mRNA_P-wetherbeei_contig15643.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15643.1.1
Unique NamemRNA_P-wetherbeei_contig15643.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A7C2QVG1_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QVG1_9HYPH)

HSP 1 Score: 114 bits (284), Expect = 1.400e-28
Identity = 73/177 (41.24%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   40 MSVATAVPASAADLDYGVAG----SAYEDPRYSDIYRHPPP----PPRYAA-----PYAXXXXXXXXXYRDEXXXXXXXXXXXXXXXXXHYQRDGRAPA-GCLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRRADGP----PPPQDW 516
            ++ A +  A AADL  G  G    SAY+DPRY+DIY++PPP    PPRY        YA         +RDE                         PA GC+P+  I++RL  RGW DFHDAQ+ G +A V ARRPSGR F+L +DRCTGEI+ +  ++ RR  GP     PP+ W
Sbjct:   11 LAAAVSTGARAADLYDGPPGDRYGSAYDDPRYADIYKYPPPRHHAPPRYVEVPXXXXYAGPPVPRERVWRDEYGYEPKYGPPPRRYSYAD-------PAYGCVPKDEIKERLLRRGWHDFHDAQLHGEIATVHARRPSGRLFELGIDRCTGEIVSAVPLEPRRF-GPFAYEAPPRRW 179          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A6N6SZ30_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SZ30_9HYPH)

HSP 1 Score: 104 bits (260), Expect = 4.810e-25
Identity = 71/160 (44.38%), Postives = 91/160 (56.88%), Query Frame = 1
Query:   31 LAAMSVATAVP--ASAADLDYGVA----GSAYEDPRYSDIYRHPPPPPRYA--APYAXXXXXXXXXYRDEXXXXXXXXXXXXXXXXXHYQRDG-RAP--AGCLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVD 477
            LAA  +A AV   A AADLD G      GSAYEDPRY+DIYR+P  P +Y+   PYA         YRD+                  Y   G R P  + CLP++ IR RL + GW+DF DAQ  G+ A V+ARRPSGR F+LTVDRC+G ++ +  ++
Sbjct:    6 LAAGLLAAAVSSGAQAADLDDGPPLDRYGSAYEDPRYADIYRYPSRP-QYSEPVPYARPPVPPAPIYRDDDDDDRYDYRGPRRYS---YNXXGPRQPYASHCLPREEIRHRLMQDGWRDFRDAQPWGDRATVQARRPSGRLFELTVDRCSGAVVSARPLE 161          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A537R828_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537R828_9PROT)

HSP 1 Score: 102 bits (253), Expect = 9.230e-24
Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 1
Query:   16 VFATALAAMSVATAVPASAADLDYGVA----GSAYEDPRYSDIYRHP-------PPPPRYAA---PYAXXXXXXXXX------------YRDEXXXXXXXXXXXXXXXXXHYQRDGRAPAG-CLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRRADGP----PPPQDW 516
            VFA +L A +V T   A AADLD G      GSAY+DPRY+DIY++P       PPP  YA    PYAXXXXXXXXX            YR++                  Y       AG C P++++++RL   GW+DFHD  V G +A V ARRP+GR F L + RC+GEI++++ ++G    GP    PPP+ W
Sbjct:    5 VFAASLMAAAVTTG--AQAADLDEGPPPDRYGSAYDDPRYADIYKYPRPPAYGVPPPGPYAGGPPPYAXXXXXXXXXXXXXXXVPREGVYRNDGYGYDRDYAPGPRRYS--YAEPVAPYAGRCAPRELVKERLYRDGWRDFHDGDVRGEIATVHARRPNGRLFVLAIHRCSGEIVRADPLEGGPV-GPYAYGPPPRRW 197          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A125NVZ1_HYPSL (Uncharacterized protein n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A125NVZ1_HYPSL)

HSP 1 Score: 94.0 bits (232), Expect = 3.450e-21
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  268 HYQRDGR--APA----GCLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRRADG-----PPPPQDW 516
            HY  DG    PA    GC+P++V RDRL++ GW+ FH  +  G V  V+ARRP GR +DLT+DRC+GE+++++ + GRRA G     PP P+ W
Sbjct:   48 HYDDDGLYDPPAYGRGGCIPREVARDRLRDAGWRGFHAIEPRGGVVLVKARRPDGRMYDLTIDRCSGEVVEAKPLYGRRAAGYGWGPPPRPEPW 141          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A6I0EEE7_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EEE7_HYPSQ)

