mRNA_P-wetherbeei_contig15578.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15578.1.1
Unique NamemRNA_P-wetherbeei_contig15578.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: A0A7C4TWR4_9HYPH (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TWR4_9HYPH)

HSP 1 Score: 337 bits (864), Expect = 5.130e-115
Identity = 161/227 (70.93%), Postives = 193/227 (85.02%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRSAQLGGA 684
            MA+R++P+ EITPQ+LLRAYACGIFPMAESADDPQLYWIEPQARG+LPLD + +PRRL RT+R+  + V ID+DF+G+I+GCAA RPGRRSTWIN+QIR+LYR+L RQGHCHTVEV  +G L GGLYGVALGG +FGESMFS  RDASKV LV+L +RLI+GGF+LLDTQFVTDHL QFGT+E+DK+EF +RL  A+E  ADF+RLP D S   VL+II  A+  GA
Sbjct:    1 MASRDNPLLEITPQVLLRAYACGIFPMAESADDPQLYWIEPQARGVLPLDGVIVPRRLQRTIRRAAYEVRIDSDFEGIIEGCAASRPGRRSTWINAQIRNLYRELHRQGHCHTVEVWHDGRLAGGLYGVALGGAFFGESMFSNVRDASKVALVYLAARLIYGGFSLLDTQFVTDHLRQFGTIEVDKAEFHARLDAAIEAEADFKRLPLDASARQVLEIIERARAHGA 227          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: V5SBL7_9HYPH (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SBL7_9HYPH)

HSP 1 Score: 325 bits (832), Expect = 3.680e-110
Identity = 158/223 (70.85%), Postives = 183/223 (82.06%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRSAQ 672
            MA+R+  M EITPQ+LL+AY+CGIFPMAESADDP LYWIEPQ RGILPLD + +PRRLA+TVR     VT+DTD++GVI+GCAA R GRRSTWIN +IR LYRDLFR GHCHTVEV  E  LVGGLYGVALGG +FGESMFS ERDASK+ LVHL  RLI GGFT+LDTQFVTDHL QFGT+EID+  F  +L +A++L ADF RLP D SG D+LDII + +
Sbjct:    1 MASRDDIMIEITPQVLLKAYSCGIFPMAESADDPALYWIEPQHRGILPLDDVHVPRRLAKTVRAGAMRVTVDTDYEGVIEGCAAERVGRRSTWINGRIRGLYRDLFRLGHCHTVEVWDEDRLVGGLYGVALGGAFFGESMFSYERDASKIALVHLAGRLIAGGFTMLDTQFVTDHLRQFGTIEIDRDAFHLQLDEALKLSADFMRLPLDTSGQDILDIIAATR 223          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: UPI000931835A (leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000931835A)

HSP 1 Score: 324 bits (830), Expect = 7.410e-110
Identity = 161/227 (70.93%), Postives = 181/227 (79.74%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRSAQLGGA 684
            MA+R+  M EITPQ+LL+AY+CGIFPMAESADDP LYWIEPQ RGILPLD + +P+RLARTVRQ    V IDT+++GVI+GCAA R GRRSTWINS+IR LYRDLFR GHCHTVEV     LVGGLYGVALGG +FGESMFS ERDASK+ LVHL  RLI GGFTLLDTQFVTDHL QFGT+EID+ EF   L  A+ + ADF RLP D SG  +LDII  AQ   A
Sbjct:    1 MASRDDIMIEITPQVLLKAYSCGIFPMAESADDPALYWIEPQHRGILPLDIVHVPKRLARTVRQGALRVAIDTEYEGVIEGCAAERAGRRSTWINSRIRGLYRDLFRLGHCHTVEVWNGDRLVGGLYGVALGGAFFGESMFSYERDASKIALVHLAGRLIAGGFTLLDTQFVTDHLRQFGTLEIDRDEFHRHLDTALGVTADFMRLPLDASGEKILDIIAKAQRAAA 227          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: A0A2W4LG64_9PROT (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4LG64_9PROT)

HSP 1 Score: 318 bits (816), Expect = 9.330e-108
Identity = 150/219 (68.49%), Postives = 184/219 (84.02%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDII 660
            M AR SP+ EITPQ+LL+AY CGIFPMAESADDPQLYWIEPQARG+LPLDA+++P+RL RT+RQ  + + IDTDFDGVI GCAAPRPGRR+TWIN +IR LYR+L + G+CHTVE   +G LVGGLYGVALGG +FGESMFS  RDASK+ L++LC+RLI+GGF LLDTQFVTDHL QFGT+E+D+SEF  +L +A+ +  DF RL +DV+   VL+I+
Sbjct:    1 MTARESPLLEITPQVLLKAYTCGIFPMAESADDPQLYWIEPQARGVLPLDAVRVPKRLQRTIRQQPYVIRIDTDFDGVIAGCAAPRPGRRTTWINDRIRKLYRELHQLGYCHTVEAWHQGRLVGGLYGVALGGAFFGESMFSEMRDASKITLIYLCARLIYGGFVLLDTQFVTDHLRQFGTIEVDRSEFHRQLDEALTIQGDFFRLERDVTPERVLEIM 219          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: A0A1I7NJG3_9HYPH (Leucyl/phenylalanyl-tRNA--protein transferase n=5 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7NJG3_9HYPH)

