mRNA_P-wetherbeei_contig1562.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1562.4.1
Unique NamemRNA_P-wetherbeei_contig1562.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: A0A835YK59_9STRA (Putative DNAdirected RNA polymerase II 36 kDa polypeptide A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK59_9STRA)

HSP 1 Score: 382 bits (982), Expect = 1.290e-129
Identity = 189/314 (60.19%), Postives = 245/314 (78.03%), Query Frame = 3
Query:   87 MPS-RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQITDPKVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            MP+ RAPKIE++EL+ D+V+F LSDTDTSVANALRR MIAEVPTMAIDLVTIT N+S LQDEFLAHRLGL+PL+  +P  KF+YN DC+CED+C++CSV  SLDVS+     +   +H+KD PV VT+ +L S DPRV P+HF++SD ++   + GIM+AKL++GQR+ LTAVAKKG+AKEHAKWSPV VATY+FDP++++ +DV   L   Q+Q+ VE CP KVY LD RT N  V++  EC+YCD+C  +AS+ K RPEDD VVTV    D F+F VETNG++ A+ VV  AL+ LS KLQ LRNE+++++Q
Sbjct:    1 MPNTRAPKIEVLELKADFVKFVLSDTDTSVANALRRVMIAEVPTMAIDLVTITENSSALQDEFLAHRLGLVPLRC-EPGTKFVYNLDCDCEDNCEQCSVTLSLDVSWESKA-AGRPDHEKDLPVFVTSSDLVSHDPRVGPVHFASSDIIDASQDDGIMLAKLSRGQRLQLTAVAKKGIAKEHAKWSPVCVATYQFDPIIKVADDVSATLTVAQRQQVVESCPVKVYGLDERTNNIVVRNRLECMYCDECTNVASSLKLRPEDDAVVTVTASQDRFIFSVETNGTIDADQVVQQALEALSLKLQTLRNELINVKQ 312          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: A0A8K1CE06_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE06_PYTOL)

HSP 1 Score: 317 bits (811), Expect = 1.110e-103
Identity = 156/321 (48.60%), Postives = 222/321 (69.16%), Query Frame = 3
Query:   87 MPS-RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPL----QITDPKVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQT*H 1034
            MP+ R PKIE++ELRDD+++F LS+TD SVANA+RR MIAEVPT+AIDLVTI  NTSV+ DEFLAHRLG+IPL     + + + +F+Y+ DC+C++HC  CSVEF+LDV  +  +            + VT+++L+S+DP + P+HFS+ +      + G++IAKL  GQRI L+A+AK G+ KEHAKWSPVAVAT+ ++P++ +N+ VM  L+  QK E  + CP +VY  D       V DA  C+YCD+CV +A++FK  PEDD  +T+R R+D F+F VET G +  E VV  AL ++ EKL +L+++ + L    H
Sbjct:    1 MPNPRFPKIEVVELRDDFIKFELSETDASVANAIRRVMIAEVPTLAIDLVTIEANTSVMTDEFLAHRLGMIPLFFDGGLENFRQRFVYSQDCDCDEHCPNCSVEFTLDVVADQGV------------LTVTSESLRSTDPYIRPMHFSSEEEFSNTQDTGVIIAKLGPGQRIKLSAIAKLGIGKEHAKWSPVAVATFMYEPIITLNQAVMNTLSSDQKAELYKSCPAEVYDTDENYDQLTVGDAMRCMYCDECVKVANSFKDNPEDDAALTIRMREDKFIFSVETCGQLRPEEVVICALDIIREKLSSLKHQCLELSHDDH 309          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: W4FWZ6_9STRA (RPOLD domain-containing protein n=8 Tax=Aphanomyces TaxID=100860 RepID=W4FWZ6_9STRA)

HSP 1 Score: 309 bits (792), Expect = 8.850e-101
Identity = 154/318 (48.43%), Postives = 215/318 (67.61%), Query Frame = 3
Query:   87 MPS-RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQITDP----KVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            MP+ R PKI++ E+RDD+++F LS+TDTSVANA+RR MIAEVPT+AIDLV+I  NTSV+ DEFLAHRLG+IPL++       K +F+Y+ DC+C++HC  CSVEF LDV       S  Q         VT+ +L+S DP + P+HFS+ +      + G++IAKL  GQR+ L A+AK G+ KEHAKWSPVAVATY F+P++ +N++V+      Q+ E  + CPT+V+ +D       V+D   C+YCD+CV LAS+++  PEDD  VTV    D F+F VET G +  E VV  AL ++ +KL AL+++ + L Q
