mRNA_P-wetherbeei_contig1557.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1557.3.1
Unique NamemRNA_P-wetherbeei_contig1557.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: UPI001966F7D9 (uncharacterized protein LOC120577456 n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI001966F7D9)

HSP 1 Score: 56.2 bits (134), Expect = 7.390e-7
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:    7 VDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPPLAPPPCAGRPSTLRFVSAGE 312
            V+L  KTCSC FW+ +GIPCRHAIAA       T +D  ++ S  ++R+   + +    S   G ++     V C EE LPP A     GRP  +R   A E
Sbjct:  683 VNLAKKTCSCNFWELVGIPCRHAIAAM----SKTSKDPEDYVSDWYSREMYEKCYTHNVSAINGQDM--WSEVEC-EELLPP-AYKKGPGRPKKVRMREADE 776
[Close]
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: A0A396JWJ8_MEDTR (Putative transcription factor interactor and regulator CCHC(Zn) family n=5 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JWJ8_MEDTR)

HSP 1 Score: 54.7 bits (130), Expect = 2.440e-6
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:    7 VDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPPLAPPPCAGRPSTLRFVSAGE 312
            V+L  KTCSC FW+ +GIPCRHAIAA       T +D  ++ S  ++R+   + +    S   G ++     V C EE LPP A     GRP  +R   A E
Sbjct:   68 VNLAKKTCSCNFWELVGIPCRHAIAAM----SKTSKDPEDYVSDWYSREMYEKCYTHNVSAINGQDM--WPEVEC-EELLPP-AYKKGPGRPKKVRRREADE 161
[Close]
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: A0A2Z6NJM2_TRISU (SWIM-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NJM2_TRISU)

HSP 1 Score: 54.3 bits (129), Expect = 3.210e-6
Identity = 41/113 (36.28%), Postives = 52/113 (46.02%), Query Frame = 1 
Query:    7 VDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFST-AFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPPL---APPPCAGRPSTLRFVSAGEGSGGRVS 333
            VDL  ++C+C FWD +GIPCRHAI A        +     W+S   + R Y         S   G ++         E+ LPPL   AP    GRP  LR  SAGE   G+ S
Sbjct:   39 VDLSKRSCTCGFWDLVGIPCRHAITAMSKRNQNPVDFVSGWYSRETYERCYNFN-----VSAINGQDMWPDRPEIEYEDMLPPLYKRAP----GRPKKLRRRSAGEPRPGKWS 142
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BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: D0NSE6_PHYIT (SWIM-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NSE6_PHYIT)

HSP 1 Score: 52.8 bits (125), Expect = 4.110e-6
Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 1 
Query:    4 RVDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPPLAPPPCAGRPSTLRFVSAGE 312
            +++L   TC C + DQ+G+PCRH IAA   E  G   D  + F       Y++  +  AF  ++ + +P+  ++T   E LP +      GRP T R  S GE
Sbjct:   49 QMNLRNGTCKCSYVDQMGMPCRHLIAAL--ESVGNRLDVYKHFQPC----YKVSVYANAFH-AKAVFIPIESDITQSSEWLPAVFTKNL-GRPKTKRIRSVGE 143
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BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: F0VZ86_9STRA (Uncharacterized protein AlNc14C2G227 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZ86_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.710e-6
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    4 RVDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPP 252
            +VDL  K CSC+ ++Q G+PCRH +AA + ++   + +A  +F       Y++ ++   F  ++ +E PL E +  DE  LPP
Sbjct:  537 KVDLAQKYCSCLLFNQHGVPCRHIVAALHWKKA--LGNAYSFFDPC----YRVASYANTFR-NKWLEFPLHEELERDESLLPP 612
[Close]
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: F0X2A8_9STRA (Uncharacterized protein AlNc14C933G12648 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2A8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.600e-6
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:    4 RVDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPPLAPPPCAGRPSTLRFVSAGEGSG 321
            RV++E K CSC++ DQ+GIPC+H IA     +    RD  E   +AF   YQ E F   +   + IELPL + +   +   PP       GR    R +S GE +G
Sbjct:  144 RVNIEEKYCSCMYMDQLGIPCQHFIAVLRFFR----RD--EELYSAFNLCYQFECFAAGYG-GKSIELPLFKELEKRDYHKPPNTTV-LLGRQRERRILSQGENAG 241
[Close]
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: A0A6G0WAD2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAD2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.530e-6
Identity = 37/103 (35.92%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:    4 RVDLEGKTCSCIFWDQIGIPCRHAIAAKY-AEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSR--GIELPLAENVTCDEETLPPLAPPPCAGRPSTLRFVS 303
            RVDL+ K C+C +  Q+G+PCRH IAA    E+   + DA +         Y ++NFL  +      G+EL L E +      LPPL      GR  T R  S
Sbjct:  386 RVDLDLKMCTCSYMQQMGLPCRHFIAALIKCERPHELYDACDTC-------YLVKNFLMGYGYGSQDGVELMLDEKIV-PRNVLPPLKTLNTVGRTKTKRIRS 480
[Close]
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: A0A2Z6M744_TRISU (SWIM-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6M744_TRISU)