HSP 1 Score: 317 bits (813), Expect = 4.640e-107
Identity = 158/222 (71.17%), Postives = 181/222 (81.53%), Query Frame = 1
Query:    1 TMAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRS 666
            +MA+R+ PMFEITPQ+LL+AY+CGIFPMAESADDP LYWIEPQ RG+LPLD + IPRRL RTVR   F VT+DTD++ VIDGCAAPR GR STWIN++IRSLYR+LF  G CHTVEV   G LVGGLYGVAL   +FGESMFSTERDASKV LVHL +RLI GGFTLLDTQFVTDHL QFGT+E+D+S FQ +L+ A+E  ADF  L  D SGA+V  I  S
Sbjct:   14 SMASRDDPMFEITPQVLLKAYSCGIFPMAESADDPALYWIEPQQRGVLPLDGLHIPRRLLRTVRTTPFRVTVDTDYERVIDGCAAPRAGRMSTWINTRIRSLYRELFDIGACHTVEVWNGGELVGGLYGVALKSAFFGESMFSTERDASKVALVHLAARLIKGGFTLLDTQFVTDHLRQFGTIELDRSAFQRQLEKALEKNADFYALRPDASGAEVAAIFSS 235          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: UPI00035C74BD (leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00035C74BD)

HSP 1 Score: 315 bits (808), Expect = 1.890e-106
Identity = 155/223 (69.51%), Postives = 179/223 (80.27%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRSAQ 672
            MA+R+  M EITPQ+LL+AY+CGIFPMAESADDP LYWIEPQ RGILPL+A+ +P+RLARTVR     V IDTD++GVI+GCAA R GRRSTWIN +IR LY++LFR GHCHTVEV     LVGGLYGVALGGV+FGESMFS  RDASK+ LVHL  RLI GGFTLLDTQFVTDHL QFGT+E+D+ +F   L DA+   ADF RLP D  GA +LDII  A+
Sbjct:    1 MASRDDIMIEITPQVLLKAYSCGIFPMAESADDPALYWIEPQHRGILPLEAVHVPKRLARTVRSGALRVAIDTDYEGVIEGCAAERAGRRSTWINGRIRGLYQELFRLGHCHTVEVWEGDRLVGGLYGVALGGVFFGESMFSYVRDASKIALVHLAGRLIAGGFTLLDTQFVTDHLRQFGTIEVDRDDFHRLLDDALRQSADFLRLPLDTPGATILDIIERAR 223          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: A0A2W4TWS6_9PROT (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TWS6_9PROT)

HSP 1 Score: 313 bits (801), Expect = 1.790e-105
Identity = 147/223 (65.92%), Postives = 184/223 (82.51%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRSAQ 672
            M AR++P+ EITPQ+LL+AY CGIFPMAESADDPQLYWIEPQARG+LPLD +++P+RL RT+RQ+R+ + IDTDF GVI GCAAP+PGRR+TWIN +IR LYR+L R G+CHTVEV     LVGGLYGVALGG +FGESMFS  RDASK+ L++LC+RLI+GGF LLDTQFVTDHL QFGT+E+D++EF  +L+ A+++  DF RL  + +   VLDI+   Q
Sbjct:    1 MTARDTPLLEITPQVLLKAYTCGIFPMAESADDPQLYWIEPQARGVLPLDQVRVPKRLRRTIRQERYQIRIDTDFAGVIAGCAAPKPGRRTTWINDRIRKLYRELHRLGYCHTVEVWDGERLVGGLYGVALGGAFFGESMFSEVRDASKIALIYLCARLIYGGFVLLDTQFVTDHLRQFGTIEVDRAEFHRQLEAALKINGDFFRLEPEPTAERVLDIVLGNQ 223          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: A0A3S0RB07_HYPSQ (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A3S0RB07_HYPSQ)

