mRNA_P-wetherbeei_contig15627.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15627.1.1
Unique NamemRNA_P-wetherbeei_contig15627.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A127ENZ7_9HYPH (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ENZ7_9HYPH)

HSP 1 Score: 236 bits (603), Expect = 7.570e-78
Identity = 117/145 (80.69%), Postives = 133/145 (91.72%), Query Frame = 1
Query:    4 ERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            ERELAER+RKRAEQ GRR+GFRDVEV+EIRESRAQ+ GKR +EESIAL ++IPDKA I+ILDERG++LDSA LA  LGRWRDDGR A VFIIGGDDGLAP+LRDKASL++AFGAATWPHQLVR MLLEQ+YRA +IL+GHPYHRA
Sbjct:   16 ERELAERFRKRAEQSGRRLGFRDVEVVEIRESRAQDTGKRTLEESIALTSIIPDKAIIIILDERGESLDSATLANRLGRWRDDGRPATVFIIGGDDGLAPALRDKASLKLAFGAATWPHQLVRVMLLEQIYRATSILAGHPYHRA 160          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A346A0D5_9HYPH (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A0D5_9HYPH)

HSP 1 Score: 211 bits (537), Expect = 8.260e-68
Identity = 105/146 (71.92%), Postives = 124/146 (84.93%), Query Frame = 1
Query:    1 SERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            +E EL+ERYRKRA Q GR++G+RDVE++EIRESRA +  KRM+EESIALANVIP  AA+V+LD RGDNLDS A A  L +WR   + A VFIIGG DGLAPSL+DKA+LR+AFG ATWPHQ+VRAMLLEQ+YRA TIL+GHPYHRA
Sbjct:   14 AETELSERYRKRAAQTGRQLGWRDVEIVEIRESRADDANKRMLEESIALANVIPQGAAVVLLDARGDNLDSTAFANQLAQWRAADKPATVFIIGGADGLAPSLKDKATLRLAFGTATWPHQMVRAMLLEQIYRAATILTGHPYHRA 159          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A1Q4DIX2_9HYPH (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DIX2_9HYPH)

HSP 1 Score: 202 bits (515), Expect = 1.910e-64
Identity = 102/145 (70.34%), Postives = 120/145 (82.76%), Query Frame = 1
Query:    4 ERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            E EL ERYRKRA Q GR +G+RDVE++EIRESRAQ+  +RM+EESIALA+VIPD + +V+LDERGD+LDSAA A  L  WR + + AA FIIGG DGLAPSLR +A+L +AFGAATWPHQ VR MLLEQ+YRA TIL GHPYHRA
Sbjct:   16 ETELCERYRKRAIQSGRALGWRDVEIVEIRESRAQDAERRMVEESIALASVIPDHSVLVLLDERGDSLDSAAFAGRLAAWRSEAKPAATFIIGGADGLAPSLRQRATLHLAFGAATWPHQFVRIMLLEQLYRAATILGGHPYHRA 160          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A327K851_9HYPH (Ribosomal RNA large subunit methyltransferase H n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327K851_9HYPH)

HSP 1 Score: 199 bits (507), Expect = 3.150e-63
Identity = 104/146 (71.23%), Postives = 118/146 (80.82%), Query Frame = 1
Query:    1 SERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            +ERELA+RYR R E+ GR IG R +EVIEIRESRA EV +R +EE+IALANVI D AA V LDERGDNLDSAALA  +G WRD GR  AVF+IGG DGL   +R +A L ++FGAATWPHQLVR MLLEQ+YRA TILSGHPYHRA
Sbjct:   15 AERELADRYRDRLEKAGRGIGLRGIEVIEIRESRAHEVERRRLEEAIALANVIADGAATVALDERGDNLDSAALAGHIGAWRDAGREQAVFVIGGADGLGDEIRRRAGLTLSFGAATWPHQLVRVMLLEQLYRAATILSGHPYHRA 160          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A371BA86_9HYPH (Ribosomal RNA large subunit methyltransferase H n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371BA86_9HYPH)

HSP 1 Score: 197 bits (500), Expect = 3.540e-62
Identity = 102/144 (70.83%), Postives = 118/144 (81.94%), Query Frame = 1
Query:    4 ERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHR 435
            E ELAERY KRA Q GR +G++ VEV+EIRESRA E  KRM+EESIALANVIP  AA+V+LDE+GD L S A AT L  WR++ + A VF+IGG DGLA SLRDKA LR++FG ATWPHQLVRAM+LEQ+YRA TILSGHPYHR
Sbjct:   15 ESELAERYAKRATQSGRSLGWKSVEVVEIRESRADEAMKRMMEESIALANVIPQGAAVVLLDEKGDALGSQAFATELATWRENNKPAVVFMIGGADGLAASLRDKADLRLSFGKATWPHQLVRAMVLEQLYRATTILSGHPYHR 158          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A0Q7TNU9_9HYPH (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TNU9_9HYPH)

