mRNA_P-wetherbeei_contig15570.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15570.2.1
Unique NamemRNA_P-wetherbeei_contig15570.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15570.2.1 vs. uniprot
Match: A0A2R5G683_9STRA (DNA replication complex GINS protein PSF3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G683_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.550e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MADGYFNIEAILQAEERVPCTFQSDAQDMGVLDPTTGEQHLRAGSKA 141
            MA  Y++++AIL  EERVP TF SDAQD+G+LD ++    L  G+KA
Sbjct:    1 MASAYYDLDAILAEEERVPTTFLSDAQDLGILDSSSDNDDLSRGTKA 47
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BLAST of mRNA_P-wetherbeei_contig15570.2.1 vs. uniprot
Match: A0A662XEE6_9STRA (Sld5 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEE6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.470e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   10 GYFNIEAILQAEERVPCTFQSDAQDMGVLDPTTGEQHLRAGS 135
            GYF+I+ IL ++ERV CTF +DAQ  G LD +  E+ L++GS
Sbjct:    2 GYFDIDEILASDERVKCTFATDAQGCGYLDASCTEEDLKSGS 43
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BLAST of mRNA_P-wetherbeei_contig15570.2.1 vs. uniprot
Match: A0A662Y8C0_9STRA (Sld5 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8C0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.930e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 MADGYFNIEAILQAEERVPCTFQSDAQDMGVLDPTTGEQHLRAGS 135
            M+ GYF+I+ IL  +ERV CTF +DAQ  G LD +  E+ L+ GS
Sbjct:    1 MSGGYFDIDEILAGDERVKCTFATDAQGCGYLDASCTEEDLKNGS 45
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BLAST of mRNA_P-wetherbeei_contig15570.2.1 vs. uniprot
Match: A0A8K1FII7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FII7_PYTOL)

HSP 1 Score: 48.5 bits (114), Expect = 2.060e-5
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 MADGYFNIEAILQAEERVPCTFQSDAQDMGVLDPTTGEQHLRAGS 135
            M+ GYF++  IL  +ER+ CTFQ+DA D   LDP+  +  L++G+
Sbjct:    1 MSAGYFDVNDILAGDERIKCTFQTDAIDCAYLDPSCVDDDLKSGA 45
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BLAST of mRNA_P-wetherbeei_contig15570.2.1 vs. uniprot
Match: A0A024GCS2_9STRA (Sld5 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCS2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.450e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   13 YFNIEAILQAEERVPCTFQSDAQDMGVLDPTTGEQHLRAGSK 138
            Y++I  IL  EERV CTF +DAQ+   LDP++ E  ++AGS+
Sbjct:    4 YYDIHEILAGEERVNCTFLTDAQECAYLDPSSLEDDIKAGSE 45
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BLAST of mRNA_P-wetherbeei_contig15570.2.1 vs. uniprot
Match: F0WWF5_9STRA (Uncharacterized protein AlNc14C321G10589 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWF5_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.450e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   13 YFNIEAILQAEERVPCTFQSDAQDMGVLDPTTGEQHLRAGSK 138
            Y++I  IL  EERV CTFQ+DAQ+   LDP++    ++AGS+
Sbjct:    4 YYSIHEILAGEERVNCTFQTDAQECAYLDPSSLGDDIKAGSE 45
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15570.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2R5G683_9STRA3.550e-853.19DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A662XEE6_9STRA2.470e-652.38Sld5 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A662Y8C0_9STRA3.930e-651.11Sld5 domain-containing protein n=2 Tax=Nothophytop... [more]
A0A8K1FII7_PYTOL2.060e-544.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GCS2_9STRA5.450e-550.00Sld5 domain-containing protein n=1 Tax=Albugo cand... [more]
F0WWF5_9STRA5.450e-550.00Uncharacterized protein AlNc14C321G10589 n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15570contigP-wetherbeei_contig15570:946..1086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7D2
Preferred nameGINS3
PFAMsSld5
Model size142
Max annot lvl2759|Eukaryota
KEGG koko:K08869,ko:K10734
KEGG ModuleM00286
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022402,GO:0022616,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071162,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902292,GO:1902315,GO:1902969,GO:1902975,GO:1903047
Exons1
Evalue1.13e-08
EggNOG OGsCOG5138@1|root,KOG1106@2759|Eukaryota
DescriptionDNA replication
Cds size141
COG categoryS
BRITEko00000,ko00002,ko01001,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.5741045-CDS-P-wetherbeei_contig15570:945..10861683186060.5741045-CDS-P-wetherbeei_contig15570:945..1086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15570 946..1086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15570.2.1prot_P-wetherbeei_contig15570.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15570 946..1086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15570.2.1

>prot_P-wetherbeei_contig15570.2.1 ID=prot_P-wetherbeei_contig15570.2.1|Name=mRNA_P-wetherbeei_contig15570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MADGYFNIEAILQAEERVPCTFQSDAQDMGVLDPTTGEQHLRAGSKA
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mRNA from alignment at P-wetherbeei_contig15570:946..1086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15570.2.1 ID=mRNA_P-wetherbeei_contig15570.2.1|Name=mRNA_P-wetherbeei_contig15570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig15570:946..1086+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACGGCTACTTTAACATCGAGGCCATCCTGCAGGCGGAAGAGCG
TGTGCCGTGCACCTTCCAGTCGGACGCGCAAGATATGGGCGTGCTCGATC
CCACCACCGGCGAACAACACCTCCGCGCAGGCTCAAAGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15570:946..1086+

>mRNA_P-wetherbeei_contig15570.2.1 ID=mRNA_P-wetherbeei_contig15570.2.1|Name=mRNA_P-wetherbeei_contig15570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig15570:946..1086+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACGGCTACTTTAACATCGAGGCCATCCTGCAGGCGGAAGAGCG
TGTGCCGTGCACCTTCCAGTCGGACGCGCAAGATATGGGCGTGCTCGATC
CCACCACCGGCGAACAACACCTCCGCGCAGGCTCAAAGGCA
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