Sbjct:    1 MPNTRFPKIDLQEIRDDFIKFELSETDTSVANAIRRVMIAEVPTLAIDLVSIEVNTSVITDEFLAHRLGMIPLRLEGGLEAFKKRFVYSADCDCDEHCPNCSVEFELDVRAE----SGTQT--------VTSDSLRSLDPYIKPVHFSSEEEANNTQDTGVIIAKLGPGQRLKLNAIAKLGIGKEHAKWSPVAVATYMFEPIITLNQNVLNTYTSEQRVELYKSCPTRVFEIDDTYDTLQVEDNMRCMYCDECVKLASSYRENPEDDMAVTVTATQDKFIFSVETTGQLKPEEVVIWALDIIKDKLAALKHQCLELSQ 306          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: A0A7S2Y381_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y381_9STRA)

HSP 1 Score: 309 bits (792), Expect = 1.550e-100
Identity = 153/312 (49.04%), Postives = 215/312 (68.91%), Query Frame = 3
Query:   93 SRAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQITDPKV-KFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            +R PK+++ ELRDD + F LSDTD SVANALRR MIAE PT+AIDLVTI TNTSV+QDEFLAHRLGLIP++     V KF +N+DC+CED+C +C+V FSLDVS+ D   +   +H+ D P+ VT+Q+L S++P V  +HF+++D  +   + GI + KLA+GQ I LTA+AK G  KEH+KW    VATY++DP++++NE+ +  L+  Q  +  E CP  V+ +D +TG   V +  +C+YC++C  L    K R EDDP + +    + FLF VETNG++ AE VV  AL VL  KL+ L+   M +++
Sbjct:    5 TRFPKVKVQELRDDCIRFELSDTDISVANALRRVMIAETPTLAIDLVTIETNTSVMQDEFLAHRLGLIPIRYHRGDVSKFRFNYDCDCEDYCHQCAVLFSLDVSF-DQRAAMRPDHESDLPLTVTSQDLVSNNPDVQAVHFASADEQQQSQDAGIALLKLARGQAIKLTAIAKLGTQKEHSKWCTCCVATYQYDPIIKLNEEKLDQLSSEQVDQLAESCPVGVFEVDEKTGKLTVVNRMDCMYCEECTRLGDTMKARSEDDPFIDIHADTNVFLFTVETNGALLAEEVVLSALTVLGAKLRDLQMACMEIKE 315          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: K3W7V5_GLOUD (RPOLD domain-containing protein n=21 Tax=Oomycota TaxID=4762 RepID=K3W7V5_GLOUD)

HSP 1 Score: 306 bits (785), Expect = 9.800e-100
Identity = 153/318 (48.11%), Postives = 217/318 (68.24%), Query Frame = 3
Query:   87 MPS-RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQ----ITDPKVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            MP+ R PKIEI ELRDD+++F LS+TD SVANA+RR MI+EVPT+AIDLV+I  NTSV+ DEFLAHRLG+IPL     + + + +F+Y+ DC+C++HC  CSVEF LDV  +  +            + VT++ LKS DP + P++FS+ + +    + G++IAKL  GQR+ L+A+AK G+ KEHAKWSPVAVAT+ ++P++ +N+ V+      QK E  + CPT+VY  D       V D+  C+YCD+CV +A +FK  PEDD  V+VR R+D F+F VET G +  E VV  AL ++ EKL +L+++ + L Q
Sbjct:    1 MPNPRFPKIEIQELRDDFIKFELSETDASVANAIRRVMISEVPTLAIDLVSIEVNTSVMTDEFLAHRLGMIPLYFDGGLENFRQRFVYSQDCDCDEHCPNCSVEFQLDVRADQGV------------MTVTSEALKSLDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATFMYEPIITLNQAVLATYTPEQKAELYKSCPTEVYETDENYDQFTVGDSMRCMYCDECVKVADSFKDNPEDDAAVSVRMREDKFIFSVETTGQLRPEEVVICALDLIREKLSSLKHQCLELSQ 306          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: A0A067CJB5_SAPPC (RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJB5_SAPPC)

HSP 1 Score: 305 bits (780), Expect = 5.780e-99
Identity = 151/314 (48.09%), Postives = 209/314 (66.56%), Query Frame = 3
