mRNA_P-wetherbeei_contig1561.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1561.5.1
Unique NamemRNA_P-wetherbeei_contig1561.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: D8LTB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB9_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 3.770e-50
Identity = 84/136 (61.76%), Postives = 105/136 (77.21%), Query Frame = 1
Query:   55 GAPAXXXXXXSAAEVARQQKVPQLIMFMRLANIGLCGLLATTAILELL-LTPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            G P       +AAE+ RQ KVPQL+++MR+ANI LCG+LA TA+L+L+     +   VLACYL AF+C+LCCFETHLKVVAKTIAANFGFLYNAKGRA F++FVG+LCFS  S + +++G  M+VN  FNFYVI K
Sbjct:   31 GLPQQAAAAPTAAELERQAKVPQLMIYMRVANIALCGILAATAVLKLIGAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFK 166          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: A0A836CFZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.650e-45
Identity = 73/112 (65.18%), Postives = 92/112 (82.14%), Query Frame = 1
Query:  124 LIMFMRLANIGLCGLLATTAILELLLTPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            +++  RL N+GLC LL+ TA+LEL+  P+ Q  VLA YLFAFAC+LCCFETH+  +A   A+NFGFLYNAKGRA F+LFVGILCFSFGS+LGYISG+AM+ +  FNF+VI+K
Sbjct:    1 MVILTRLINMGLCVLLSATAVLELIGLPNFQTLVLAVYLFAFACILCCFETHISFIASLAASNFGFLYNAKGRALFLLFVGILCFSFGSILGYISGIAMIADSIFNFFVILK 112          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: A0A7S4EDS9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDS9_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.310e-29
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  106 QQKVPQ----LIMFMRLANIGLCGLLATTAILELLLTPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            +QK+PQ    LI+ MRL N+G+  L+A  AI++LL  P+  +GVL  Y++ FA ++CCFETHL  V++ I  NFGFLYN KGR  F + V  LCFS G ++G ISGV +LV  A+N YVI K
Sbjct:   76 EQKLPQTRSGLIISMRLLNMGVSILMAAAAIIKLLSLPAFTKGVLCLYIWFFALLICCFETHLAQVSRIIGENFGFLYNVKGRVTFFILVSFLCFSIG-LIGLISGVGLLVAAAYNAYVIYK 196          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: W7TT71_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT71_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.640e-27
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  112 KVPQLIMFMRLANIGLCGLLATTAILELLL----TPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            + P L+++MR+AN  LC L++  A+L +++    TP+    VLA Y+ AF+C+LCCFE +L+ VAK IA NFGFLY+AK RA F++FVG+LCFS G + G ++G AM+ N  FN  V+ K
Sbjct:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPA--SWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCK 194          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: A0A482T2R9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2R9_9ARCH)

HSP 1 Score: 104 bits (259), Expect = 3.000e-25
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  178 TAILELLLTPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            T++L +L T S   GVLACY+  F+C+LCCFETHLK V+K IA NFGF+Y+AK R+ FM+F+G + FSF S+ G I G+ ML N  FN + + +
Sbjct:    4 TSLLAVLTTQSATTGVLACYVVVFSCLLCCFETHLKQVSKIIAMNFGFMYSAKSRSLFMIFIGTILFSF-SLFGKIIGLCMLANAGFNLFAVFR 96          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: A0A7S2XJA4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJA4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.100e-18
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   55 GAPAXXXXXXSAAEVARQQK-VPQLIMFMRLANIGLCGLLATTAILELLLTPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            GAP        +A   + +K +PQ+I+FMRLAN+G+   L   +I++++  PS+   +LA Y   F  ++CC ET LK +   IA NFGFL++A  R  F L +  + +++ ++ G I  +A+     FN YV+ +
