mRNA_P-wetherbeei_contig15619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15619.1.1
Unique NamemRNA_P-wetherbeei_contig15619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15619.1.1 vs. uniprot
Match: A0A835YR94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR94_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.120e-18
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1 
Query: 1162 QKMDDAFLRTVSTVLRRDQSKIKQFQTQTDRFRGGLMGAGAYYTAVESLFGKTNVRAIVEPLVGGL 1359
            +KMDDAF++TVST+LRRDQSKIKQFQT TDRFRGGLM A AYYTAVE+LFG  NV  +++PL+  L
Sbjct:  860 KKMDDAFIKTVSTLLRRDQSKIKQFQTVTDRFRGGLMAAPAYYTAVETLFGPANVSKVLQPLLASL 925
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BLAST of mRNA_P-wetherbeei_contig15619.1.1 vs. uniprot
Match: A0A6H5L7G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.500e-14
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1 
Query: 1153 SRVQKMDDAFLRTVSTVLRRDQSKIKQFQTQTDRFRGGLMGAGAYYTAVESLFGKTNVRAIVEPLVGGL 1359
            SRV+ MDD+FLR VS +LRR+QSKIK+FQ  TDRFRGGL+ A  YY  VE LFG+ NV  I+ PL+  L
Sbjct:  903 SRVKTMDDSFLRKVSVMLRRNQSKIKKFQQLTDRFRGGLIKAPVYYAGVEELFGEDNVEEIIGPLLAAL 971
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BLAST of mRNA_P-wetherbeei_contig15619.1.1 vs. uniprot
Match: D7G5E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 7.860e-14
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query: 1153 SRVQKMDDAFLRTVSTVLRRDQSKIKQFQTQTDRFRGGLMGAGAYYTAVESLFGKTNVRAIVEPLVGGL 1359
            SRV+ MDD+FL+ VS +LRR+QSKIK+FQ  TDRFRGGL+ A  YY  VE LFG+ NV  I+ PL+  L
Sbjct:  782 SRVKTMDDSFLKKVSVMLRRNQSKIKKFQQLTDRFRGGLIKAPVYYAGVEELFGEDNVEEIIGPLLAAL 850
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YR94_9STRA1.120e-1872.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L7G1_9PHAE3.500e-1462.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5E7_ECTSI7.860e-1460.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15619contigP-wetherbeei_contig15619:233..1593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1361
Hectar predicted targeting categoryother localisation
Exons1
Cds size1359
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.0641866-CDS-P-wetherbeei_contig15619:232..15911683186062.0641866-CDS-P-wetherbeei_contig15619:232..1591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15619 233..1591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15619.1.1prot_P-wetherbeei_contig15619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15619 233..1591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15619.1.1

>prot_P-wetherbeei_contig15619.1.1 ID=prot_P-wetherbeei_contig15619.1.1|Name=mRNA_P-wetherbeei_contig15619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=453bp
SAKAAAAPAVAEAPKPAAKAAAEVPKPAAKAVVPPVAEPKASEPAAAIGN
LFGSFFGGLPVAKTPEAKVAPPPPAKVAPPPPPLAAKVAPPPAASTVEAK
PASAKVSEPSAPLGGLLGALFSSPTPASALPPKAAVVPPPKAVVAPPLKA
VVAPLPTPTKATAPAKAGGGFFGMFQEAVYDDDTPSPARSVPPPPPPPAA
RKKDAAPAPSPFGGMFGFGVPATKAPPAPVAPPAPVPPALAVKGPAPAPV
NVFGGLFGGTAPAKPPPPPKAAPAPAPAPAAPALKAPAPGLFDSLFAKPA
PKVVAPPPPPAPAPVVKAPASAGLFSGLFGSAPAPTEPKTALAAPVAKAP
PAKVVSRSGVASRPAPKAAPVAPPAPAAVVATATSRVQKMDDAFLRTVST
VLRRDQSKIKQFQTQTDRFRGGLMGAGAYYTAVESLFGKTNVRAIVEPLV
GGL