Query:   96 RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQITDP----KVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            R PKI+I ELRDD+++F LS+TDTSVAN++RR MIAEVPT+AIDLV+I  NTSV+ DEFLAHRLG+IPL         K +F+Y+ DC+C++HC  CSVEF LDV     + +            VT+Q+L+S DP V P+HFS+ + +    + G++IAKL  GQR+ L A+AK G+ KEHAKWSPVAVATY F+P++ +N+ V+      Q+ E  + CPT+V+ +D       V+D   C+YCD+CV LA ++   PEDD  VTV    D F+F VET G +  E VV  AL ++ +KL +L+++ + L Q
Sbjct:    5 RFPKIDIQELRDDFIKFELSETDTSVANSIRRVMIAEVPTLAIDLVSIEINTSVITDEFLAHRLGMIPLAFDGGLEGFKKRFVYSADCDCDEHCPHCSVEFELDVRAESGMQT------------VTSQSLRSLDPYVHPVHFSSEEELNNTQDSGVIIAKLGPGQRLKLNALAKLGIGKEHAKWSPVAVATYMFEPIITLNQKVLSTYTNEQRVELYKSCPTRVFEIDDTYDQIQVEDHMRCMYCDECVKLAESYLENPEDDAAVTVTMTPDKFIFSVETTGQLKPEEVVICALDIIKDKLSSLKHQCLELSQ 306          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: A0A484DTY5_BRELC (RPOLD domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTY5_BRELC)

HSP 1 Score: 311 bits (797), Expect = 2.340e-98
Identity = 156/322 (48.45%), Postives = 220/322 (68.32%), Query Frame = 3
Query:   75 YIAAMPS-RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQ----ITDPKVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            ++  MP  R PKIEI ELRDD++ F LS+TD SVANA+RR MIAEVPT+AIDLV+I  NTSV+ DEFLAHRLG+IPL     + + + +F+Y+ DC+C+++C  CSVEFSLDV+ +  + S            VT++ LKSSDP + P++FS+ + +    + G++IAKL  GQR+ L+A+AK G+ KEHAKWSPVAVATY +DP++ +N+ V+ +    QK E  + CPT+V+  D       V D   C+YCD+CV LA +FK  PEDD  V+++ R+D F+F VET G +  E VV  AL ++ EKL +L+++ + L Q
Sbjct:  241 WVITMPHPRFPKIEIQELRDDFIRFELSETDPSVANAIRRVMIAEVPTLAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGGLENFRQRFVYSQDCDCDENCPNCSVEFSLDVTADSGVLS------------VTSEALKSSDPYIRPVNFSSEEELNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATYMYDPIITLNQAVLSSYTPEQKAELYKSCPTEVFETDENYEQLTVGDPMRCMYCDECVKLADSFKDNPEDDSAVSIKMREDKFIFSVETTGQLKPEEVVICALDLIREKLSSLKHQCLELSQ 550          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: D7FHB9_ECTSI (RPOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.220e-96
Identity = 153/247 (61.94%), Postives = 192/247 (77.73%), Query Frame = 3
Query:   87 MPS-RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQITDPKVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHV--EFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVY 818
            MP+ RAP++EI++LR+D+VEF LS+TDTSVANALRR MIAEVPTMAIDLVTI  N+SVLQDEFL+HRLGLIPL   DP V++ YN+DC+CED+C +CS  F+LDVS+ D       EH +D+PVHVT+ +L SSDPR+  +HF+ SD    +   + GI+IAKLAKGQR+ LTAVAKKG+AKEHAKWSPVAVATYKF+PV+EINE+    L   QK EFVE CP KVY  D ++G  +V+    C++
Sbjct:    1 MPNLRAPQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLA-ADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSW-DKKALGRPEHMQDQPVHVTSADLVSSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFVEHRDMCMW 245          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: A0A2P4YFS8_9STRA (DNA-directed RNA polymerase II n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YFS8_9STRA)

HSP 1 Score: 317 bits (812), Expect = 1.530e-95
