mRNA_P-wetherbeei_contig15654.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15654.1.2
Unique NamemRNA_P-wetherbeei_contig15654.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15654.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15654contigP-wetherbeei_contig15654:864..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.105809-CDS-P-wetherbeei_contig15654:863..9501683186063.105809-CDS-P-wetherbeei_contig15654:863..950Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15654 864..950 +
1683186063.1157794-CDS-P-wetherbeei_contig15654:1511..15891683186063.1157794-CDS-P-wetherbeei_contig15654:1511..1589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15654 1512..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15654.1.2prot_P-wetherbeei_contig15654.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15654 864..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15654.1.2

>prot_P-wetherbeei_contig15654.1.2 ID=prot_P-wetherbeei_contig15654.1.2|Name=mRNA_P-wetherbeei_contig15654.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
RRPHRQPQGLRGHRREGARKVRDDQHCLQTRQGGGAREAVQPQVLLRVQR
PQREG
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mRNA from alignment at P-wetherbeei_contig15654:864..1589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15654.1.2 ID=mRNA_P-wetherbeei_contig15654.1.2|Name=mRNA_P-wetherbeei_contig15654.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig15654:864..1589+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCCCACACCGACAGCCGCAAGGCCTTCGTGGACACCGCCGAGAAGG
AGCTCGGAAAGTTCGAGATGACCAACATTGTTTGCAGGTTAGGAGAACTG
AGTATTTTCTTGCCTTCAGAAGGATTCGTTCTGCTTTTTCGAAAAGGGCC
CGGTTGGAGAAGTAAGTGGCTTTCCCAGTTTTGGTGCAACCTTTTTGGAA
TGTGTGGTATGTGTTTCTGTCGAAGTTCGGGCGACGCTCCGCTTTTTGGG
ATCCGGAGCACTGTTCAGTGGCAGCGGTGGCAGCCGCCGAGGTAGTTCTG
GGAAACCGCGGAGTCAGCGCTGCGTTTTGCCCCCCTCTCACCGTTCGGCT
GGCGGCGTCTTCTCTTCCTTTCAGAAGCGCGAGTCTCCTTCTTCCCAGCG
GCCGTCACTAGCTGCGCGCTATCGGATGAAGGGGGAAAGTGCGCTGTCCT
CCTCCGACGGCGGACAGCGATACGTACGGTGCTGCTAGAAAGGGCGATTT
CGTCACCAAGTTTTAACACCCCTTTTCCACTGCTCTTTTTGGCCGCATTT
TGTTGCCGCTGTTGCCTCACGTCGTGCTCTCGTTAATGGCGCAACAACGA
CGGCAATGAAAAATTCTCGGCCGGAAAATTGCATGGGGCGCGCAACAGAC
CCGACAAGGCGGTGGTGCGCGAGAAGCTGTGCAGCCTCAAGTTCTACTGC
GGGTTCAACGTCCTCAACGGGAAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15654:864..1589+

>mRNA_P-wetherbeei_contig15654.1.2 ID=mRNA_P-wetherbeei_contig15654.1.2|Name=mRNA_P-wetherbeei_contig15654.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig15654:864..1589+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCCCACACCGACAGCCGCAAGGCCTTCGTGGACACCGCCGAGAAGG
AGCTCGGAAAGTTCGAGATGACCAACATTGTTTGCAGACCCGACAAGGCG
GTGGTGCGCGAGAAGCTGTGCAGCCTCAAGTTCTACTGCGGGTTCAACGT
CCTCAACGGGAAGGG
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