mRNA_P-wetherbeei_contig15587.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15587.1.1
Unique NamemRNA_P-wetherbeei_contig15587.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: UPI00093124B8 (GDSL-type esterase/lipase family protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI00093124B8)

HSP 1 Score: 204 bits (518), Expect = 1.200e-63
Identity = 100/130 (76.92%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 VAAFAPQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLRSAAA 390
            VA   P+LVIWQTGVNDAI GVPI+ YK QLR+GIER R LG+DV+LID QFYPRFAKLKNG LY+A+MRDVA    VPV++RFAIM+HLI SAQFT ATLLSPDQFHLND+SYDCLGRLLAQS+R+A A
Sbjct:  103 VAPHTPELVIWQTGVNDAIRGVPIDTYKQQLRTGIERFRKLGADVLLIDHQFYPRFAKLKNGPLYVASMRDVAAEFSVPVVKRFAIMKHLIESAQFTTATLLSPDQFHLNDKSYDCLGRLLAQSIRAAVA 232          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: V5SCY9_9HYPH (GDSL family lipase n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SCY9_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 2.570e-54
Identity = 84/124 (67.74%), Postives = 104/124 (83.87%), Query Frame = 1
Query:   16 PQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLRSAA 387
            PQLV+WQTGVNDA+ GVP++ +K +LR GI ++R  G+DV LIDQQ+YPRF +++NG  Y+AA+R+VA    VPV+QR+ IMQHLI SAQFTAATLL+PDQFHLND SY CLG LLA+SLRSAA
Sbjct:  100 PQLVMWQTGVNDAVRGVPLDRFKTELREGIAKMRGAGADVALIDQQYYPRFQRIENGPAYLAAVREVAKEANVPVVQRYRIMQHLIESAQFTAATLLAPDQFHLNDTSYGCLGHLLARSLRSAA 223          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: A0A109BCD8_HYPSL (Lipolytic enzyme, G-D-S-L family n=4 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BCD8_HYPSL)

HSP 1 Score: 136 bits (343), Expect = 2.060e-37
Identity = 61/126 (48.41%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 VAAFAPQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLR 378
            V A  P LVIWQTGVNDA+ GVP++ ++  + +GIE+++  G D+VL+D Q+YPR  K+ +  LY+A++R +A    +PV++R+AIM+HL++SAQ+T   LL+ D FHL+D  Y CLGR++A++L+
Sbjct:   99 VIARKPTLVIWQTGVNDALRGVPLDKFRATVVAGIEQMQQAGIDIVLLDMQYYPRSEKVSSFPLYLASIRQIAEQRGIPVLRRYAIMKHLVSSAQYTPQQLLAADGFHLSDTGYGCLGRIVAEALQ 224          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: UPI001985281B (SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI001985281B)

HSP 1 Score: 132 bits (333), Expect = 4.030e-36
Identity = 61/126 (48.41%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 VAAFAPQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLR 378
            V A  P LVIWQTGVNDA+  V ++ ++  + +GI+ ++  G D+VL+D Q++P+  K+++   ++ AMR +A   R+P+MQRFAIM+HL+ SAQFT   LL+ DQFH ND SY CLGR++A++L+
Sbjct:   82 VIARQPTLVIWQTGVNDAMRLVNVDKFRETVVAGIDEMQRAGIDIVLLDMQYFPKAEKVRDFPRFLVAMRQIAEQRRIPIMQRFAIMKHLVTSAQFTPQQLLAADQFHPNDLSYGCLGRIMAEALQ 207          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: A0A6I0EGD8_HYPSQ (SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EGD8_HYPSQ)

HSP 1 Score: 132 bits (331), Expect = 3.140e-35
Identity = 60/125 (48.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   16 PQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLRSAAA 390
            P LVIWQTGVNDA+  VP++ ++  + +GI+ L+  G DVVL+D Q++P+  K+++   ++ AMR +A   R+P++QRFAIM+H + SAQ+T   LL+ DQFH ND SY CLGR++A +L    A
Sbjct:  143 PTLVIWQTGVNDALRFVPVDKFRETVVTGIDLLQRAGIDVVLLDMQYFPKAEKVRDFPRFLVAMRQIAEQRRIPILQRFAIMKHFVTSAQYTPQQLLAADQFHPNDLSYRCLGRMMADALEGEVA 267          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: UPI0009301963 (SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009301963)

