mRNA_P-wetherbeei_contig15623.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15623.1.1
Unique NamemRNA_P-wetherbeei_contig15623.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A4Q0SZL8_9BACT (Putative conserved protein, contains double-stranded beta-helix domain n=1 Tax=Granulicella sibirica TaxID=2479048 RepID=A0A4Q0SZL8_9BACT)

HSP 1 Score: 158 bits (399), Expect = 7.860e-47
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRHDFEETF+L EGE+   FRG+K TV AGETI++PANAPHQF NASD+P R+LC+C+P G E+ F E+GV V TRTTPPP  + EE+ A G KA+ LAPKYRTE L
Sbjct:   61 PPHRHDFEETFTLLEGEMVATFRGKKTTVHAGETIHIPANAPHQFHNASDKPVRLLCLCAPAGQEEFFLEVGVRVPTRTTPPPPLSKEEQAAFGKKAQELAPKYRTEFL 169
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: E8X474_GRATM (Cupin 2 conserved barrel domain protein n=1 Tax=Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9) TaxID=1198114 RepID=E8X474_GRATM)

HSP 1 Score: 155 bits (391), Expect = 1.410e-45
Identity = 70/109 (64.22%), Postives = 90/109 (82.57%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRHDFEETF + +GEL  +FRG+K  V+AGET+++P+NAPHQF N+SD+P RMLCICSP G E+MF EIGV V TRTT PP  + +E+KA  A+A++LAPKY+TE+L
Sbjct:   64 PPHRHDFEETFIVLDGELSAIFRGQKMAVKAGETVHIPSNAPHQFHNSSDKPVRMLCICSPAGQEEMFLEIGVPVATRTTAPPPLSEDEQKAFRAQAEALAPKYKTELL 172
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A075MQW7_9ARCH (Cupin domain-containing protein n=1 Tax=Candidatus Nitrososphaera evergladensis SR1 TaxID=1459636 RepID=A0A075MQW7_9ARCH)

HSP 1 Score: 154 bits (389), Expect = 3.720e-45
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRHDFEETF + EGELE  FRG K+ VRAGETIN+PANAPHQFRN+S +P RMLCICSP G E  F E+GV V TRTTPPP      +    AKA +LAPKYRTE+L
Sbjct:   73 PPHRHDFEETFIMLEGELEATFRGTKRAVRAGETINIPANAPHQFRNSSSQPVRMLCICSPPGQEDFFMEVGVPVATRTTPPPMLDEAAQAEFRAKAAALAPKYRTELL 181
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A402CYM4_9BACT (Cupin 2 conserved barrel domain protein n=1 Tax=Capsulimonas corticalis TaxID=2219043 RepID=A0A402CYM4_9BACT)

HSP 1 Score: 153 bits (387), Expect = 7.260e-45
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEMLGP 407
            PPHRHDFEETF L EGE+E  FRG K T++AGETI++PANAPHQF N SD+PARMLCICSP G E+ F E+GV V TRT  PP     ++ A  AKA++LAP+YRTE+L P
Sbjct:   72 PPHRHDFEETFILHEGEVEATFRGAKSTIKAGETIHIPANAPHQFHNVSDQPARMLCICSPAGQEQFFLEVGVPVATRTAAPPKLDEAQQAAFRAKAEALAPQYRTELLPP 182
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A1H5XUB7_9BACT (Cupin domain-containing protein n=1 Tax=Bryocella elongata TaxID=863522 RepID=A0A1H5XUB7_9BACT)

HSP 1 Score: 152 bits (385), Expect = 1.260e-44
Identity = 73/109 (66.97%), Postives = 83/109 (76.15%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRHDFEETF L EGE+   FRG K  VRAG+TIN+PANAPHQF NAS    R+LCICSP G EK F E+G+ V TRTTPPP+ T EE+ A  AK  +LAPKYRTE+L
Sbjct:   67 PPHRHDFEETFILLEGEMVATFRGAKTVVRAGDTINIPANAPHQFHNASSSATRLLCICSPAGQEKFFAEVGIPVATRTTPPPALTGEEQAAFIAKVVALAPKYRTELL 175
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: UPI0015D8ECAB (cupin domain-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0015D8ECAB)