HSP 1 Score: 88.6 bits (218), Expect = 3.720e-19
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  271 YQRDGRAPAGCLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRR 486
            Y     A  GC+P++V RDRL+  GW+ FH  +  GNV  V+ARRPSGR FDLT+DRC+GE++ +  + GRR
Sbjct:   58 YPPPAYAERGCVPREVARDRLRAAGWRGFHAVEPHGNVVLVKARRPSGRLFDLTIDRCSGEVVDARPIYGRR 129          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: UPI0019C513F0 (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019C513F0)

HSP 1 Score: 87.8 bits (216), Expect = 7.770e-19
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  301 CLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRR----ADGPP 501
            C+P++V RDRL+  GW+ FH  +    V  V+ARRPSGR FDLT+DRCTGE++ ++ + GRR    ADGPP
Sbjct:   69 CIPREVARDRLRAAGWRGFHAIEPRDGVVLVKARRPSGRLFDLTIDRCTGEVVDAKPIFGRRYGRFADGPP 139          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A3S0EDQ8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3S0EDQ8_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 8.370e-18
Identity = 56/137 (40.88%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   97 GSAYEDPRYSDIYRHP--PPPPRYAAPYAXXXXXXXXXYRDEXXXXXXXXXXXXXXXXXHYQRDGRAPAG-CLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRRADGP 498
            G AYEDPRY+D+YR+P  P PP   AP           YRD+                    R  +A  G C+P+QVIRDRL   GW DF      G +  V ARRPSGR F LT++RC+GE++ +  V    A GP
Sbjct:   36 GPAYEDPRYADVYRYPDRPVPP---APV----------YRDDDYEFRP--------------RPRQAWRGECVPRQVIRDRLIREGWGDFALRDFEGELVTVSARRPSGRPFVLTIERCSGEVVDARPV---HAQGP 142          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A2S5P9F5_HYPSQ (Uncharacterized protein n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P9F5_HYPSQ)

HSP 1 Score: 85.9 bits (211), Expect = 1.090e-17
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  298 GCLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQS 465
            GC+P+ +I+ +L+  GW DFHD ++ G+ AHVRARRPSGR F+L VDRCTGEI+ +
Sbjct:  114 GCVPRHLIKQQLRAEGWSDFHDLELTGSTAHVRARRPSGRLFELKVDRCTGEIVNA 169          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A2W4RLI2_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RLI2_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 3.040e-16
Identity = 63/203 (31.03%), Postives = 84/203 (41.38%), Query Frame = 1
Query:    1 MSIRIVFATALAAMSVATAVPASAADLDYGVA----GSAYEDPRYSDIYRHPPPPPRYAAPYAXXXXXXXXXYRDEXXXXXXXXXXXXXXXXX----------------------HYQRDGRAPAGCLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRRADGPPPPQDWRYRDD 531
            MS+R++ A  + A+ +A + P  AADL    A    GS Y+DPRY+++Y  P P   Y  PYA           D+                                       H ++    PA CL +  +R  L   GW DF D ++ G  A V ARRP+G  + L VDRC GE+     V   R DG      WR RDD
Sbjct:    1 MSLRMLAAGFVTALPLALSTPTVAADLYDPYAPKYSGSPYDDPRYAELYGKPKP---YHRPYAEEPVEDLYEDPDDDDLEPFDPGPPKRYAKPFEEFDEWSDRPRWRKKPDFEPYHPKKTYLPPADCLSRHELRRELVRDGWSDFRDLEIRGKTAFVTARRPNGTLYRLEVDRCAGEV-----VSANRLDGHWDSYAWRRRDD 195          
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Match: A0A6I3KH68_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KH68_9HYPH)

HSP 1 Score: 80.9 bits (198), Expect = 3.580e-16
Identity = 48/138 (34.78%), Postives = 64/138 (46.38%), Query Frame = 1
Query:   94 AGSAYEDPRYSDIYRHPPPPPRYAAPYAXXXXXXXXXYRDEXXXXXXXXXXXXXXXXXHYQRDGRAPAGCLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTGEILQSEAVDGRR---ADGP 498
            A   YE P Y +    PPPP RYA                                   Y     A + C+P++V RDRL+  GW+ FH  +    V  V+ARRPSGR F+LT+DRC+GE++ +  + GR    ADGP
Sbjct:   26 AADLYEPP-YDEYGEGPPPPDRYA--------------------------DVPDDFEPPYPPPAYAESRCVPREVARDRLRAAGWRGFHAVEPRDRVVLVKARRPSGRMFELTIDRCSGEVVDARPIYGRWGRFADGP 136          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15643.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7C2QVG1_9HYPH1.400e-2841.24Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A6N6SZ30_9HYPH4.810e-2544.38Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]
A0A537R828_9PROT9.230e-2441.41Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A125NVZ1_HYPSL3.450e-2146.81Uncharacterized protein n=2 Tax=Hyphomicrobium sul... [more]
A0A6I0EEE7_HYPSQ3.720e-1951.39Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
UPI0019C513F07.770e-1953.52Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A3S0EDQ8_9HYPH8.370e-1840.88Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2S5P9F5_HYPSQ1.090e-1758.93Uncharacterized protein n=2 Tax=Hyphomicrobium sp.... [more]
A0A2W4RLI2_9PROT3.040e-1631.03Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A6I3KH68_9HYPH3.580e-1634.78Uncharacterized protein n=1 Tax=Hyphomicrobium alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15643contigP-wetherbeei_contig15643:568..1116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size549
Hectar predicted targeting categorysignal peptide
Exons1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.8987696-CDS-P-wetherbeei_contig15643:567..11161683186062.8987696-CDS-P-wetherbeei_contig15643:567..1116Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15643 568..1116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15643.1.1prot_P-wetherbeei_contig15643.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15643 568..1116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15643.1.1