HSP 1 Score: 128 bits (321), Expect = 2.630e-34
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = 1
Query:   16 PQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLR 378
            P LVIWQTGVNDA+  V +E ++  + +GI+ +R  G DVVL+D Q++PR  K+++   ++ AMR +A    +P++QR+AIM+HL+ SAQ+T   LL+ D FH ND SY CLGR++A +L+
Sbjct:   87 PALVIWQTGVNDALRKVKVEGFRETVLTGIDEMRRAGIDVVLLDMQYFPRAEKVRDFPRFLVAMRQIAEQRDIPILQRYAIMKHLVTSAQYTPQQLLAKDLFHPNDLSYGCLGRMMADALQ 207          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: A0A8J7N3K5_9PROT (SGNH_hydro domain-containing protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N3K5_9PROT)

HSP 1 Score: 127 bits (320), Expect = 3.620e-34
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:   16 PQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSL 375
            P LV+WQTGVNDAI  V IE Y+  L++GI++LRA G DV++I  QFYP+  +++    Y+  M ++A    + + +RF IM+H I S QFTA+ LLSPD FH+ND SY CL  LLA ++
Sbjct:   87 PHLVLWQTGVNDAIRDVGIETYRKTLKAGIDKLRAHGIDVIMIQMQFYPKSERVQGYTDYLRVMHEIAAQEEIALFRRFTIMKHFIKSGQFTASQLLSPDLFHMNDLSYGCLAGLLADAI 206          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: A0A7C4TSL0_9HYPH (SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TSL0_9HYPH)

HSP 1 Score: 129 bits (325), Expect = 4.510e-34
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 VAAFAPQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLRSAAA 390
            V    PQLVIWQTGVNDAI GVP+  ++  L  G++ L++   DV+L+D Q+YPR  ++     Y+ AMR VA    VP++ RFAIM+HLIAS QFT   LL+ D FHLND SY CL  LLA ++    A
Sbjct:  181 VLPLEPQLVIWQTGVNDAIRGVPLPQFEATLGHGVDLLKSRRIDVILLDLQYYPRSEQVPGYLDYVRAMRKVAREKDVPILHRFAIMKHLIASGQFTPPELLAADLFHLNDVSYGCLSTLLADAIEDGLA 310          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: A0A6I3KMH8_9HYPH (SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KMH8_9HYPH)

HSP 1 Score: 127 bits (319), Expect = 1.890e-33
Identity = 58/125 (46.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:   16 PQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLRSAAA 390
            P LVIWQTGVNDA+  V ++ ++  + +G++ L+  G DVVL+D Q++P+  K+++   ++ AMR +A   R+P++QRFAIM++L+ SAQ+T   LL+ DQFH ND SY CLG L+A++L+   A
Sbjct:  143 PTLVIWQTGVNDAMRYVSVDKFRETVIAGVDELQRAGIDVVLLDMQYFPKAEKVRDFPRFLVAMRQIAEQRRIPILQRFAIMKNLVTSAQYTPQQLLAADQFHPNDFSYGCLGSLMAEALQGEVA 267          
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Match: A0A101VNF4_9PROT (SGNH_hydro domain-containing protein n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VNF4_9PROT)