Identity = 159/325 (48.92%), Postives = 224/325 (68.92%), Query Frame = 3
Query:   66 FTPYIAAMPS-RAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPL----QITDPKVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            F P    MP  R PKIEI ELRDD++ F LS+TD SVANA+RR MI+EVPT+AIDLV+I  NTSV+ DEFLAHRLG+IPL    ++ + + +F+Y+ DC+C+++C  CSVEFSLDV+ ++ + S            VT++ LKSSDP + P++FS+ + +    + G++IAKL  GQR+ L+A+AK G+ KEHAKWSPVAVAT+ +DP++ +N+ V+   +  QK E  +CCPT+V+  D       V DA  C+YCD+CV LA +FK  PEDD  V++R R+D F+F VET G +  E VV  AL ++ EKL +L+++ + L Q
Sbjct:  828 FPPESFVMPHPRFPKIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGRLENFRQRFVYSQDCDCDENCPNCSVEFSLDVTADNGVLS------------VTSEALKSSDPYIRPVNFSSEEELNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATFMYDPIITLNQAVLSTYSPEQKAELYKCCPTEVFETDENYEQFTVGDAMRCMYCDECVKLADSFKDNPEDDSAVSIRMREDKFIFSVETTGQLKPEEVVICALDLIREKLSSLKHQCLELSQ 1140          
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Match: A0A024G378_9STRA (RPOLD domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024G378_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.310e-94
Identity = 147/312 (47.12%), Postives = 205/312 (65.71%), Query Frame = 3
Query:  102 PKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVTITTNTSVLQDEFLAHRLGLIPLQITDP----KVKFLYNHDCECEDHCQRCSVEFSLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEFQTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEINEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVLLASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEKLQALRNEVMHLRQ 1025
            PK+EI++LRDD+++F L +TD SVANALRR MIAEVPT+AIDLVTI  NTSV+ DEFLAHRLG+IPL         + +F+Y+ DC+CE+HC  CSVEF LDV     + S            VT+  LKS DP + P++FS+ +      + G++IAKL  GQ I L+A+AK G+ KEHAKWSPVAVAT+ ++P + +N+ ++      QK E  + CPT+VY  D       + +   C+YCD+CV +A+++K  PEDD  VTV+ ++D F+F VET G +  E VV  AL ++ EKL  L+++ + L Q
Sbjct:    7 PKVEILDLRDDFIKFELFETDASVANALRRVMIAEVPTLAIDLVTIEINTSVMTDEFLAHRLGMIPLFFDGGLEAFRQRFVYSQDCDCEEHCPNCSVEFQLDVRAEQGMLS------------VTSDALKSVDPYIRPVNFSSEEEFNNTQDTGVIIAKLGPGQHIRLSAIAKLGIGKEHAKWSPVAVATFMYEPKITLNQAILSTYTPEQKAELYKSCPTEVYETDENYEQFTIANHMRCMYCDECVKVANSYKDNPEDDAAVTVQMQEDKFIFSVETTGQLKPEEVVICALDMIREKLSYLKHQCLELSQ 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1562.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK59_9STRA1.290e-12960.19Putative DNAdirected RNA polymerase II 36 kDa poly... [more]
A0A8K1CE06_PYTOL1.110e-10348.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FWZ6_9STRA8.850e-10148.43RPOLD domain-containing protein n=8 Tax=Aphanomyce... [more]
A0A7S2Y381_9STRA1.550e-10049.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3W7V5_GLOUD9.800e-10048.11RPOLD domain-containing protein n=21 Tax=Oomycota ... [more]
A0A067CJB5_SAPPC5.780e-9948.09RNA polymerase Rpb3/Rpb11 dimeriZation domain-cont... [more]
A0A484DTY5_BRELC2.340e-9848.45RPOLD domain-containing protein n=1 Tax=Bremia lac... [more]
