mRNA_P-wetherbeei_contig15621.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15621.1.1
Unique NamemRNA_P-wetherbeei_contig15621.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15621.1.1 vs. uniprot
Match: A0A6S7JYZ8_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JYZ8_PARCT)

HSP 1 Score: 79.7 bits (195), Expect = 7.820e-14
Identity = 38/109 (34.86%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:  333 SYASGSSLTPDTIKLRMRVVQVFAECGTPLHRVPYFRPLLEELSGLRLTDVSELRCMVPNLLKIEENRLPEELAGKKVAIVVDGTTRTHEVFAVVARFMDGDGRVQQRL 659
            ++  G +L+ +T   R++VV  F + G  ++++  FR +LEE S  +LTD + +  ++P + + E+    EEL G++++IV DGTTR  E   ++ RF+D + ++QQRL
Sbjct:  112 NHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINCFRSILEE-SAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTRLGEALVIIVRFLDSEWKIQQRL 219
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BLAST of mRNA_P-wetherbeei_contig15621.1.1 vs. uniprot
Match: A0A6S7HVZ4_PARCT (RNA-directed DNA polymerase from transposon BS n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HVZ4_PARCT)

HSP 1 Score: 79.7 bits (195), Expect = 1.300e-13
Identity = 38/109 (34.86%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:  333 SYASGSSLTPDTIKLRMRVVQVFAECGTPLHRVPYFRPLLEELSGLRLTDVSELRCMVPNLLKIEENRLPEELAGKKVAIVVDGTTRTHEVFAVVARFMDGDGRVQQRL 659
            ++  G +L+ +T   R++VV  F + G  ++++  FR +LEE S  +LTD + +  ++P + + E+    EEL G++++IV DGTTR  E   ++ RF+D + ++QQRL
Sbjct:   95 NHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINCFRSILEE-SAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTRLGEALVIIVRFLDSEWKIQQRL 202
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BLAST of mRNA_P-wetherbeei_contig15621.1.1 vs. uniprot
Match: A0A6S7KMY7_PARCT (RNA-directed DNA polymerase from transposon BS (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KMY7_PARCT)

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-13
Identity = 38/109 (34.86%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:  333 SYASGSSLTPDTIKLRMRVVQVFAECGTPLHRVPYFRPLLEELSGLRLTDVSELRCMVPNLLKIEENRLPEELAGKKVAIVVDGTTRTHEVFAVVARFMDGDGRVQQRL 659
            ++  G +L+ +T   R++VV  F + G  ++++  FR +LEE S  +LTD + +  ++P + + E+    EEL G++++IV DGTTR  E   ++ RF+D + ++QQRL
Sbjct:   46 NHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINCFRSILEE-SAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTRLGEALVIIVRFLDSEWKIQQRL 153
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BLAST of mRNA_P-wetherbeei_contig15621.1.1 vs. uniprot
Match: A0A6S7G7N1_PARCT (RNA-directed DNA polymerase from transposon BS n=6 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G7N1_PARCT)

HSP 1 Score: 79.7 bits (195), Expect = 1.610e-13
Identity = 38/109 (34.86%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:  333 SYASGSSLTPDTIKLRMRVVQVFAECGTPLHRVPYFRPLLEELSGLRLTDVSELRCMVPNLLKIEENRLPEELAGKKVAIVVDGTTRTHEVFAVVARFMDGDGRVQQRL 659
            ++  G +L+ +T   R++VV  F + G  ++++  FR +LEE S  +LTD + +  ++P + + E+    EEL G++++IV DGTTR  E   ++ RF+D + ++QQRL
Sbjct:  112 NHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINCFRSILEE-SAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTRLGEALVIIVRFLDSEWKIQQRL 219
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BLAST of mRNA_P-wetherbeei_contig15621.1.1 vs. uniprot
Match: A0A2B4RQL6_STYPI (Protein sidekick-2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQL6_STYPI)

HSP 1 Score: 61.6 bits (148), Expect = 2.780e-7
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 3 
Query:  345 GSSLTPDTIKLRMRVVQVFAECGTPLHRVPYFRPLLEELSGLRLTDVSELRCMVPNLLKIEENRLPEELAGKKVAIVVDGTTRTHEVFAVVARFMDGDGRVQQRL 659
            G SL+       ++VV+ F + G PLH++  FR LLEE     LT    L   +  + K E  ++ EE+ G+ V+I+ DGTT   +   ++ RF+  + +V Q+L
Sbjct: 1790 GESLSVALRVYTVKVVRSFMKAGVPLHKIDCFRELLEE-EAFSLTSSRHLSDFIDVIAKDERKKVKEEIEGRDVSIIFDGTTHVAKALNIILRFVT-EWKVHQQL 1892
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15621.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6S7JYZ8_PARCT7.820e-1434.86Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7HVZ4_PARCT1.300e-1334.86RNA-directed DNA polymerase from transposon BS n=1... [more]
A0A6S7KMY7_PARCT1.400e-1334.86RNA-directed DNA polymerase from transposon BS (Fr... [more]
A0A6S7G7N1_PARCT1.610e-1334.86RNA-directed DNA polymerase from transposon BS n=6... [more]
A0A2B4RQL6_STYPI2.780e-733.33Protein sidekick-2 n=1 Tax=Stylophora pistillata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15621contigP-wetherbeei_contig15621:112..1013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size708
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.3072588-UTR-P-wetherbeei_contig15621:111..1511683186062.3072588-UTR-P-wetherbeei_contig15621:111..151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15621 112..151 -
1683186062.3167408-UTR-P-wetherbeei_contig15621:345..4121683186062.3167408-UTR-P-wetherbeei_contig15621:345..412Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15621 346..412 -
1683186062.336183-UTR-P-wetherbeei_contig15621:775..10131683186062.336183-UTR-P-wetherbeei_contig15621:775..1013Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15621 776..1013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.3255436-CDS-P-wetherbeei_contig15621:412..7751683186062.3255436-CDS-P-wetherbeei_contig15621:412..775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15621 413..775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15621.1.1prot_P-wetherbeei_contig15621.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15621 413..775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15621.1.1

