mRNA_P-wetherbeei_contig15643.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15643.2.1
Unique NamemRNA_P-wetherbeei_contig15643.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A7C4XSY8_9HYPH (DoxX family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XSY8_9HYPH)

HSP 1 Score: 130 bits (328), Expect = 8.180e-37
Identity = 61/96 (63.54%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 QVASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRIL 288
            Q+  ALD WGYRPG LW+ AIA   LV GPLL LGLFT+ AAL  T+FL  +C ERWRVG WFWN  G+EYTLLWA AA + LV G G  SLD +L
Sbjct:   58 QMGEALDKWGYRPGRLWAPAIAITQLVGGPLLALGLFTQAAALPVTIFLLASCYERWRVGGWFWNTQGMEYTLLWAAAAAYFLVHGGGALSLDHLL 153          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A6N7GTC6_9HYPH (DoxX family membrane protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GTC6_9HYPH)

HSP 1 Score: 127 bits (319), Expect = 1.960e-35
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 QVASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRIL 288
            ++A+ LD  GYRPG LW+ AIA   LV GPLL LGLFTRPAA    +FL V  VERWRVGK+FWN+LG+EYT++W VAAF+ +V G GR SLD +L
Sbjct:   60 ELAAQLDRDGYRPGKLWAPAIALTQLVGGPLLALGLFTRPAAFAIFVFLVVTNVERWRVGKYFWNQLGLEYTVMWTVAAFYFVVHGGGRMSLDHLL 155          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A363TS63_9BRAD (DoxX family protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TS63_9BRAD)

HSP 1 Score: 124 bits (311), Expect = 3.290e-34
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    4 VASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRIL 288
            +A  L+  GYRPG +W+  I+   L+ GPLL LGLFTR AAL  T+FL V+CVERWRVG WFWN  GVEYTLLWA+AA + LV G G  SLD +L
Sbjct:   61 LAEHLERGGYRPGRIWAPLISATELIAGPLLALGLFTRLAALPVTIFLIVSCVERWRVGGWFWNTQGVEYTLLWALAALYFLVHGGGALSLDHVL 155          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A537T0H8_9PROT (DoxX family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537T0H8_9PROT)

HSP 1 Score: 113 bits (282), Expect = 7.960e-30
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 QVASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRIL 288
            Q+A  LD  GYRPG  W+ AI+   LV GP+L LGLFTR AA    +FL V+  ERWRVG +FWNK G+EYTL+W +AA + LV G G  SLD +L
Sbjct:   59 QLAQQLDRDGYRPGKFWAPAISLTQLVAGPMLALGLFTRLAAGPIVIFLIVSNYERWRVGGYFWNKTGLEYTLMWTIAALYFLVHGGGTISLDHLL 154          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A1Q7BC88_9PROT (Uncharacterized protein n=4 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BC88_9PROT)

HSP 1 Score: 111 bits (278), Expect = 3.210e-29
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 QVASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRIL 288
            ++A  LD  GYRPG  W+  I+   LV GP+L LGLFTR AA    +FL V+  ERWRVG +FWNK G+EYTL+W VAA + LV G G  SLD +L
Sbjct:   59 ELAKQLDRDGYRPGRFWAPTISLTQLVAGPMLALGLFTRLAACPIVVFLIVSNYERWRVGGYFWNKTGLEYTLMWTVAALYFLVHGGGAISLDHLL 154          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A537V6G0_9PROT (DoxX family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V6G0_9PROT)

HSP 1 Score: 111 bits (277), Expect = 3.730e-28
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 QVASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRIL 288
            ++A  LD  GYRPG  W+ AI+   LV GP+L LGLFTRP A    +FL V+  ERWRVG +FWNK G+EYTL+W VA  + LV G G  S+D +L
Sbjct:  142 ELARQLDRDGYRPGKFWAPAISITQLVGGPMLALGLFTRPVAGAILIFLVVSNYERWRVGGYFWNKTGLEYTLMWTVAVLYFLVHGGGTISVDHLL 237          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A371B2Z9_9HYPH (DoxX family protein n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B2Z9_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 1.270e-15
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   28 GYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRILG 291
            G+ P   W+          G  L LGL TR AAL   +FLAVA ++      ++WN LG EY L WA+   HVLV G GRFS+DR+LG
Sbjct:   58 GFHPPLFWTILTGLTEFGGGLCLALGLLTRLAALPVLVFLAVA-IKFHAANGFYWNNLGFEYPLFWALVVLHVLVRGGGRFSIDRLLG 144          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A086Y4T0_9RHOB (DoxX family protein n=4 Tax=Haematobacter TaxID=366614 RepID=A0A086Y4T0_9RHOB)

HSP 1 Score: 75.9 bits (185), Expect = 2.980e-15
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    4 VASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRV-GKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRILG 291
            +A  +++ G+ P W W+ A+A    V G LL+LGLFTRPAA  AT+ L V     W + G+      G E +L+WA   F  +  G GR+SLDR  G
Sbjct:   58 LAGMVENIGFAPSWFWAFALAITEFVGGILLLLGLFTRPAAAAATVVLLVTVWFHWVLRGE---GYSGAELSLIWAAVTFFFVARGGGRYSLDRAFG 151          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: UPI0008DA7082 (DoxX family protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008DA7082)