Sbjct:   27 GAPEPAAAPEPSARALQDEKDLPQVILFMRLANMGIAIALVACSIVKMMSFPSISNWILAVYATLFGLLICCLETQLKFLRVVIAVNFGFLFSAPWRFFFYLLLASITWAYNNLFGKIVAIAIAATALFNTYVLFR 162          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: A0A7S3JYJ7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYJ7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.510e-17
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  112 KVPQLIMFMRLANIGLCGLLATTAILELLL-TPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSV--LGYISGVAMLVNGAFNFYVIVK 459
            K+P+ I+ MR+AN+    LLA  A L+L   T  +  GV++ YLFAFA ++  FE H+  + K IA N GF+Y A GRA+FM+ +G+LCFS   +   GY  G+ ++V    N +++ K
Sbjct:   88 KLPREIVLMRIANLCSAFLLACLAALKLQKNTGDVSSGVISFYLFAFAILIFTFECHVSFLGKVIADNLGFMYQAPGRASFMILLGMLCFSDEPLPGFGYFVGIFVIVTALLNAFIMFK 206          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: A0A4D9D7K6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7K6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.260e-16
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  112 KVPQLIMFMRLANIGLCGLLATTAILELLL----TPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            + P L+++MR+AN  LC L++  A+L +++    TP+    VLA Y+               +VAK IA NFGFLY+AK RA F++FVG+LCFS G + G ++G AM+ N  FN  V+ K
Sbjct:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPA--SWVLAFYV---------------LVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCK 179          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: B8C7D3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7D3_THAPS)

HSP 1 Score: 79.3 bits (194), Expect = 3.160e-15
Identity = 43/125 (34.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   85 SAAEVARQQKVPQLIMFMRLANIGLCGLLATTAILELLLTPSLQQGVLACYLFAFACVLCCFETHLKVVAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            +A + + +  +P++++FMRL N+   GLL   +I  L    SL   VLA Y   F  ++CC E ++  + + IA+NFGFLYN   R  F + +G++ +SFG++LG ++  A++     N YV+ +
Sbjct:   57 TATKESGENNLPKIVLFMRLGNMVAAGLLVFGSIGSLTNIFSLPVMVLAGYGICFGSLICCLEINISFIRQPIASNFGFLYNPFYRLIFYVLMGMVAWSFGTLLGIVASGALMALSLINTYVLCR 181          
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Match: K3WM18_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM18_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 4.550e-10
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  133 FMRLANIGLCGLLATTAILELLLTPSLQQGVLACYLFAFACVLCCFETHLKV--VAKTIAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYVIVK 459
            +MRLAN+    LL  T ++ L   PS    ++  Y+   A  L   E H +   VA+ +  NFGF++ A G+AAF+L +  L FS G+ +G + GV   V   FNF++I +
Sbjct:   51 YMRLANLLCAALLTVTCVIRLFSVPSYAHFLVVIYIMFLAGALVFIENHEQFPSVAEKVKTNFGFMFTAFGKAAFILSISFLAFSQGT-MGVLIGVLFFVLALFNFFLIYR 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1561.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LTB9_ECTSI3.770e-5061.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CFZ2_9STRA5.650e-4565.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4EDS9_9STRA3.310e-2951.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TT71_9STRA1.640e-2749.17Golgi apparatus membrane protein TVP15 n=1 Tax=Nan... [more]
A0A482T2R9_9ARCH3.000e-2553.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2XJA4_9STRA1.100e-1834.56Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3JYJ7_9STRA3.510e-1741.18Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A4D9D7K6_9STRA5.260e-1641.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B8C7D3_THAPS3.160e-1534.40Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K3WM18_GLOUD4.550e-1036.04Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1561contigP-wetherbeei_contig1561:6026..6890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTB9