HSP 1 Score: 53.1 bits (126), Expect = 8.900e-6
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:    7 VDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPPLAPPPCAGRPSTLRF 297
            V+   KTC+C FW+ +GIPCRHA+ A  + QG   +D L++    ++R+     +  A S   G+++        +E  LPPL      GRP  LR 
Sbjct:  605 VNTAKKTCTCNFWELVGIPCRHAVTA-ISYQG---KDPLDYVDNCYSREKYAACYGFAISAINGVDMWPKPPDGVEENILPPLYKKG-PGRPRKLRI 696
[Close]
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: A0A2Z6PAD1_TRISU (SWIM-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PAD1_TRISU)

HSP 1 Score: 52.8 bits (125), Expect = 1.130e-5
Identity = 40/113 (35.40%), Postives = 51/113 (45.13%), Query Frame = 1 
Query:    7 VDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFST-AFARQYQIENFLKAFSVSRGIELPLAENVTCDEETLPPL---APPPCAGRPSTLRFVSAGEGSGGRVS 333
            VDL  ++C+C FWD +GIPCRHAI A        +     W+S   + R Y         S   G ++         E+ LPPL   AP    GRP  LR  S GE   G+ S
Sbjct:   39 VDLSKRSCTCGFWDLVGIPCRHAITAMGKRNQNPVDFVSGWYSRETYGRCYNFN-----VSAINGQDMWPDRPEIEYEDMLPPLYKIAP----GRPKKLRRRSVGEPRPGKWS 142
[Close]
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Match: A0A6G0WQ42_9STRA (SWIM-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ42_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.150e-5
Identity = 35/101 (34.65%), Postives = 48/101 (47.52%), Query Frame = 1 
Query:    4 RVDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFARQYQIENFLKAFSVSR-GIELPLAENVTCDEETLPPLAPPPCAGRPSTLRFVS 303
            RVDL+ K+C+C +  Q+G+PCRH IAA    +       ++    A    Y + N+L  +     GIEL L E +      LPPL      GR  T R  S
Sbjct:  335 RVDLDAKSCTCPYMRQMGLPCRHYIAALIEYK------RIQELYDACDPCYLVSNYLSGYGCGNSGIELALEETIEA-RSVLPPLRTHNHVGRKKTKRIRS 428
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1557.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
UPI001966F7D97.390e-738.24uncharacterized protein LOC120577456 n=1 Tax=Medic... [more]
A0A396JWJ8_MEDTR2.440e-638.24Putative transcription factor interactor and regul... [more]
A0A2Z6NJM2_TRISU3.210e-636.28SWIM-type domain-containing protein n=1 Tax=Trifol... [more]
D0NSE6_PHYIT4.110e-633.01SWIM-type domain-containing protein n=1 Tax=Phytop... [more]
F0VZ86_9STRA4.710e-633.73Uncharacterized protein AlNc14C2G227 n=1 Tax=Albug... [more]
F0X2A8_9STRA6.600e-636.79Uncharacterized protein AlNc14C933G12648 n=1 Tax=A... [more]
A0A6G0WAD2_9STRA8.530e-635.92Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2Z6M744_TRISU8.900e-634.02SWIM-type domain-containing protein n=1 Tax=Trifol... [more]
A0A2Z6PAD1_TRISU1.130e-535.40SWIM-type domain-containing protein n=1 Tax=Trifol... [more]
A0A6G0WQ42_9STRA1.150e-534.65SWIM-type domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1557contigP-wetherbeei_contig1557:2181..2514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo128371
PFAMsSWIM
Model size336
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.25e-10
EggNOG OGs2EBST@1|root,2SHTE@2759|Eukaryota,3QGB4@4776|Peronosporales
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.4477067-CDS-P-wetherbeei_contig1557:2180..25131683186060.4477067-CDS-P-wetherbeei_contig1557:2180..2513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1557 2181..2513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1557.3.1prot_P-wetherbeei_contig1557.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1557 2181..2513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1557.3.1