HSP 1 Score: 152 bits (383), Expect = 2.170e-44
Identity = 73/109 (66.97%), Postives = 82/109 (75.23%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRHDFEETF + EGE+E  FRG+K TVRAG+TINVPANAPHQF N S  P RM CICSP G E +F E+GV V TRTTPPP     E+ A   K K+LAPKYRTE+L
Sbjct:   62 PPHRHDFEETFIVIEGEIEATFRGKKSTVRAGDTINVPANAPHQFHNVSANPVRMFCICSPSGQEGLFLEVGVPVATRTTPPPKLDPTEQAAFLEKVKALAPKYRTELL 170
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A7W8E9N7_9BACT (Quercetin dioxygenase-like cupin family protein n=2 Tax=Granulicella mallensis TaxID=940614 RepID=A0A7W8E9N7_9BACT)

HSP 1 Score: 151 bits (382), Expect = 3.580e-44
Identity = 69/109 (63.30%), Postives = 86/109 (78.90%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRH+FEETF L +GE+E  FRG++ TVRAG+TINVP+NAPHQF NAS +PARM+CICSP G ++ F E+GV V TRTTPPP    ++      +AK+LAPKYRTE+L
Sbjct:   67 PPHRHEFEETFILLDGEMEVTFRGDRSTVRAGDTINVPSNAPHQFHNASSKPARMICICSPSGNDEFFLEVGVPVATRTTPPPELDEQQRIEFMERAKALAPKYRTELL 175
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BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A7G8BCU0_9BACT (Cupin domain-containing protein n=1 Tax=Acidobacterium sp. 4Y35 TaxID=2763107 RepID=A0A7G8BCU0_9BACT)

HSP 1 Score: 151 bits (382), Expect = 3.580e-44
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRHDFEETF L +GEL+  FRGE++ VRAGETI+VPANAPHQF NAS +P RMLCICSP G E+ F+EIG  V TRTTPPP     +E A   K   LAP+YRTE+L
Sbjct:   66 PPHRHDFEETFILLDGELQATFRGEQRIVRAGETIHVPANAPHQFHNASSKPVRMLCICSPAGQEEFFKEIGAPVATRTTPPPKVDAAQEAAFFKKVMELAPRYRTELL 174
[Close]
BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A7W8N7B9_9BACT (Quercetin dioxygenase-like cupin family protein n=2 Tax=Edaphobacter lichenicola TaxID=2051959 RepID=A0A7W8N7B9_9BACT)

HSP 1 Score: 151 bits (382), Expect = 3.580e-44
Identity = 71/109 (65.14%), Postives = 84/109 (77.06%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEML 401
            PPHRHDFEE+F L +GEL+  FRGE++T+RAGET+++PANAPHQF NAS  P RMLCICSP G E+ F+E+G VV TRTTPPP     E  A   KA  LAPKYRTE+L
Sbjct:   66 PPHRHDFEESFILLDGELQATFRGEQRTMRAGETVHIPANAPHQFHNASSEPVRMLCICSPAGQEEFFKELGAVVATRTTPPPRVDAAEGAAFFKKAVELAPKYRTELL 174
[Close]
BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Match: A0A1I6M7H2_9BACT (Cupin domain-containing protein n=1 Tax=Granulicella pectinivorans TaxID=474950 RepID=A0A1I6M7H2_9BACT)