HSP 1 Score: 309 bits (792), Expect = 7.250e-104
Identity = 151/222 (68.02%), Postives = 179/222 (80.63%), Query Frame = 1
Query:    1 TMAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRS 666
            +MA+R+ PMFEITPQ+LL+AY+CGIFPMAESADDP LYWIEPQ RG+LPLD + IP+RL RTVR   F V IDTD++GVIDGCAAPR GR STWINS+IR+LYR+LF  G CHTVEV     +VGGLYGVAL   +FGESMFSTERDASK+ LVHL +RLI GGFTLLDTQFVTDHL QFGT+E+D+  FQ  L+ A++  ADF  L +  +GA+V +I  S
Sbjct:   14 SMASRDDPMFEITPQVLLKAYSCGIFPMAESADDPALYWIEPQQRGVLPLDKLHIPKRLLRTVRTTPFEVKIDTDYEGVIDGCAAPRAGRMSTWINSRIRALYRELFELGACHTVEVWSGDEMVGGLYGVALKSAFFGESMFSTERDASKIALVHLAARLIRGGFTLLDTQFVTDHLRQFGTIELDRMAFQRELELALQRDADFYALSRTATGAEVAEIFSS 235          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: A0A2D7FHN5_9HYPH (Leucyl/phenylalanyl-tRNA--protein transferase n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FHN5_9HYPH)

HSP 1 Score: 308 bits (788), Expect = 1.530e-103
Identity = 147/222 (66.22%), Postives = 179/222 (80.63%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEV-RLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDIIRS 666
            MA R++ + EITP++LL+AY+CGIFPMAE+ADDPQL+WIEPQARG+LPLD++ IPRRLART+R+D F + +DTDFDGVI+GCAA RPGR STWIN +IRSLY DLFR GHCHT+E    EG LVGGLYGV LG  +FGESMFS ERDASK+ LV+L +RLIHGGF +LDTQFVTDHL QFG +EI +SEFQ RL  A+    +F  LP       +L+I++S
Sbjct:    1 MATRDNTLLEITPEVLLKAYSCGIFPMAENADDPQLFWIEPQARGLLPLDSISIPRRLARTIRRDPFEIRVDTDFDGVIEGCAASRPGRTSTWINERIRSLYGDLFRMGHCHTIEAWSKEGRLVGGLYGVELGRAFFGESMFSLERDASKIALVYLSARLIHGGFAMLDTQFVTDHLRQFGAIEISQSEFQDRLDVALSCAGNFAALPLSSPPEQILEIVQS 222          
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Match: A0A7C2M4I8_9HYPH (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2M4I8_9HYPH)

HSP 1 Score: 306 bits (783), Expect = 9.780e-103
Identity = 149/219 (68.04%), Postives = 176/219 (80.37%), Query Frame = 1
Query:    4 MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLDAMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRSLYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKVGLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELFADFQRLPQDVSGADVLDII 660
            MA+R+  + EITPQ+LL+AY CGIFPMAESADDP LYWIEPQ RGIL L  + +PRRLARTVRQ RF + IDTDF+GVIDGCAA R GRR+TWIN +IR+LYRDLF  G+CHTVE   +G LVGGLYGVAL G +FGESMFS+ERDASKV L++LC+RLI GGF+LLDTQFVT+HL QFGT+EID++EF   L+ A+   ADF  LP D     VL I+
Sbjct:    1 MASRDDIIIEITPQVLLKAYTCGIFPMAESADDPALYWIEPQQRGILDLSRVHVPRRLARTVRQGRFEIRIDTDFEGVIDGCAASRAGRRTTWINRKIRALYRDLFDAGYCHTVEALAQGRLVGGLYGVALNGAFFGESMFSSERDASKVALIYLCARLIAGGFSLLDTQFVTEHLRQFGTIEIDRAEFHRLLERALAHEADFHALPPDADAERVLAIV 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15578.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TWR4_9HYPH5.130e-11570.93Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
V5SBL7_9HYPH3.680e-11070.85Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
UPI000931835A7.410e-11070.93leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A2W4LG64_9PROT9.330e-10868.49Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A1I7NJG3_9HYPH4.640e-10771.17Leucyl/phenylalanyl-tRNA--protein transferase n=5 ... [more]
UPI00035C74BD1.890e-10669.51leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A2W4TWS6_9PROT1.790e-10565.92Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A3S0RB07_HYPSQ7.250e-10468.02Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A2D7FHN5_9HYPH1.530e-10366.22Leucyl/phenylalanyl-tRNA--protein transferase n=2 ... [more]
A0A7C2M4I8_9HYPH9.780e-10368.04Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15578contigP-wetherbeei_contig15578:732..1445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1267005.KB911255_gene2889
Preferred nameaat
PFAMsLeu_Phe_trans
Model size714
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00055,RC00064
KEGG koko:K00684
KEGG ReactionR03813,R11443,R11444
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0044424,GO:0044464,GO:0140096
Exons1
Evalue4.24e-107
EggNOG OGsCOG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,2U59K@28211|Alphaproteobacteria,3N6V1@45401|Hyphomicrobiaceae
EC2.3.2.6
DescriptionFunctions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
Cds size711
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.7017906-CDS-P-wetherbeei_contig15578:731..14421683186060.7017906-CDS-P-wetherbeei_contig15578:731..1442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15578 732..1442 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.715354-UTR-P-wetherbeei_contig15578:1442..14451683186060.715354-UTR-P-wetherbeei_contig15578:1442..1445Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15578 1443..1445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15578.1.1prot_P-wetherbeei_contig15578.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15578 732..1442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15578.1.1