HSP 1 Score: 196 bits (499), Expect = 5.030e-62
Identity = 104/145 (71.72%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    4 ERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            E ELAERY KRA Q GR +G++ VEVIEIRESRA EV KRM+EESIALANVIP  AA+ +LDE+GD L S A AT L  WR +   A VF+IGG DGLA SLRDKASLR++FG ATWPHQ+VR MLLEQ+YRA TILSGHPYHRA
Sbjct:   15 ESELAERYLKRANQAGRALGWKAVEVIEIRESRADEVMKRMLEESIALANVIPQGAAVALLDEKGDALGSEAFATELATWRGNNVPAVVFMIGGADGLAASLRDKASLRLSFGKATWPHQMVRVMLLEQLYRATTILSGHPYHRA 159          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A6L5FM77_9HYPH (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FM77_9HYPH)

HSP 1 Score: 194 bits (494), Expect = 2.990e-61
Identity = 97/145 (66.90%), Postives = 119/145 (82.07%), Query Frame = 1
Query:    4 ERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            ER+LAERY KRA   GR++ F  ++VIE+RESR+++VGKRMIEESIALAN +PD A+I++LD RG++L S ALA  L RW+D GR A  F+IGG DGLA SL ++A LR+AFG ATWPHQLVR MLLEQ+YR MTIL+GHPYHRA
Sbjct:   16 ERDLAERYAKRAADAGRQLRFAPIDVIEVRESRSRDVGKRMIEESIALANTVPDGASIIVLDPRGESLGSDALAARLRRWQDGGRPAVTFLIGGPDGLAASLFERAELRLAFGIATWPHQLVRIMLLEQLYRTMTILAGHPYHRA 160          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A363TYD0_9BRAD (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TYD0_9BRAD)

HSP 1 Score: 193 bits (491), Expect = 8.560e-61
Identity = 95/145 (65.52%), Postives = 120/145 (82.76%), Query Frame = 1
Query:    1 SERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHR 435
            +ER+L  RY +RA + GR IGFR ++++EI ES A++  +RM EESIA+A+VIPD A +V+LDERG+NLDS + A LL RWRD+GR AA F+IGG DG+A +LR +A LR+AFGAATWPHQLVR MLLEQ+YRA+TILSGHPYHR
Sbjct:   15 AERDLVARYHERAVRAGRAIGFRALDLVEIGESPARDAARRMTEESIAIASVIPDGATVVVLDERGENLDSPSFADLLRRWRDNGRPAAAFVIGGPDGIAVTLRQRAELRLAFGAATWPHQLVRVMLLEQLYRAVTILSGHPYHR 159          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A327L4W9_9HYPH (Ribosomal RNA large subunit methyltransferase H n=2 Tax=Rhodoplanes TaxID=29407 RepID=A0A327L4W9_9HYPH)

HSP 1 Score: 192 bits (489), Expect = 1.730e-60
Identity = 97/146 (66.44%), Postives = 118/146 (80.82%), Query Frame = 1
Query:    1 SERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            +ER+LAERY  R E+ GR IG R +EV+EIR+SRAQEV +R +EE+IALANVIPD AA V+LDE G NLDSA +A  +  WRD GR AAVF+IGG DGL   +R +A + ++FGAATWPHQLVR MLLEQ+YR++TILSGHPYHRA
Sbjct:   15 AERDLAERYLDRLEKAGRAIGLRGIEVVEIRDSRAQEVERRRLEEAIALANVIPDGAAAVVLDEHGRNLDSATIAGEIRGWRDSGREAAVFVIGGADGLGAEIRRRADVTLSFGAATWPHQLVRVMLLEQLYRSVTILSGHPYHRA 160          
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Match: A0A537SYH3_9PROT (Ribosomal RNA large subunit methyltransferase H n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SYH3_9PROT)