>prot_P-wetherbeei_contig15643.1.1 ID=prot_P-wetherbeei_contig15643.1.1|Name=mRNA_P-wetherbeei_contig15643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MSIRIVFATALAAMSVATAVPASAADLDYGVAGSAYEDPRYSDIYRHPPP
PPRYAAPYAPPPAYREPYYRDERYSAAPVPPPYYGGPPPHYQRDGRAPAG
CLPQQVIRDRLQERGWQDFHDAQVAGNVAHVRARRPSGRTFDLTVDRCTG
EILQSEAVDGRRADGPPPPQDWRYRDDRYGRY*
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mRNA from alignment at P-wetherbeei_contig15643:568..1116-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15643.1.1 ID=mRNA_P-wetherbeei_contig15643.1.1|Name=mRNA_P-wetherbeei_contig15643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig15643:568..1116- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATCAGAATCGTGTTTGCCACGGCACTAGCGGCGATGTCGGTGGC GACTGCTGTTCCTGCGAGTGCCGCCGATCTCGACTATGGAGTCGCGGGTT CTGCCTATGAGGACCCGCGTTACAGCGACATCTACCGTCATCCCCCGCCG CCGCCCCGCTATGCCGCCCCCTACGCGCCGCCGCCTGCTTATCGGGAACC TTACTACCGGGACGAGCGCTATTCGGCAGCCCCCGTGCCGCCTCCTTACT ATGGCGGCCCGCCGCCGCACTATCAGCGCGATGGACGTGCGCCCGCTGGC TGTCTGCCGCAGCAGGTGATCCGCGACCGGTTGCAGGAACGTGGCTGGCA GGATTTTCACGACGCCCAGGTGGCGGGTAACGTGGCGCATGTTCGTGCCC GCCGCCCGAGCGGCCGGACGTTCGACCTGACCGTCGATCGCTGCACGGGT GAGATTCTCCAGTCGGAGGCGGTCGATGGACGCCGAGCCGATGGTCCTCC GCCGCCGCAGGATTGGCGCTACCGCGACGACAGGTACGGACGCTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15643:568..1116-

>mRNA_P-wetherbeei_contig15643.1.1 ID=mRNA_P-wetherbeei_contig15643.1.1|Name=mRNA_P-wetherbeei_contig15643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig15643:568..1116- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATCAGAATCGTGTTTGCCACGGCACTAGCGGCGATGTCGGTGGC
GACTGCTGTTCCTGCGAGTGCCGCCGATCTCGACTATGGAGTCGCGGGTT
CTGCCTATGAGGACCCGCGTTACAGCGACATCTACCGTCATCCCCCGCCG
CCGCCCCGCTATGCCGCCCCCTACGCGCCGCCGCCTGCTTATCGGGAACC
TTACTACCGGGACGAGCGCTATTCGGCAGCCCCCGTGCCGCCTCCTTACT
ATGGCGGCCCGCCGCCGCACTATCAGCGCGATGGACGTGCGCCCGCTGGC
TGTCTGCCGCAGCAGGTGATCCGCGACCGGTTGCAGGAACGTGGCTGGCA
GGATTTTCACGACGCCCAGGTGGCGGGTAACGTGGCGCATGTTCGTGCCC
GCCGCCCGAGCGGCCGGACGTTCGACCTGACCGTCGATCGCTGCACGGGT
GAGATTCTCCAGTCGGAGGCGGTCGATGGACGCCGAGCCGATGGTCCTCC
GCCGCCGCAGGATTGGCGCTACCGCGACGACAGGTACGGACGCTACTGA
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