>prot_P-wetherbeei_contig15578.1.1 ID=prot_P-wetherbeei_contig15578.1.1|Name=mRNA_P-wetherbeei_contig15578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
MAARNSPMFEITPQMLLRAYACGIFPMAESADDPQLYWIEPQARGILPLD
AMQIPRRLARTVRQDRFHVTIDTDFDGVIDGCAAPRPGRRSTWINSQIRS
LYRDLFRQGHCHTVEVRLEGALVGGLYGVALGGVYFGESMFSTERDASKV
GLVHLCSRLIHGGFTLLDTQFVTDHLSQFGTVEIDKSEFQSRLQDAVELF
ADFQRLPQDVSGADVLDIIRSAQLGGADDEDEDEDK*
back to top

mRNA from alignment at P-wetherbeei_contig15578:732..1445-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15578.1.1 ID=mRNA_P-wetherbeei_contig15578.1.1|Name=mRNA_P-wetherbeei_contig15578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig15578:732..1445- (Phaeothamnion wetherbeei SAG_119_79)
ACGATGGCCGCACGCAATTCACCGATGTTCGAGATCACCCCGCAGATGCT TCTGCGGGCTTATGCATGTGGCATTTTTCCGATGGCGGAGAGTGCCGACG ACCCGCAGCTCTACTGGATCGAGCCGCAGGCGCGCGGAATCCTGCCGCTC GATGCCATGCAGATTCCGCGGCGCCTCGCCCGCACTGTCCGCCAAGATCG CTTTCACGTCACCATCGATACCGATTTCGACGGAGTGATCGACGGCTGCG CCGCGCCGCGTCCGGGCCGGCGCTCGACGTGGATCAACAGCCAGATCCGA AGCCTCTATCGCGATCTGTTCAGGCAGGGGCATTGCCACACGGTGGAGGT CCGCCTCGAAGGCGCGCTCGTCGGCGGCCTCTATGGCGTCGCGCTCGGCG GGGTGTATTTCGGCGAGAGCATGTTCTCCACCGAGCGAGACGCGTCCAAG GTCGGCCTCGTCCATCTGTGCTCGCGACTGATCCACGGCGGCTTCACCCT GCTCGATACGCAATTCGTCACCGACCATCTCAGCCAGTTCGGGACCGTCG AGATCGACAAGTCCGAGTTTCAAAGCAGACTGCAGGATGCCGTGGAACTG TTCGCCGATTTCCAGAGGCTGCCGCAGGACGTATCCGGGGCGGACGTTCT CGACATCATCAGGTCGGCCCAGCTTGGCGGCGCTGACGACGAGGACGAGG ACGAGGACAAGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15578:732..1445-

>mRNA_P-wetherbeei_contig15578.1.1 ID=mRNA_P-wetherbeei_contig15578.1.1|Name=mRNA_P-wetherbeei_contig15578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig15578:732..1445- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCACGCAATTCACCGATGTTCGAGATCACCCCGCAGATGCTTCT
GCGGGCTTATGCATGTGGCATTTTTCCGATGGCGGAGAGTGCCGACGACC
CGCAGCTCTACTGGATCGAGCCGCAGGCGCGCGGAATCCTGCCGCTCGAT
GCCATGCAGATTCCGCGGCGCCTCGCCCGCACTGTCCGCCAAGATCGCTT
TCACGTCACCATCGATACCGATTTCGACGGAGTGATCGACGGCTGCGCCG
CGCCGCGTCCGGGCCGGCGCTCGACGTGGATCAACAGCCAGATCCGAAGC
CTCTATCGCGATCTGTTCAGGCAGGGGCATTGCCACACGGTGGAGGTCCG
CCTCGAAGGCGCGCTCGTCGGCGGCCTCTATGGCGTCGCGCTCGGCGGGG
TGTATTTCGGCGAGAGCATGTTCTCCACCGAGCGAGACGCGTCCAAGGTC
GGCCTCGTCCATCTGTGCTCGCGACTGATCCACGGCGGCTTCACCCTGCT
CGATACGCAATTCGTCACCGACCATCTCAGCCAGTTCGGGACCGTCGAGA
TCGACAAGTCCGAGTTTCAAAGCAGACTGCAGGATGCCGTGGAACTGTTC
GCCGATTTCCAGAGGCTGCCGCAGGACGTATCCGGGGCGGACGTTCTCGA
CATCATCAGGTCGGCCCAGCTTGGCGGCGCTGACGACGAGGACGAGGACG
AGGACAAGTAG
back to top