D7FHB9_ECTSI1.220e-9661.94RPOLD domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2P4YFS8_9STRA1.530e-9548.92DNA-directed RNA polymerase II n=1 Tax=Phytophthor... [more]
A0A024G378_9STRA1.310e-9447.12RPOLD domain-containing protein n=2 Tax=Albugo Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1562contigP-wetherbeei_contig1562:2820..4484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo137231
PFAMsRNA_pol_A_bac,RNA_pol_L
Model size1078
Max annot lvl4776|Peronosporales
KEGG rclassRC02795
KEGG koko:K03011
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.98e-104
EggNOG OGsCOG0202@1|root,KOG1522@2759|Eukaryota,3Q855@4776|Peronosporales
Ec32 ortholog descriptionDNA-directed RNA polymerase, RBP11-like dimerisation domain
Ec32 orthologEc-03_004030.1
DescriptionRNA polymerases D
Cds size945
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.1786318-UTR-P-wetherbeei_contig1562:2819..28661683186062.1786318-UTR-P-wetherbeei_contig1562:2819..2866Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1562 2820..2866 -
1683186062.2264705-UTR-P-wetherbeei_contig1562:4398..44841683186062.2264705-UTR-P-wetherbeei_contig1562:4398..4484Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1562 4399..4484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.1913881-CDS-P-wetherbeei_contig1562:2866..31421683186062.1913881-CDS-P-wetherbeei_contig1562:2866..3142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1562 2867..3142 -
1683186062.200405-CDS-P-wetherbeei_contig1562:3619..42861683186062.200405-CDS-P-wetherbeei_contig1562:3619..4286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1562 3620..4286 -
1683186062.2094767-CDS-P-wetherbeei_contig1562:4396..43981683186062.2094767-CDS-P-wetherbeei_contig1562:4396..4398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1562 4397..4398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1562.4.1prot_P-wetherbeei_contig1562.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1562 2867..4398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1562.4.1

>prot_P-wetherbeei_contig1562.4.1 ID=prot_P-wetherbeei_contig1562.4.1|Name=mRNA_P-wetherbeei_contig1562.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=315bp
MPSRAPKIEIIELRDDYVEFRLSDTDTSVANALRRAMIAEVPTMAIDLVT
ITTNTSVLQDEFLAHRLGLIPLQITDPKVKFLYNHDCECEDHCQRCSVEF
SLDVSYNDLIGSAAQEHDKDEPVHVTTQNLKSSDPRVAPIHFSASDHVEF
QTEPGIMIAKLAKGQRISLTAVAKKGVAKEHAKWSPVAVATYKFDPVVEI
NEDVMQALNQVQKQEFVECCPTKVYALDPRTGNPYVKDAQECVYCDDCVL
LASAFKRRPEDDPVVTVRPRDDSFLFQVETNGSVTAEAVVADALQVLSEK
LQALRNEVMHLRQT*
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mRNA from alignment at P-wetherbeei_contig1562:2820..4484-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1562.4.1 ID=mRNA_P-wetherbeei_contig1562.4.1|Name=mRNA_P-wetherbeei_contig1562.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1665bp|location=Sequence derived from alignment at P-wetherbeei_contig1562:2820..4484- (Phaeothamnion wetherbeei SAG_119_79)