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mRNA from alignment at P-wetherbeei_contig15619:233..1593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15619.1.1 ID=mRNA_P-wetherbeei_contig15619.1.1|Name=mRNA_P-wetherbeei_contig15619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1361bp|location=Sequence derived from alignment at P-wetherbeei_contig15619:233..1593+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCAAGGCGGCGGCGGCCCCGGCTGTGGCCGAGGCGCCGAAACCTGC
GGCAAAGGCGGCTGCGGAGGTTCCAAAGCCCGCGGCGAAGGCTGTGGTGC
CGCCTGTGGCAGAGCCGAAGGCGTCGGAGCCTGCGGCTGCTATTGGCAAT
CTGTTTGGTTCGTTTTTCGGAGGGTTGCCTGTGGCTAAAACGCCGGAGGC
GAAGGTGGCGCCGCCACCGCCGGCAAAAGTTGCCCCACCGCCGCCGCCAC
TGGCTGCAAAGGTCGCGCCGCCGCCGGCGGCATCTACGGTTGAGGCCAAG
CCCGCATCTGCCAAGGTGTCTGAGCCGTCCGCGCCCCTTGGAGGCCTTCT
GGGCGCCCTGTTCAGCAGTCCAACCCCGGCGTCGGCCTTGCCACCCAAGG
CCGCCGTAGTGCCGCCGCCGAAGGCCGTCGTCGCGCCCCCGCTTAAGGCC
GTGGTGGCTCCCTTGCCGACGCCCACCAAGGCCACCGCTCCCGCCAAGGC
CGGCGGCGGCTTTTTTGGCATGTTCCAGGAGGCTGTCTACGACGACGACA
CGCCCTCTCCCGCCCGGTCGGTCCCGCCGCCGCCGCCGCCGCCTGCCGCA
CGCAAGAAAGATGCGGCGCCCGCGCCTAGCCCGTTCGGCGGCATGTTTGG
GTTCGGCGTGCCGGCGACGAAGGCTCCTCCCGCCCCCGTGGCGCCGCCGG
CGCCGGTACCGCCGGCGTTGGCCGTGAAGGGGCCCGCTCCGGCACCCGTC
AATGTTTTTGGAGGCCTGTTTGGCGGCACGGCACCCGCCAAGCCGCCGCC
CCCGCCGAAGGCTGCGCCGGCCCCCGCGCCGGCTCCGGCGGCGCCAGCGC
TCAAGGCGCCGGCACCGGGACTGTTTGACAGCTTGTTCGCGAAGCCAGCG
CCAAAGGTGGTGGCGCCGCCCCCGCCTCCGGCGCCGGCACCGGTCGTCAA
GGCGCCTGCTTCGGCGGGGCTCTTCAGCGGCCTCTTCGGATCCGCGCCGG
CTCCGACAGAACCAAAGACGGCGCTGGCGGCACCCGTGGCAAAGGCCCCG
CCGGCGAAGGTGGTTTCCCGGTCCGGCGTCGCGTCACGGCCGGCGCCGAA
GGCGGCACCGGTCGCGCCGCCAGCGCCGGCTGCCGTTGTGGCGACGGCGA
CGTCGCGGGTCCAGAAGATGGATGATGCGTTCCTGCGGACGGTGTCGACA
GTGCTCCGGCGGGACCAAAGCAAGATTAAGCAGTTCCAGACGCAGACCGA
CCGGTTCCGGGGCGGCCTGATGGGCGCCGGGGCGTACTACACGGCAGTGG
AGTCGCTGTTCGGAAAGACGAACGTGCGCGCGATCGTCGAGCCGCTGGTG
GGCGGGCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15619:233..1593+

>mRNA_P-wetherbeei_contig15619.1.1 ID=mRNA_P-wetherbeei_contig15619.1.1|Name=mRNA_P-wetherbeei_contig15619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1359bp|location=Sequence derived from alignment at P-wetherbeei_contig15619:233..1593+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCAAGGCGGCGGCGGCCCCGGCTGTGGCCGAGGCGCCGAAACCTGC
GGCAAAGGCGGCTGCGGAGGTTCCAAAGCCCGCGGCGAAGGCTGTGGTGC
CGCCTGTGGCAGAGCCGAAGGCGTCGGAGCCTGCGGCTGCTATTGGCAAT
CTGTTTGGTTCGTTTTTCGGAGGGTTGCCTGTGGCTAAAACGCCGGAGGC
GAAGGTGGCGCCGCCACCGCCGGCAAAAGTTGCCCCACCGCCGCCGCCAC
TGGCTGCAAAGGTCGCGCCGCCGCCGGCGGCATCTACGGTTGAGGCCAAG
CCCGCATCTGCCAAGGTGTCTGAGCCGTCCGCGCCCCTTGGAGGCCTTCT
GGGCGCCCTGTTCAGCAGTCCAACCCCGGCGTCGGCCTTGCCACCCAAGG
CCGCCGTAGTGCCGCCGCCGAAGGCCGTCGTCGCGCCCCCGCTTAAGGCC
GTGGTGGCTCCCTTGCCGACGCCCACCAAGGCCACCGCTCCCGCCAAGGC
CGGCGGCGGCTTTTTTGGCATGTTCCAGGAGGCTGTCTACGACGACGACA
CGCCCTCTCCCGCCCGGTCGGTCCCGCCGCCGCCGCCGCCGCCTGCCGCA
CGCAAGAAAGATGCGGCGCCCGCGCCTAGCCCGTTCGGCGGCATGTTTGG
GTTCGGCGTGCCGGCGACGAAGGCTCCTCCCGCCCCCGTGGCGCCGCCGG
CGCCGGTACCGCCGGCGTTGGCCGTGAAGGGGCCCGCTCCGGCACCCGTC
AATGTTTTTGGAGGCCTGTTTGGCGGCACGGCACCCGCCAAGCCGCCGCC
CCCGCCGAAGGCTGCGCCGGCCCCCGCGCCGGCTCCGGCGGCGCCAGCGC
TCAAGGCGCCGGCACCGGGACTGTTTGACAGCTTGTTCGCGAAGCCAGCG
CCAAAGGTGGTGGCGCCGCCCCCGCCTCCGGCGCCGGCACCGGTCGTCAA
GGCGCCTGCTTCGGCGGGGCTCTTCAGCGGCCTCTTCGGATCCGCGCCGG
CTCCGACAGAACCAAAGACGGCGCTGGCGGCACCCGTGGCAAAGGCCCCG
CCGGCGAAGGTGGTTTCCCGGTCCGGCGTCGCGTCACGGCCGGCGCCGAA
GGCGGCACCGGTCGCGCCGCCAGCGCCGGCTGCCGTTGTGGCGACGGCGA
CGTCGCGGGTCCAGAAGATGGATGATGCGTTCCTGCGGACGGTGTCGACA
GTGCTCCGGCGGGACCAAAGCAAGATTAAGCAGTTCCAGACGCAGACCGA
CCGGTTCCGGGGCGGCCTGATGGGCGCCGGGGCGTACTACACGGCAGTGG
AGTCGCTGTTCGGAAAGACGAACGTGCGCGCGATCGTCGAGCCGCTGGTG
GGCGGGCTG
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