HSP 1 Score: 150 bits (378), Expect = 1.400e-43
Identity = 74/111 (66.67%), Postives = 83/111 (74.77%), Query Frame = 3 
Query:   75 PPHRHDFEETFSLTEGELEFVFRGEKKTVRAGETINVPANAPHQFRNASDRPARMLCICSPGG*EKMFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEMLGP 407
            PPHRHDFEE+F L EGELE  FRGEK TVRAGET++VPANAPHQFRN S    RMLCICSP G E+ FE++GV V TRTT PP+     EKA   KA +L  KYRTEM+ P
Sbjct:   67 PPHRHDFEESFLLLEGELEATFRGEKVTVRAGETVHVPANAPHQFRNVSAAATRMLCICSPAGQEEFFEQVGVPVSTRTTAPPNLDEAGEKAFREKAGALLGKYRTEMVHP 177
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15623.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Q0SZL8_9BACT7.860e-4766.97Putative conserved protein, contains double-strand... [more]
E8X474_GRATM1.410e-4564.22Cupin 2 conserved barrel domain protein n=1 Tax=Gr... [more]
A0A075MQW7_9ARCH3.720e-4567.89Cupin domain-containing protein n=1 Tax=Candidatus... [more]
A0A402CYM4_9BACT7.260e-4564.86Cupin 2 conserved barrel domain protein n=1 Tax=Ca... [more]
A0A1H5XUB7_9BACT1.260e-4466.97Cupin domain-containing protein n=1 Tax=Bryocella ... [more]
UPI0015D8ECAB2.170e-4466.97cupin domain-containing protein n=1 Tax=Nevskia so... [more]
A0A7W8E9N7_9BACT3.580e-4463.30Quercetin dioxygenase-like cupin family protein n=... [more]
A0A7G8BCU0_9BACT3.580e-4466.06Cupin domain-containing protein n=1 Tax=Acidobacte... [more]
A0A7W8N7B9_9BACT3.580e-4465.14Quercetin dioxygenase-like cupin family protein n=... [more]
A0A1I6M7H2_9BACT1.400e-4366.67Cupin domain-containing protein n=1 Tax=Granulicel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15623contigP-wetherbeei_contig15623:618..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1198114.AciX9_0043
PFAMsCupin_2
Model size410
Max annot lvl204432|Acidobacteriia
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.74e-08
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,3Y4MC@57723|Acidobacteria,2JJ8V@204432|Acidobacteriia
DescriptionPFAM Cupin 2, conserved barrel
Cds size138
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.3660507-UTR-P-wetherbeei_contig15623:617..8891683186062.3660507-UTR-P-wetherbeei_contig15623:617..889Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15623 618..889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.3818567-CDS-P-wetherbeei_contig15623:889..10271683186062.3818567-CDS-P-wetherbeei_contig15623:889..1027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15623 890..1027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15623.1.1prot_P-wetherbeei_contig15623.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15623 890..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15623.1.1

>prot_P-wetherbeei_contig15623.1.1 ID=prot_P-wetherbeei_contig15623.1.1|Name=mRNA_P-wetherbeei_contig15623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
MFEEIGVVVDTRTTPPPSPTHEEEKALGAKAKSLAPKYRTEMLGP*
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mRNA from alignment at P-wetherbeei_contig15623:618..1027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15623.1.1 ID=mRNA_P-wetherbeei_contig15623.1.1|Name=mRNA_P-wetherbeei_contig15623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=410bp|location=Sequence derived from alignment at P-wetherbeei_contig15623:618..1027+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCTCGTCCGCAGCGAAGACACGAACGGCCGCTTCTCGCTGATCGATAT
GTTTGTCCCGCCCGGAGGCGGTCCCCCCCCCATCGCCACGACTTCGAGGA
GACGTTCTCGTTAACCGAAGGTGAGCTTGAATTCGTGTTTCGCGGGGAGA
AGAAGACAGTTCGGGCCGGGGAGACGATCAACGTCCCCGCTAACGCTCCC
CACCAGTTCCGCAACGCGAGCGATAGACCGGCCAGGATGCTCTGCATCTG
CTCGCCCGGCGGTTAGGAGAAGATGTTCGAAGAGATTGGAGTTGTGGTAG
ATACCCGCACCACGCCTCCCCCGAGCCCGACCCACGAAGAAGAGAAAGCG
CTCGGGGCTAAGGCAAAATCCCTGGCGCCCAAATATCGCACCGAGATGCT
CGGGCCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15623:618..1027+

>mRNA_P-wetherbeei_contig15623.1.1 ID=mRNA_P-wetherbeei_contig15623.1.1|Name=mRNA_P-wetherbeei_contig15623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig15623:618..1027+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGAAGAGATTGGAGTTGTGGTAGATACCCGCACCACGCCTCCCCC
GAGCCCGACCCACGAAGAAGAGAAAGCGCTCGGGGCTAAGGCAAAATCCC
TGGCGCCCAAATATCGCACCGAGATGCTCGGGCCCTAG
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