mRNA_P-wetherbeei_contig15629.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15629.1.1
Unique NamemRNA_P-wetherbeei_contig15629.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15629contigP-wetherbeei_contig15629:59..1068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra77773
Model size1010
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.17e-05
EggNOG OGs2CZG9@1|root,2SA9D@2759|Eukaryota,3Q9IK@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_001980.1
Cds size969
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.515738-UTR-P-wetherbeei_contig15629:58..761683186062.515738-UTR-P-wetherbeei_contig15629:58..76Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15629 59..76 +
1683186062.5356073-UTR-P-wetherbeei_contig15629:1045..10681683186062.5356073-UTR-P-wetherbeei_contig15629:1045..1068Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15629 1046..1068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.526069-CDS-P-wetherbeei_contig15629:76..10451683186062.526069-CDS-P-wetherbeei_contig15629:76..1045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15629 77..1045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15629.1.1prot_P-wetherbeei_contig15629.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15629 77..1045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15629.1.1

>prot_P-wetherbeei_contig15629.1.1 ID=prot_P-wetherbeei_contig15629.1.1|Name=mRNA_P-wetherbeei_contig15629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MKVCFFFFPFCEDARDPYVFRMYSFSQSIDSLVIPLIPVKVFALDVATSQ
THLVQYVCEVLVCLHLPPPTMAPFVSAQWDAGGSATVPGAAAVPPPKPRE
LSPAAKRLLDRLSILQRITVTLVIDDVVFMGPADAPQVADGAAATVRALA
EICDLYLIARVDSDDHEAHVAQLAQQAGIIASATADGTAGPAAAAAASRN
DGDTKNEKNGIGSTFGSSGAAGSGGSGASSGSGSGVGVGGSGGGGGVVPH
KLLFCSGGVGVMACVRQLRPRLHIDSSVPRLDELARHVPDLIRIAPDAQP
AAPGAVPRWRELHTLSALLAEG*
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mRNA from alignment at P-wetherbeei_contig15629:59..1068+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15629.1.1 ID=mRNA_P-wetherbeei_contig15629.1.1|Name=mRNA_P-wetherbeei_contig15629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1010bp|location=Sequence derived from alignment at P-wetherbeei_contig15629:59..1068+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTCCCCGGGACAGCAATGAAGGTCTGTTTTTTTTTTTTTCCCTTTTG
TGAGGATGCTCGTGATCCTTACGTCTTTCGGATGTATTCCTTCTCGCAAT
CCATTGATTCCTTGGTCATACCCTTAATTCCAGTGAAAGTTTTCGCTCTC
GACGTAGCCACCTCTCAAACACATCTCGTTCAATATGTATGTGAAGTGCT
GGTTTGTTTGCATCTGCCGCCTCCCACAATGGCACCTTTTGTGTCTGCGC
AGTGGGACGCCGGCGGAAGCGCTACCGTACCTGGCGCAGCAGCGGTACCG
CCCCCAAAGCCCCGAGAACTGTCGCCAGCGGCGAAGCGCCTTCTCGATCG
GCTCTCGATTCTCCAAAGGATAACAGTGACGCTAGTGATAGATGACGTTG
TCTTTATGGGGCCTGCGGACGCCCCGCAAGTCGCCGACGGCGCCGCCGCT
ACTGTTCGGGCACTTGCCGAAATCTGCGACTTATATCTCATCGCCCGTGT
TGACTCGGACGACCACGAAGCCCATGTGGCGCAGCTGGCGCAGCAAGCTG
GCATCATCGCTTCTGCCACCGCCGACGGAACCGCCGGGCCTGCGGCCGCC
GCCGCCGCCAGCAGAAATGATGGAGACACAAAGAACGAAAAGAACGGTAT
TGGCAGCACTTTTGGAAGCAGCGGGGCGGCAGGTAGCGGCGGCAGCGGAG
CGAGTAGTGGCAGTGGGAGCGGCGTCGGCGTCGGTGGCAGCGGCGGCGGG
GGCGGGGTTGTGCCGCACAAGCTGCTCTTTTGCTCGGGTGGTGTCGGTGT
GATGGCCTGCGTGCGGCAGCTGCGGCCGCGGCTGCACATCGATTCGTCGG
TCCCGCGGCTGGACGAGTTGGCGCGGCACGTGCCGGACCTCATTCGCATC
GCGCCGGATGCGCAGCCTGCGGCGCCGGGGGCCGTGCCCAGGTGGAGGGA
ACTTCACACACTAAGCGCCTTGCTCGCCGAAGGATAACATCATCTTTTTG
AGTTCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15629:59..1068+

>mRNA_P-wetherbeei_contig15629.1.1 ID=mRNA_P-wetherbeei_contig15629.1.1|Name=mRNA_P-wetherbeei_contig15629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig15629:59..1068+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTCTGTTTTTTTTTTTTTCCCTTTTGTGAGGATGCTCGTGATCC
TTACGTCTTTCGGATGTATTCCTTCTCGCAATCCATTGATTCCTTGGTCA
TACCCTTAATTCCAGTGAAAGTTTTCGCTCTCGACGTAGCCACCTCTCAA
ACACATCTCGTTCAATATGTATGTGAAGTGCTGGTTTGTTTGCATCTGCC
GCCTCCCACAATGGCACCTTTTGTGTCTGCGCAGTGGGACGCCGGCGGAA
GCGCTACCGTACCTGGCGCAGCAGCGGTACCGCCCCCAAAGCCCCGAGAA
CTGTCGCCAGCGGCGAAGCGCCTTCTCGATCGGCTCTCGATTCTCCAAAG
GATAACAGTGACGCTAGTGATAGATGACGTTGTCTTTATGGGGCCTGCGG
ACGCCCCGCAAGTCGCCGACGGCGCCGCCGCTACTGTTCGGGCACTTGCC
GAAATCTGCGACTTATATCTCATCGCCCGTGTTGACTCGGACGACCACGA
AGCCCATGTGGCGCAGCTGGCGCAGCAAGCTGGCATCATCGCTTCTGCCA
CCGCCGACGGAACCGCCGGGCCTGCGGCCGCCGCCGCCGCCAGCAGAAAT
GATGGAGACACAAAGAACGAAAAGAACGGTATTGGCAGCACTTTTGGAAG
CAGCGGGGCGGCAGGTAGCGGCGGCAGCGGAGCGAGTAGTGGCAGTGGGA
GCGGCGTCGGCGTCGGTGGCAGCGGCGGCGGGGGCGGGGTTGTGCCGCAC
AAGCTGCTCTTTTGCTCGGGTGGTGTCGGTGTGATGGCCTGCGTGCGGCA
GCTGCGGCCGCGGCTGCACATCGATTCGTCGGTCCCGCGGCTGGACGAGT
TGGCGCGGCACGTGCCGGACCTCATTCGCATCGCGCCGGATGCGCAGCCT
GCGGCGCCGGGGGCCGTGCCCAGGTGGAGGGAACTTCACACACTAAGCGC
CTTGCTCGCCGAAGGATAA
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