>prot_P-wetherbeei_contig1557.3.1 ID=prot_P-wetherbeei_contig1557.3.1|Name=mRNA_P-wetherbeei_contig1557.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
LRVDLEGKTCSCIFWDQIGIPCRHAIAAKYAEQGGTIRDALEWFSTAFAR
QYQIENFLKAFSVSRGIELPLAENVTCDEETLPPLAPPPCAGRPSTLRFV
SAGEGSGGRVS
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mRNA from alignment at P-wetherbeei_contig1557:2181..2514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1557.3.1 ID=mRNA_P-wetherbeei_contig1557.3.1|Name=mRNA_P-wetherbeei_contig1557.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=334bp|location=Sequence derived from alignment at P-wetherbeei_contig1557:2181..2514+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCGGGTCGACCTCGAGGGCAAGACCTGCTCCTGCATCTTCTGGGACCA
GATCGGCATCCCATGCCGCCACGCAATTGCTGCAAAGTACGCGGAGCAAG
GCGGCACCATCAGGGATGCGCTGGAATGGTTCTCCACTGCCTTCGCCCGG
CAGTACCAGATTGAGAACTTCCTGAAGGCCTTCTCCGTCAGCCGCGGCAT
CGAGCTTCCTCTCGCAGAGAATGTTACCTGCGACGAGGAAACGCTTCCGC
CGCTGGCGCCTCCGCCGTGCGCTGGCCGCCCGAGCACTCTCCGATTCGTC
AGTGCCGGGGAGGGTTCTGGTGGGCGCGTCAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1557:2181..2514+

>mRNA_P-wetherbeei_contig1557.3.1 ID=mRNA_P-wetherbeei_contig1557.3.1|Name=mRNA_P-wetherbeei_contig1557.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig1557:2181..2514+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCGGGTCGACCTCGAGGGCAAGACCTGCTCCTGCATCTTCTGGGACCA
GATCGGCATCCCATGCCGCCACGCAATTGCTGCAAAGTACGCGGAGCAAG
GCGGCACCATCAGGGATGCGCTGGAATGGTTCTCCACTGCCTTCGCCCGG
CAGTACCAGATTGAGAACTTCCTGAAGGCCTTCTCCGTCAGCCGCGGCAT
CGAGCTTCCTCTCGCAGAGAATGTTACCTGCGACGAGGAAACGCTTCCGC
CGCTGGCGCCTCCGCCGTGCGCTGGCCGCCCGAGCACTCTCCGATTCGTC
AGTGCCGGGGAGGGTTCTGGTGGGCGCGTCAGC
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