CCGCTCGCGTGCAAGGGCTCGAGAAACGCGCTCTGTTAAAGGCAGACGTA GCACTATCATCCGCTTTCACTCCATATATCGCAGCCATGTGAGTAGGATA ATTGAGGGAATCCTTGTGGCTCTTTTCACGCCTCCAAAAAGATCTCTCGA AGCATCGCTCAATCCGCTATCCTTGCCTCTCTCCAAGCACAAGCACAGGC CGTCCCGCGCTCCAAAGATTGAAATCATCGAATTGAGAGACGACTACGTC GAGTTCAGACTAAGCGATACGGACACCTCTGTGGCGAATGCGCTGCGGCG AGCGATGATCGCCGAGGTGCCAACCATGGCGATCGATCTGGTCACCATAA CCACCAATACGAGCGTCCTGCAGGACGAGTTTCTCGCGCACCGCCTCGGC CTCATCCCGCTCCAAATCACCGACCCGAAGGTAAAGTTCCTCTACAACCA CGACTGCGAGTGCGAGGACCACTGCCAGCGCTGCAGCGTCGAGTTCTCGC TCGACGTGTCGTACAACGATCTCATCGGGAGCGCGGCCCAGGAGCACGAC AAGGACGAGCCCGTCCATGTCACGACGCAAAACCTTAAGAGCAGCGACCC ACGCGTCGCCCCCATCCACTTCAGCGCCAGTGACCATGTCGAATTTCAGA CGGAGCCGGGGATCATGATCGCCAAGCTGGCGAAGGGGCAGCGGATTTCG CTGACAGCGGTGGCAAAGAAAGGCGTCGCGAAGGAGCACGCCAAGTGGAG CCCCGTCGCCGTGGCCACGTACAAGTTCGACCCCGTGGTGGAGATCAATG AGGACGTCATGCAGGCGCTAAACCAGGTCCAGAAGCAGGAGTTCGTCGAG TGCTGCCCGACAAAGGTGCGCTGAACTTCAATTGTTAGCAGCCAAAATAG CTCTCTCGAGAATGCTACATTTGCGTCCTTCATGGTAGCCTGTTTTGCCT ACACCTACTTCACAGCAGGTTCATATAACGCGATTTCCCTCAAATTTGCG GCCGGCCGGAATTTCTTGCCGTTGGCGTTTTTGCATGTCTGTCTTTGCTT GATGTTTCTGATGCGTCTGCCAGAAGCCTGAGCGTCTTTTTGGCTTCGCT TCATGCGCAGTCTTCGCTGGCAGAAGTTTGCCCATGTCGTTTCCTCATAT CGCTGCCCTGAGACTGGCGAGAGCGAAAAAAGAAACTCGATTTGAGAGGA ATGTCTGCTTCGCCGCAATTTGTTCAAGCATTCTTTTGGCGACTGCTGCT ACACTTTTTGCATCTGCGGCCGTACACCGATCCGTCACCCAACCACTATC TTTGGCTACTTAACCCCAAACCCCCAAAAAAACATCTTTCAGGTGTACGC GCTTGACCCAAGGACAGGGAACCCGTACGTGAAGGACGCCCAGGAGTGCG TCTACTGCGACGACTGCGTGCTGCTGGCGTCGGCCTTCAAGCGGCGTCCG GAGGACGATCCGGTGGTGACAGTGCGGCCCCGCGATGACTCCTTCCTCTT CCAGGTGGAAACCAACGGGTCAGTCACGGCCGAGGCCGTCGTGGCCGACG CGCTGCAGGTGCTCTCGGAGAAGCTGCAAGCGCTGCGGAATGAGGTCATG CACCTGAGGCAAACATAGCACCTAAAGGTATATCGAGAAAAATAAATTGA GAGCATCCACACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1562:2820..4484-

>mRNA_P-wetherbeei_contig1562.4.1 ID=mRNA_P-wetherbeei_contig1562.4.1|Name=mRNA_P-wetherbeei_contig1562.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig1562:2820..4484- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCCCGCGCTCCAAAGATTGAAATCATCGAATTGAGAGACGACTA
CGTCGAGTTCAGACTAAGCGATACGGACACCTCTGTGGCGAATGCGCTGC
GGCGAGCGATGATCGCCGAGGTGCCAACCATGGCGATCGATCTGGTCACC
ATAACCACCAATACGAGCGTCCTGCAGGACGAGTTTCTCGCGCACCGCCT
CGGCCTCATCCCGCTCCAAATCACCGACCCGAAGGTAAAGTTCCTCTACA
ACCACGACTGCGAGTGCGAGGACCACTGCCAGCGCTGCAGCGTCGAGTTC
TCGCTCGACGTGTCGTACAACGATCTCATCGGGAGCGCGGCCCAGGAGCA
CGACAAGGACGAGCCCGTCCATGTCACGACGCAAAACCTTAAGAGCAGCG
ACCCACGCGTCGCCCCCATCCACTTCAGCGCCAGTGACCATGTCGAATTT
CAGACGGAGCCGGGGATCATGATCGCCAAGCTGGCGAAGGGGCAGCGGAT
TTCGCTGACAGCGGTGGCAAAGAAAGGCGTCGCGAAGGAGCACGCCAAGT
GGAGCCCCGTCGCCGTGGCCACGTACAAGTTCGACCCCGTGGTGGAGATC
AATGAGGACGTCATGCAGGCGCTAAACCAGGTCCAGAAGCAGGAGTTCGT
CGAGTGCTGCCCGACAAAGGTGTACGCGCTTGACCCAAGGACAGGGAACC
CGTACGTGAAGGACGCCCAGGAGTGCGTCTACTGCGACGACTGCGTGCTG
CTGGCGTCGGCCTTCAAGCGGCGTCCGGAGGACGATCCGGTGGTGACAGT
GCGGCCCCGCGATGACTCCTTCCTCTTCCAGGTGGAAACCAACGGGTCAG
TCACGGCCGAGGCCGTCGTGGCCGACGCGCTGCAGGTGCTCTCGGAGAAG
CTGCAAGCGCTGCGGAATGAGGTCATGCACCTGAGGCAAACATAG
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