HSP 1 Score: 125 bits (313), Expect = 4.280e-33
Identity = 60/128 (46.88%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 VAAFAPQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQQFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAATLLSPDQFHLNDRSYDCLGRLLAQSLRSA 384
            V A  P LVIWQTGVNDA+  V  + ++  +  G+ ++ ALG DV+L+DQQF+P   K+     Y+  +RD+     VPV +R+ +M HL+ SAQFT   LL+ DQFHLND SYDCLG +LA ++ ++
Sbjct:  111 VLAMNPALVIWQTGVNDALRKVDPDAFRRTVEMGLAQMNALGIDVILLDQQFFPGSVKVAGYQKYLDLIRDIGAAHGVPVFKRYKLMAHLVESAQFTIDELLASDQFHLNDTSYDCLGNVLAGAISAS 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15587.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00093124B81.200e-6376.92GDSL-type esterase/lipase family protein n=1 Tax=H... [more]
V5SCY9_9HYPH2.570e-5467.74GDSL family lipase n=2 Tax=Hyphomicrobium TaxID=81... [more]
A0A109BCD8_HYPSL2.060e-3748.41Lipolytic enzyme, G-D-S-L family n=4 Tax=Hyphomicr... [more]
UPI001985281B4.030e-3648.41SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomi... [more]
A0A6I0EGD8_HYPSQ3.140e-3548.00SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomi... [more]
UPI00093019632.630e-3447.93SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomi... [more]
A0A8J7N3K5_9PROT3.620e-3450.00SGNH_hydro domain-containing protein n=1 Tax=Candi... [more]
A0A7C4TSL0_9HYPH4.510e-3450.77SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomi... [more]
A0A6I3KMH8_9HYPH1.890e-3346.40SGNH/GDSL hydrolase family protein n=1 Tax=Hyphomi... [more]
A0A101VNF4_9PROT4.280e-3346.88SGNH_hydro domain-containing protein n=1 Tax=Alpha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15587contigP-wetherbeei_contig15587:1206..1595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380394.JADL01000004_gene5801
PFAMsLipase_GDSL_2
Model size390
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.16e-26
EggNOG OGsCOG2755@1|root,COG2755@2|Bacteria,1MWPZ@1224|Proteobacteria,2TSYR@28211|Alphaproteobacteria,2JTCG@204441|Rhodospirillales
DescriptionGDSL-like Lipase/Acylhydrolase family
Cds size390
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186061.046901-CDS-P-wetherbeei_contig15587:1205..15951683186061.046901-CDS-P-wetherbeei_contig15587:1205..1595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15587 1206..1595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15587.1.1prot_P-wetherbeei_contig15587.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15587 1206..1595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15587.1.1

>prot_P-wetherbeei_contig15587.1.1 ID=prot_P-wetherbeei_contig15587.1.1|Name=mRNA_P-wetherbeei_contig15587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
VAAFAPQLVIWQTGVNDAIMGVPIEDYKVQLRSGIERLRALGSDVVLIDQ
QFYPRFAKLKNGALYMAAMRDVAGVLRVPVMQRFAIMQHLIASAQFTAAT
LLSPDQFHLNDRSYDCLGRLLAQSLRSAAA
back to top

mRNA from alignment at P-wetherbeei_contig15587:1206..1595-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15587.1.1 ID=mRNA_P-wetherbeei_contig15587.1.1|Name=mRNA_P-wetherbeei_contig15587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig15587:1206..1595- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGGCTTTCGCGCCGCAGCTCGTCATCTGGCAGACCGGGGTCAACGA TGCGATCATGGGCGTGCCGATCGAAGACTACAAGGTGCAGCTGCGCAGCG GCATCGAGCGCCTGCGGGCACTCGGCTCGGATGTGGTGCTCATCGACCAG CAGTTCTACCCGCGCTTCGCCAAGCTCAAGAACGGGGCTCTCTATATGGC CGCCATGCGCGATGTCGCGGGCGTGCTGCGCGTGCCGGTGATGCAGCGCT TCGCCATCATGCAGCATCTGATAGCCAGCGCGCAGTTCACGGCGGCGACG CTGCTTTCGCCCGACCAGTTTCACCTCAACGACCGGTCCTACGACTGCCT CGGCCGCTTGTTGGCGCAGTCGCTGCGCTCGGCCGCGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15587:1206..1595-

>mRNA_P-wetherbeei_contig15587.1.1 ID=mRNA_P-wetherbeei_contig15587.1.1|Name=mRNA_P-wetherbeei_contig15587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig15587:1206..1595- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGGCTTTCGCGCCGCAGCTCGTCATCTGGCAGACCGGGGTCAACGA
TGCGATCATGGGCGTGCCGATCGAAGACTACAAGGTGCAGCTGCGCAGCG
GCATCGAGCGCCTGCGGGCACTCGGCTCGGATGTGGTGCTCATCGACCAG
CAGTTCTACCCGCGCTTCGCCAAGCTCAAGAACGGGGCTCTCTATATGGC
CGCCATGCGCGATGTCGCGGGCGTGCTGCGCGTGCCGGTGATGCAGCGCT
TCGCCATCATGCAGCATCTGATAGCCAGCGCGCAGTTCACGGCGGCGACG
CTGCTTTCGCCCGACCAGTTTCACCTCAACGACCGGTCCTACGACTGCCT
CGGCCGCTTGTTGGCGCAGTCGCTGCGCTCGGCCGCGGCC
back to top