HSP 1 Score: 192 bits (488), Expect = 2.450e-60
Identity = 97/145 (66.90%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    4 ERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALANVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLAPSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA 438
            ERELAERYRKRA   GR++G   V+++EI+ESRA++  +RM+EESIA+AN+IPD A  VILDERG+ + SAA A  L  WR  G+ A VF IG  DGLAPSLR+KASL IAFGAATWPHQL+R MLLEQ+YR +TIL+GHPYHRA
Sbjct:   16 ERELAERYRKRALDAGRKLGLSAVDIVEIKESRARDAARRMLEESIAIANMIPDGAVTVILDERGETMSSAAFAARLQEWRRRGKPAVVFAIGAADGLAPSLREKASLVIAFGAATWPHQLIRIMLLEQLYRGVTILTGHPYHRA 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15627.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127ENZ7_9HYPH7.570e-7880.69Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A346A0D5_9HYPH8.260e-6871.92Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A1Q4DIX2_9HYPH1.910e-6470.34Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A327K851_9HYPH3.150e-6371.23Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A371BA86_9HYPH3.540e-6270.83Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A0Q7TNU9_9HYPH5.030e-6271.72Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A6L5FM77_9HYPH2.990e-6166.90Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A363TYD0_9BRAD8.560e-6165.52Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A327L4W9_9HYPH1.730e-6066.44Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A537SYH3_9PROT2.450e-6066.90Ribosomal RNA large subunit methyltransferase H n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15627contigP-wetherbeei_contig15627:1..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog172088.AUGA01000018_gene2222
Preferred namerlmH
PFAMsSPOUT_MTase
Model size441
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K00783
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.4e-60
EggNOG OGsCOG1576@1|root,COG1576@2|Bacteria,1R9Z2@1224|Proteobacteria,2U95Q@28211|Alphaproteobacteria,3JTKT@41294|Bradyrhizobiaceae
EC2.1.1.177
DescriptionSpecifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
Cds size441
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.4644272-CDS-P-wetherbeei_contig15627:0..4411683186062.4644272-CDS-P-wetherbeei_contig15627:0..441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15627 1..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15627.1.1prot_P-wetherbeei_contig15627.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15627 1..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15627.1.1

>prot_P-wetherbeei_contig15627.1.1 ID=prot_P-wetherbeei_contig15627.1.1|Name=mRNA_P-wetherbeei_contig15627.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
SERELAERYRKRAEQVGRRIGFRDVEVIEIRESRAQEVGKRMIEESIALA
NVIPDKAAIVILDERGDNLDSAALATLLGRWRDDGRSAAVFIIGGDDGLA
PSLRDKASLRIAFGAATWPHQLVRAMLLEQVYRAMTILSGHPYHRA*
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mRNA from alignment at P-wetherbeei_contig15627:1..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15627.1.1 ID=mRNA_P-wetherbeei_contig15627.1.1|Name=mRNA_P-wetherbeei_contig15627.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig15627:1..441+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGAACGGGAGCTGGCGGAGCGCTACCGCAAGCGCGCCGAGCAGGTCGG CCGCCGCATCGGCTTTCGCGACGTCGAGGTCATCGAGATTCGCGAGAGCC GGGCGCAGGAGGTGGGTAAGCGGATGATCGAGGAATCGATCGCGCTGGCC AATGTGATCCCCGACAAGGCCGCGATCGTCATTTTGGATGAGCGCGGCGA CAACCTCGACAGCGCGGCGCTCGCGACGCTGCTCGGCCGCTGGCGCGACG ACGGGCGGTCTGCCGCAGTTTTTATCATCGGCGGCGATGATGGGCTGGCG CCGAGCCTGCGCGACAAGGCGAGCCTGCGGATTGCCTTCGGCGCCGCCAC CTGGCCGCATCAGCTGGTGCGCGCCATGCTGCTGGAGCAAGTCTATCGCG CCATGACGATCCTCTCCGGCCACCCCTATCACCGGGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15627:1..441+

>mRNA_P-wetherbeei_contig15627.1.1 ID=mRNA_P-wetherbeei_contig15627.1.1|Name=mRNA_P-wetherbeei_contig15627.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig15627:1..441+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGAACGGGAGCTGGCGGAGCGCTACCGCAAGCGCGCCGAGCAGGTCGG
CCGCCGCATCGGCTTTCGCGACGTCGAGGTCATCGAGATTCGCGAGAGCC
GGGCGCAGGAGGTGGGTAAGCGGATGATCGAGGAATCGATCGCGCTGGCC
AATGTGATCCCCGACAAGGCCGCGATCGTCATTTTGGATGAGCGCGGCGA
CAACCTCGACAGCGCGGCGCTCGCGACGCTGCTCGGCCGCTGGCGCGACG
ACGGGCGGTCTGCCGCAGTTTTTATCATCGGCGGCGATGATGGGCTGGCG
CCGAGCCTGCGCGACAAGGCGAGCCTGCGGATTGCCTTCGGCGCCGCCAC
CTGGCCGCATCAGCTGGTGCGCGCCATGCTGCTGGAGCAAGTCTATCGCG
CCATGACGATCCTCTCCGGCCACCCCTATCACCGGGCGTGA
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