HSP 1 Score: 74.3 bits (181), Expect = 1.240e-14
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   28 GYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRILGI 294
            G  PG+L++ A        G  + LGLFTRPAAL  + FLAVA       G +FW   G+EY LLW+V AF + + G  R SLDR LG+
Sbjct:   67 GMEPGFLFALAAGLIEFFGGLAIALGLFTRPAALAVSAFLAVALTVHIPNG-FFWTAGGIEYPLLWSVTAFAIFLRGGDRLSLDRKLGL 154          
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Match: A0A537L294_9PROT (DoxX family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L294_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 2.200e-14
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 QVASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLAVACVERWRVGK-WFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRILG 291
            +  +  ++ GYRPG +W   +A    V G LLVLGLFTR AAL   +F+ VA    +  GK +FW   G+EY+LL  +     L+ G G +SLDR LG
Sbjct:   53 KFTALFNTLGYRPGAVWVTLVALTEFVGGILLVLGLFTRAAALALVIFMIVAV--HFTSGKGFFWTAGGLEYSLLILLVGLVFLIRGGGEYSLDRRLG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15643.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XSY8_9HYPH8.180e-3763.54DoxX family protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A6N7GTC6_9HYPH1.960e-3562.50DoxX family membrane protein n=1 Tax=Hyphomicrobia... [more]
A0A363TS63_9BRAD3.290e-3461.05DoxX family protein n=1 Tax=Bradyrhizobiaceae bact... [more]
A0A537T0H8_9PROT7.960e-3056.25DoxX family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A1Q7BC88_9PROT3.210e-2955.21Uncharacterized protein n=4 Tax=unclassified Alpha... [more]
A0A537V6G0_9PROT3.730e-2854.17DoxX family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A371B2Z9_9HYPH1.270e-1545.45DoxX family protein n=2 Tax=unclassified Pseudolab... [more]
A0A086Y4T0_9RHOB2.980e-1541.24DoxX family protein n=4 Tax=Haematobacter TaxID=36... [more]
UPI0008DA70821.240e-1446.07DoxX family protein n=1 Tax=Halofilum ochraceum Ta... [more]
A0A537L294_9PROT2.200e-1442.86DoxX family protein n=1 Tax=Alphaproteobacteria ba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15643contigP-wetherbeei_contig15643:1281..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog195105.CN97_16530
PFAMsDoxX
Model size306
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K15977
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.88e-16
EggNOG OGsCOG2259@1|root,COG2259@2|Bacteria,1RIVG@1224|Proteobacteria,2UATI@28211|Alphaproteobacteria
DescriptionDoxX family
Cds size306
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.9260125-CDS-P-wetherbeei_contig15643:1280..15861683186062.9260125-CDS-P-wetherbeei_contig15643:1280..1586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15643 1281..1586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15643.2.1prot_P-wetherbeei_contig15643.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15643 1281..1586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15643.2.1

>prot_P-wetherbeei_contig15643.2.1 ID=prot_P-wetherbeei_contig15643.2.1|Name=mRNA_P-wetherbeei_contig15643.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
QVASALDSWGYRPGWLWSKAIAFNHLVCGPLLVLGLFTRPAALVATLFLA
VACVERWRVGKWFWNKLGVEYTLLWAVAAFHVLVTGPGRFSLDRILGIAS
F*
back to top

mRNA from alignment at P-wetherbeei_contig15643:1281..1586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15643.2.1 ID=mRNA_P-wetherbeei_contig15643.2.1|Name=mRNA_P-wetherbeei_contig15643.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig15643:1281..1586- (Phaeothamnion wetherbeei SAG_119_79)
CAAGTAGCGTCGGCGCTCGATAGTTGGGGCTACCGGCCAGGGTGGCTGTG GTCGAAGGCGATCGCGTTCAATCACTTGGTGTGCGGACCATTGCTGGTGC TCGGCCTCTTCACCCGTCCGGCCGCGCTGGTGGCGACGCTGTTCCTGGCG GTGGCGTGCGTGGAACGCTGGCGGGTCGGCAAATGGTTCTGGAACAAGCT GGGCGTCGAGTACACGCTGCTGTGGGCGGTCGCGGCGTTCCATGTGCTCG TCACAGGTCCGGGCAGATTTTCGCTCGACCGGATCCTCGGCATCGCCTCG TTTTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15643:1281..1586-

>mRNA_P-wetherbeei_contig15643.2.1 ID=mRNA_P-wetherbeei_contig15643.2.1|Name=mRNA_P-wetherbeei_contig15643.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig15643:1281..1586- (Phaeothamnion wetherbeei SAG_119_79)
CAAGTAGCGTCGGCGCTCGATAGTTGGGGCTACCGGCCAGGGTGGCTGTG
GTCGAAGGCGATCGCGTTCAATCACTTGGTGTGCGGACCATTGCTGGTGC
TCGGCCTCTTCACCCGTCCGGCCGCGCTGGTGGCGACGCTGTTCCTGGCG
GTGGCGTGCGTGGAACGCTGGCGGGTCGGCAAATGGTTCTGGAACAAGCT
GGGCGTCGAGTACACGCTGCTGTGGGCGGTCGCGGCGTTCCATGTGCTCG
TCACAGGTCCGGGCAGATTTTCGCTCGACCGGATCCTCGGCATCGCCTCG
TTTTGA
back to top