I  ALD ++CRCG+H RILRAVE+AA  M +G
Sbjct:   35 TRYGCGLEQCGTCMVLVDGQPAYACTREVGTVADRKVTTIEGLGTPAKPHPLQQAFLDEQAGQCGYCLSGIVMSAKALLDRNPKPSRSDIVAALDRHLCRCGAHQRILRAVERAAQAMSSG 155          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A1X7DL01_9HYPH (Nicotinate dehydrogenase subunit A n=1 Tax=Rhizobium oryzae TaxID=464029 RepID=A0A1X7DL01_9HYPH)

HSP 1 Score: 183 bits (464), Expect = 4.110e-57
Identity = 86/119 (72.27%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMR 357
            +R+GCGLEQCG CMVLIDGA E  C++ V ++AG S+TTVEGLG  +  HPLQQAF+DEQAGQCGYCLSGIL++AKA L+ NP PTRAE+A ALD N+CRCGSH RILRAV +AAAVMR
Sbjct:   37 SRYGCGLEQCGACMVLIDGAAEYSCSREVGTLAGYSITTVEGLGTMEALHPLQQAFLDEQAGQCGYCLSGILIAAKAFLDRNPDPTRAEVAAALDRNLCRCGSHPRILRAVLRAAAVMR 155          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A536X3B8_9PROT ((2Fe-2S)-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536X3B8_9PROT)

HSP 1 Score: 181 bits (459), Expect = 1.720e-56
Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMR 357
            TRFGCG EQCG C VL+DG     C  P+WSV GK+VTTVEGLG+PD PHPLQ+AFIDEQA QCGYC SG+LMSA ALL   P P+ AE+  ALDGN+CRCGSHNRI+RAV +A+AV R
Sbjct:   31 TRFGCGDEQCGACFVLVDGRAVASCTTPLWSVVGKAVTTVEGLGSPDSPHPLQRAFIDEQAAQCGYCTSGMLMSAAALLSRTPRPSEAEVKAALDGNLCRCGSHNRIVRAVLRASAVDR 149          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A8J6PMC7_9HYPH ((2Fe-2S)-binding protein n=1 Tax=Oryzicola mucosus TaxID=2767425 RepID=A0A8J6PMC7_9HYPH)

HSP 1 Score: 181 bits (458), Expect = 3.370e-56
Identity = 83/119 (69.75%), Postives = 102/119 (85.71%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMR 357
            +R+GCGLEQCG CMVLIDG  E  C++ V ++AG+ VTTVEGLG+P+  HPLQ+AF++EQAGQCGYCLSGIL+SAKALL+ NP+PTRA++  ALD N+CRCGSH RILRAV KAAA +R
Sbjct:   37 SRYGCGLEQCGACMVLIDGNAEYSCSREVGTLAGRCVTTVEGLGSPEALHPLQRAFLEEQAGQCGYCLSGILVSAKALLDRNPNPTRADVIAALDANLCRCGSHPRILRAVLKAAATLR 155          
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Match: A0A068T4E9_NEOGA (Isoquinoline 1-oxidoreductase, alpha subunit n=5 Tax=Neorhizobium TaxID=1525371 RepID=A0A068T4E9_NEOGA)