>prot_P-wetherbeei_contig15621.1.1 ID=prot_P-wetherbeei_contig15621.1.1|Name=mRNA_P-wetherbeei_contig15621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MDKRKVQKSNRTLKEAANEMLNKHMLELKKQLVCIWLVTDARHHQAADAR
RAGLRGVRDAASPGALLPAALRRALGAAADRRLRAALHGPEPAQDRRESA
SRGAGRQKGCHRRRRHNKNT*
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mRNA from alignment at P-wetherbeei_contig15621:112..1013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15621.1.1 ID=mRNA_P-wetherbeei_contig15621.1.1|Name=mRNA_P-wetherbeei_contig15621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=902bp|location=Sequence derived from alignment at P-wetherbeei_contig15621:112..1013- (Phaeothamnion wetherbeei SAG_119_79)
CGATGCCAGCTCCGCCGCCGGTTCGAGAGCAAAGCCTCCAGCGGGGGTGC
GCGCCGCCGATCGAAGTGCCAAGCCCAAGATACTGTCGTCGTAGGGGTCC
ATTAAATCCCTGCTAAAGGACAAGAAGCTCCAAGACGAGGGCCTTCATCC
CGATGCCGCGAACAAGGGCAGAGTCCACTGTACATTTTGCAAGGGCAGCG
TGCAAGGCACTAAGCAAGAGGTGAAATAACATATCAAGATGGACAAACGC
AAGGTGCAAAAGAGCAATCGTACTCTCAAGGAGGCGGCGAACGAGATGCT
AAACAAGCACATGCTGGAGCTGAAGAAGCAGCTCGTATGCATCTGGCTCG
TCACTGACGCCCGACACCATCAAGCTGCGGATGCGCGTCGTGCAGGTCTT
CGCGGAGTGCGGGACGCCGCTTCACCGGGTGCCCTACTTCCGGCCGCTCT
TAGAAGAGCTCTCGGGGCTGCGGCTGACCGACGTCTCCGAGCTGCGCTGC
ATGGTCCCGAACCTGCTCAAGATCGAAGAGAATCGGCTTCCCGAGGAGCT
GGCCGGCAAAAAGGTTGCCATCGTCGTCGACGGCACAACAAGAACACATG
AGGTCTTTGCGGTTGTTGCGCGCTTCATGGATGGTGACGGCAGAGTGCAG
CAACGGCTCACCGAGCAGGTATGTCTGAGCGACAGCGGCGGGATTTTCGG
CTTTTTCTTGCGCTTTGCCCTTCGTCTTGTTTACAGTTGCTCGTCTTTGC
TATGCCTGTTTTCATGGATCTTTTGGCGTTTTGTTCGTCCTGTGCCCCCC
TTGCTGTTCCTTCTTGCCTGTTCCACCGCCGCCGTTGTGCTGCGGCCTCT
GCTCTGTGCCAGGCCTTCTACAAGGCAGCCTTCATCAGAGAAAAGGAACC
CC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15621:112..1013-

>mRNA_P-wetherbeei_contig15621.1.1 ID=mRNA_P-wetherbeei_contig15621.1.1|Name=mRNA_P-wetherbeei_contig15621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig15621:112..1013- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAAACGCAAGGTGCAAAAGAGCAATCGTACTCTCAAGGAGGCGGC
GAACGAGATGCTAAACAAGCACATGCTGGAGCTGAAGAAGCAGCTCGTAT
GCATCTGGCTCGTCACTGACGCCCGACACCATCAAGCTGCGGATGCGCGT
CGTGCAGGTCTTCGCGGAGTGCGGGACGCCGCTTCACCGGGTGCCCTACT
TCCGGCCGCTCTTAGAAGAGCTCTCGGGGCTGCGGCTGACCGACGTCTCC
GAGCTGCGCTGCATGGTCCCGAACCTGCTCAAGATCGAAGAGAATCGGCT
TCCCGAGGAGCTGGCCGGCAAAAAGGTTGCCATCGTCGTCGACGGCACAA
CAAGAACACATGA
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