mRNA_P-wetherbeei_contig1564.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1564.2.1
Unique NamemRNA_P-wetherbeei_contig1564.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1564.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1564contigP-wetherbeei_contig1564:2816..4078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1166
Hectar predicted targeting categoryother localisation
Exons2
Cds size963
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.7712736-CDS-P-wetherbeei_contig1564:2815..37501683186062.7712736-CDS-P-wetherbeei_contig1564:2815..3750Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1564 2816..3750 -
1683186062.7808175-CDS-P-wetherbeei_contig1564:3848..38761683186062.7808175-CDS-P-wetherbeei_contig1564:3848..3876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1564 3849..3876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.7897496-UTR-P-wetherbeei_contig1564:3876..40781683186062.7897496-UTR-P-wetherbeei_contig1564:3876..4078Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1564 3877..4078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1564.2.1prot_P-wetherbeei_contig1564.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1564 2816..3876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1564.2.1

>prot_P-wetherbeei_contig1564.2.1 ID=prot_P-wetherbeei_contig1564.2.1|Name=mRNA_P-wetherbeei_contig1564.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MSDSDSDAAGPADSKARTRTVAPDSDSDGTDGATALSPAGRAAAGNGKGK
AARGGKSAVSDDSDNGGGSGDGGGGNAGSSRGADGDDDDASNKAGSGDDG
GGGGGGGGGGGSGAESSSEEEGEVMEEGSDDDGGSASRRKKTKKKRPVGS
GNSDRNKVNRKRSRAARAYVDEMAVDEDAEGDGDDDDEEGDENDDYEYDD
FVVQAADDGDGEGGADKRRERKKKRSRLVKARGATQLDEEDLALIAENAG
KDLREGVGGQQRGPQHPRRHVEEHDFDSDDDDGFIVDDDVGYARDSGGRR
GGRAPSEFDDGGPTQAQMDEA
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mRNA from alignment at P-wetherbeei_contig1564:2816..4078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1564.2.1 ID=mRNA_P-wetherbeei_contig1564.2.1|Name=mRNA_P-wetherbeei_contig1564.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1263bp|location=Sequence derived from alignment at P-wetherbeei_contig1564:2816..4078- (Phaeothamnion wetherbeei SAG_119_79)
TGCTTTTCTTTCGGGCAGTCGCCAAAGCGTCGTCCAAGCCGAACCGCAAG
TGCGCGGAGACGGTCCGCATATTACCAAGAGTTTTTTCTAACAGTGCCTG
CTGGCGCATCTTCGTCCGGCGGAGCAGCGAGAAGAAGGGTGGAGCGACAT
CGTAGGGAAGGAAGCCGCCGTTGCTTCCTGTCCCTGAACTCGACGGAGCG
CCATGTCTGACTCTGATTCAGACGCAGCAGGTAAGCGTCGCAGAGTGGGC
CTCTGTGCTTTTGGCCGAGTTTGTGCGTACGACGATTGTCCTGACATGGG
TTGCATCCGAATGTGCTTTTGGCGCCAGGCCCTGCGGACTCCAAGGCACG
GACCCGCACCGTGGCTCCGGACAGCGACAGCGACGGCACTGACGGCGCAA
CTGCTTTATCGCCCGCCGGCCGTGCCGCTGCTGGCAACGGGAAAGGAAAA
GCTGCTCGCGGAGGAAAGTCAGCTGTCAGCGACGACAGCGACAATGGAGG
CGGCAGCGGCGACGGCGGTGGCGGCAACGCAGGGAGCTCGCGCGGTGCTG
ATGGCGACGACGATGACGCCTCCAATAAGGCGGGCAGCGGCGACGACGGC
GGCGGCGGCGGCGGTGGCGGTGGCGGCGGCGGCAGCGGCGCCGAGTCGTC
TTCCGAAGAGGAAGGCGAGGTGATGGAGGAAGGCTCCGACGATGACGGCG
GCAGCGCCTCCAGGCGCAAAAAGACGAAAAAGAAGCGCCCCGTCGGCAGT
GGCAACAGCGACCGCAACAAGGTTAACCGGAAGCGCTCCCGCGCCGCCCG
CGCCTACGTGGACGAGATGGCAGTCGACGAAGACGCCGAGGGGGACGGCG
ACGACGACGACGAAGAGGGCGACGAGAACGACGACTACGAGTACGACGAC
TTTGTGGTGCAGGCGGCGGACGACGGCGACGGCGAGGGCGGCGCCGACAA
GCGGCGGGAGCGCAAGAAGAAGCGCAGCCGCTTGGTGAAGGCGCGCGGGG
CGACGCAGCTCGACGAGGAGGACCTGGCGCTCATTGCGGAGAATGCCGGG
AAGGACCTGCGGGAGGGCGTCGGCGGGCAGCAGCGCGGCCCGCAACACCC
GCGGCGCCACGTCGAGGAGCACGACTTCGACAGCGATGACGACGACGGCT
TCATCGTGGACGATGATGTTGGCTACGCGCGGGACTCAGGCGGCCGCCGC
GGCGGGCGCGCCCCTAGCGAGTTCGACGACGGCGGCCCGACGCAGGCACA
GATGGATGAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1564:2816..4078-

>mRNA_P-wetherbeei_contig1564.2.1 ID=mRNA_P-wetherbeei_contig1564.2.1|Name=mRNA_P-wetherbeei_contig1564.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig1564:2816..4078- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGACTCTGATTCAGACGCAGCAGGCCCTGCGGACTCCAAGGCACG
GACCCGCACCGTGGCTCCGGACAGCGACAGCGACGGCACTGACGGCGCAA
CTGCTTTATCGCCCGCCGGCCGTGCCGCTGCTGGCAACGGGAAAGGAAAA
GCTGCTCGCGGAGGAAAGTCAGCTGTCAGCGACGACAGCGACAATGGAGG
CGGCAGCGGCGACGGCGGTGGCGGCAACGCAGGGAGCTCGCGCGGTGCTG
ATGGCGACGACGATGACGCCTCCAATAAGGCGGGCAGCGGCGACGACGGC
GGCGGCGGCGGCGGTGGCGGTGGCGGCGGCGGCAGCGGCGCCGAGTCGTC
TTCCGAAGAGGAAGGCGAGGTGATGGAGGAAGGCTCCGACGATGACGGCG
GCAGCGCCTCCAGGCGCAAAAAGACGAAAAAGAAGCGCCCCGTCGGCAGT
GGCAACAGCGACCGCAACAAGGTTAACCGGAAGCGCTCCCGCGCCGCCCG
CGCCTACGTGGACGAGATGGCAGTCGACGAAGACGCCGAGGGGGACGGCG
ACGACGACGACGAAGAGGGCGACGAGAACGACGACTACGAGTACGACGAC
TTTGTGGTGCAGGCGGCGGACGACGGCGACGGCGAGGGCGGCGCCGACAA
GCGGCGGGAGCGCAAGAAGAAGCGCAGCCGCTTGGTGAAGGCGCGCGGGG
CGACGCAGCTCGACGAGGAGGACCTGGCGCTCATTGCGGAGAATGCCGGG
AAGGACCTGCGGGAGGGCGTCGGCGGGCAGCAGCGCGGCCCGCAACACCC
GCGGCGCCACGTCGAGGAGCACGACTTCGACAGCGATGACGACGACGGCT
TCATCGTGGACGATGATGTTGGCTACGCGCGGGACTCAGGCGGCCGCCGC
GGCGGGCGCGCCCCTAGCGAGTTCGACGACGGCGGCCCGACGCAGGCACA
GATGGATGAGGCC
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