HSP 1 Score: 180 bits (457), Expect = 4.780e-56
Identity = 82/119 (68.91%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPHPLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICRCGSHNRILRAVEKAAAVMR 357
            +R+GCGLEQCG CMVLIDG+ E  C++ V ++ G+S+TTVEGLG+ +  HPLQQAF++EQAGQCGYCLSGIL++AKA L+ NP PTRAE+A ALD N+CRCGSH RILRAV KAAA +R
Sbjct:   37 SRYGCGLEQCGACMVLIDGSAEYSCSREVGTLGGRSITTVEGLGSAEALHPLQQAFLEEQAGQCGYCLSGILIAAKAFLDRNPDPTRAEVAAALDANLCRCGSHPRILRAVLKAAAALR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15658.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537RDT3_9PROT9.580e-6373.55(2Fe-2S)-binding protein n=1 Tax=Alphaproteobacter... [more]
A0A537V230_9PROT1.930e-6276.03(2Fe-2S)-binding protein n=4 Tax=Bacteria TaxID=2 ... [more]
A0A521M0A1_9HYPH9.900e-5970.83(2Fe-2S)-binding protein n=1 Tax=Reyranella sp. Ta... [more]
UPI00136CE0F88.100e-5870.25(2Fe-2S)-binding protein n=1 Tax=Propylenella binz... [more]
A0A1H8YC93_9PROT1.980e-5767.77Nicotinate dehydrogenase subunit A n=2 Tax=Alphapr... [more]
A0A6A7M5P1_9PROT2.810e-5767.772Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A1X7DL01_9HYPH4.110e-5772.27Nicotinate dehydrogenase subunit A n=1 Tax=Rhizobi... [more]
A0A536X3B8_9PROT1.720e-5669.75(2Fe-2S)-binding protein n=1 Tax=Betaproteobacteri... [more]
A0A8J6PMC7_9HYPH3.370e-5669.75(2Fe-2S)-binding protein n=1 Tax=Oryzicola mucosus... [more]
A0A068T4E9_NEOGA4.780e-5668.91Isoquinoline 1-oxidoreductase, alpha subunit n=5 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15658contigP-wetherbeei_contig15658:1219..1587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1028801.RG1141_PA14110
PFAMsFer2,Fer2_2
Model size369
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00589
KEGG koko:K18029
KEGG ReactionR09473
KEGG Pathwayko00760,ko01120,map00760,map01120
KEGG ModuleM00622
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.08e-59
EggNOG OGsCOG2080@1|root,COG2080@2|Bacteria,1N1KQ@1224|Proteobacteria,2U2YE@28211|Alphaproteobacteria,4BFP7@82115|Rhizobiaceae
EC1.17.2.1
Description[2Fe-2S] binding domain
Cds size369
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.2948163-CDS-P-wetherbeei_contig15658:1218..15871683186063.2948163-CDS-P-wetherbeei_contig15658:1218..1587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15658 1219..1587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15658.2.1prot_P-wetherbeei_contig15658.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15658 1219..1587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15658.2.1

>prot_P-wetherbeei_contig15658.2.1 ID=prot_P-wetherbeei_contig15658.2.1|Name=mRNA_P-wetherbeei_contig15658.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
TRFGCGLEQCGCCMVLIDGAPEKCCAKPVWSVAGKSVTTVEGLGAPDRPH
PLQQAFIDEQAGQCGYCLSGILMSAKALLETNPSPTRAEIALALDGNICR
CGSHNRILRAVEKAAAVMRAGT*
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mRNA from alignment at P-wetherbeei_contig15658:1219..1587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15658.2.1 ID=mRNA_P-wetherbeei_contig15658.2.1|Name=mRNA_P-wetherbeei_contig15658.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig15658:1219..1587- (Phaeothamnion wetherbeei SAG_119_79)
ACACGCTTCGGCTGCGGGCTCGAGCAGTGCGGCTGCTGCATGGTGCTGAT CGACGGCGCGCCCGAGAAGTGCTGCGCCAAGCCGGTGTGGAGCGTCGCCG GCAAAAGCGTCACCACCGTCGAGGGCCTCGGCGCGCCGGACAGGCCGCAT CCGTTGCAGCAGGCCTTCATCGACGAACAGGCCGGGCAATGCGGCTATTG CCTGTCCGGCATCCTGATGTCGGCCAAGGCCTTGCTCGAGACAAATCCAT CGCCGACGCGCGCCGAGATCGCCTTGGCGCTCGACGGCAATATCTGCCGC TGCGGCTCGCACAACCGCATCCTGCGCGCGGTCGAGAAAGCCGCCGCTGT CATGCGCGCGGGGACATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15658:1219..1587-

>mRNA_P-wetherbeei_contig15658.2.1 ID=mRNA_P-wetherbeei_contig15658.2.1|Name=mRNA_P-wetherbeei_contig15658.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig15658:1219..1587- (Phaeothamnion wetherbeei SAG_119_79)
ACACGCTTCGGCTGCGGGCTCGAGCAGTGCGGCTGCTGCATGGTGCTGAT
CGACGGCGCGCCCGAGAAGTGCTGCGCCAAGCCGGTGTGGAGCGTCGCCG
GCAAAAGCGTCACCACCGTCGAGGGCCTCGGCGCGCCGGACAGGCCGCAT
CCGTTGCAGCAGGCCTTCATCGACGAACAGGCCGGGCAATGCGGCTATTG
CCTGTCCGGCATCCTGATGTCGGCCAAGGCCTTGCTCGAGACAAATCCAT
CGCCGACGCGCGCCGAGATCGCCTTGGCGCTCGACGGCAATATCTGCCGC
TGCGGCTCGCACAACCGCATCCTGCGCGCGGTCGAGAAAGCCGCCGCTGT
CATGCGCGCGGGGACATAA
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