PFAMsCOPI_assoc
Model size459
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.19e-51
EggNOG OGs28NJZ@1|root,2SB3I@2759|Eukaryota
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-12_005990.1
DescriptionCOPI associated protein
Cds size459
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186061.8787646-CDS-P-wetherbeei_contig1561:6025..62671683186061.8787646-CDS-P-wetherbeei_contig1561:6025..6267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1561 6026..6267 +
1683186061.8894975-CDS-P-wetherbeei_contig1561:6673..68901683186061.8894975-CDS-P-wetherbeei_contig1561:6673..6890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1561 6674..6890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1561.5.1prot_P-wetherbeei_contig1561.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1561 6026..6890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1561.5.1

>prot_P-wetherbeei_contig1561.5.1 ID=prot_P-wetherbeei_contig1561.5.1|Name=mRNA_P-wetherbeei_contig1561.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
PPPPPPANWQQPAAAAAPGAPAQPPAAPSAAEVARQQKVPQLIMFMRLAN
IGLCGLLATTAILELLLTPSLQQGVLACYLFAFACVLCCFETHLKVVAKT
IAANFGFLYNAKGRAAFMLFVGILCFSFGSVLGYISGVAMLVNGAFNFYV
IVK
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mRNA from alignment at P-wetherbeei_contig1561:6026..6890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1561.5.1 ID=mRNA_P-wetherbeei_contig1561.5.1|Name=mRNA_P-wetherbeei_contig1561.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=865bp|location=Sequence derived from alignment at P-wetherbeei_contig1561:6026..6890+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGCCGCCCCCGCCCGCCAACTGGCAACAGCCGGCGGCGGCCGCTGC TCCCGGCGCGCCGGCGCAGCCGCCAGCCGCGCCGAGCGCCGCGGAGGTGG CGCGGCAGCAGAAGGTGCCGCAGCTGATCATGTTTATGCGGCTTGCGAAC ATTGGCCTCTGCGGACTGCTGGCGACGACGGCGATCCTGGAGCTGCTGCT GACGCCAAGCTTGCAGCAGGGTGTACTGGCCTGTTACTTGTTGTGAGTCC TTCCATTTCTCGCGGGGTTTTGCTGCATTGCATGTGTCCTCTGACATCTG TACCTGTTTGTTGTTTGGAGGTTTTATCGTTCGAGCATCGGTCGGGCGTG CTGCATTTTCGCTCGCTCGCTTGTTGTGTGAACTCGTTTCTGCATTACCG TCTACATTAGTCCGTTTGTTTGCCGTGCACGTATTATGCACCATCTCTCA TACGATGCATGGCGTGCTTTTGAGGAAATGATTTTGCGCTGTAAAGCGTT CGGTCACTTGTGTTAGGCATGTTTCGTGTCGTTGAAAATGGCATGGTAGT AGTAAAGGGCTTCCTGCTCTCCCTTCCCCTGCTATCTGCTGCCGGCCCTG CTGCCGGGTTCGGTGAACCGCCGCCGCCCGTTTCTCGGCCCGCCGTAGCG CGTTCGCGTGCGTGCTGTGCTGCTTTGAGACGCACCTGAAGGTGGTGGCG AAGACGATCGCCGCCAACTTCGGCTTCCTCTACAATGCCAAGGGCCGCGC CGCCTTCATGCTCTTTGTCGGCATCCTTTGCTTCTCCTTCGGGAGCGTCC TCGGGTACATCTCCGGGGTTGCGATGCTCGTCAATGGCGCCTTCAACTTC TACGTCATCGTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1561:6026..6890+

>mRNA_P-wetherbeei_contig1561.5.1 ID=mRNA_P-wetherbeei_contig1561.5.1|Name=mRNA_P-wetherbeei_contig1561.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig1561:6026..6890+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGCCGCCCCCGCCCGCCAACTGGCAACAGCCGGCGGCGGCCGCTGC
TCCCGGCGCGCCGGCGCAGCCGCCAGCCGCGCCGAGCGCCGCGGAGGTGG
CGCGGCAGCAGAAGGTGCCGCAGCTGATCATGTTTATGCGGCTTGCGAAC
ATTGGCCTCTGCGGACTGCTGGCGACGACGGCGATCCTGGAGCTGCTGCT
GACGCCAAGCTTGCAGCAGGGTGTACTGGCCTGTTACTTGTTCGCGTTCG
CGTGCGTGCTGTGCTGCTTTGAGACGCACCTGAAGGTGGTGGCGAAGACG
ATCGCCGCCAACTTCGGCTTCCTCTACAATGCCAAGGGCCGCGCCGCCTT
CATGCTCTTTGTCGGCATCCTTTGCTTCTCCTTCGGGAGCGTCCTCGGGT
ACATCTCCGGGGTTGCGATGCTCGTCAATGGCGCCTTCAACTTCTACGTC
ATCGTCAAG
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