mRNA_P-wetherbeei_contig15566.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15566.2.1
Unique NamemRNA_P-wetherbeei_contig15566.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: T0PTH3_SAPDV (Derlin n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0PTH3_SAPDV)

HSP 1 Score: 162 bits (409), Expect = 5.590e-48
Identity = 77/106 (72.64%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 ALCALDVVSPYSFYFNPTLIL-RGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            A CAL+++SP+S YFN  LI  RGQVWRL TNFLFFG  S DFLFHMYFLVRY+R LEEG FRGRTADFL M+LFGA  M  VAPF++VHF+ +SLTFMMVY+WGR
Sbjct:   27 AACALELISPFSLYFNFNLIFYRGQVWRLLTNFLFFGLFSLDFLFHMYFLVRYSRMLEEGSFRGRTADFLYMILFGAAFMILVAPFVSVHFLGSSLTFMMVYIWGR 132
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: A0A7S4A4N2_9STRA (Derlin n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4N2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.690e-47
Identity = 75/106 (70.75%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 ALCALDVVSPYSFYFNPTLILR-GQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            A CALD+VSP+S Y+N +LI   GQVWRLATNFLFFG  S DFLFHMYFL RY R LEEGEFRGRT DF++ML FGA CM  +AP+++VHF+ +SL FMMVYVWGR
Sbjct:   32 AACALDLVSPFSLYYNYSLIYHEGQVWRLATNFLFFGMFSLDFLFHMYFLCRYCRLLEEGEFRGRTGDFIVMLAFGASCMVLLAPWISVHFLGSSLAFMMVYVWGR 137
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: A0A3R7A9A4_9STRA (Derlin n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A9A4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.190e-47
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    7 CALDVVSPYSFYFNPTLIL-RGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            CAL+++SP+S YFN  LI  RGQVWRL TNFLFFG  S D++FHMYFLVRY+R LEEG FRGRTADFL MLL GA  M  VAPF++VHF+ +SLTFMMVYVWGR
Sbjct:   29 CALELISPFSLYFNFNLIFYRGQVWRLVTNFLFFGLFSLDYIFHMYFLVRYSRMLEEGSFRGRTADFLYMLLLGAVSMILVAPFVSVHFLGSSLTFMMVYVWGR 132
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: W4FR20_9STRA (Derlin n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR20_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.900e-46
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    7 CALDVVSPYSFYFNPTLIL-RGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            CAL+++SP+S YFN  LI  RGQVWRL TNFLFFG  S DF+FHMYFLVRY+R LEEG FRGRTADFL MLL GA  M  VAPF++VHF+ +SLTFMMVYVWGR
Sbjct:   29 CALELISPFSLYFNFNLIFYRGQVWRLVTNFLFFGLFSLDFIFHMYFLVRYSRMLEEGSFRGRTADFLYMLLLGALTMILVAPFVSVHFLGSSLTFMMVYVWGR 132
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: A0A485LAJ1_9STRA (Derlin n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LAJ1_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.920e-46
Identity = 77/106 (72.64%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 ALCALDVVSPYSFYFNPTLIL-RGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            A CAL+++SP+S YFN  LI  RGQVWRL TNFLFFG  S DFLFHMYFLVRY+R LEEG FRGRTADFL MLL GA  M  VAPF++VHF+ +SLTFMMVY+WGR
Sbjct:   60 AACALELISPFSLYFNFNLIFYRGQVWRLLTNFLFFGLFSLDFLFHMYFLVRYSRMLEEGSFRGRTADFLYMLLLGAFFMILVAPFVSVHFLGSSLTFMMVYIWGR 165
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: A0A7S2VAD3_9STRA (Derlin n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAD3_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.880e-46
Identity = 71/105 (67.62%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    1 ALCALDVVSPYSFYFNPTLILRGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            A CA+D++SP+S YFN  L++ GQVWRL T++LFFG  S DFLFHMYFLVRY+R LEEGEFRGRTA++LLMLLFG  C++ VA +L VHF+ ++LTFMM YVWGR
Sbjct:   44 AACAVDIISPFSLYFNWELVVGGQVWRLLTSYLFFGVFSIDFLFHMYFLVRYSRLLEEGEFRGRTANYLLMLLFGIACISVVASYLNVHFLGSALTFMMAYVWGR 148
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: B8C4L3_THAPS (Derlin n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4L3_THAPS)

HSP 1 Score: 156 bits (394), Expect = 5.540e-46
Identity = 71/104 (68.27%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    7 CALDVVSPYSFYFNPTLIL-RGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            CALD++SP+S YFN  LI  +GQ+WRL T +LFFG  S DFLFHMYFLVRY R LEEG+FRG+TA+F++M++FG   MTAVAPF++VHF+ +SLTFMMVYVWGR
Sbjct:   25 CALDIISPFSLYFNFDLIFFQGQIWRLITTYLFFGMFSIDFLFHMYFLVRYCRMLEEGDFRGKTANFVMMIMFGVIFMTAVAPFVSVHFLGSSLTFMMVYVWGR 128
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: A0A7S0C6N2_9STRA (Derlin n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C6N2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 8.520e-46
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 ALCALDVVSPYSFYFNPTLI-LRGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            A CA+D++SP+S YFN  LI ++GQVWRL T FLFFG  S DFLFHMYFLVRY R LEEG+FRGRTA F++ LLFG   MTAVAPF++VHF+ ++LTFMMVYVWGR
Sbjct:   88 AACAVDIISPFSLYFNANLIFVQGQVWRLVTTFLFFGLFSIDFLFHMYFLVRYCRLLEEGDFRGRTAHFVVFLLFGITMMTAVAPFVSVHFLGSALTFMMVYVWGR 193
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: A0A8K1C5Z3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Z3_PYTOL)

HSP 1 Score: 155 bits (393), Expect = 1.600e-45
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    7 CALDVVSPYSFYFNPTLIL-RGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            CALD+VSP+S YFN  LI  +GQVWRL TNFLFFG  S DFLFHMYF+VRY R LEEG FRGRTADFL MLL GA  M  VAPF+ +HF+ +SLTFMMVYVWGR
Sbjct:   29 CALDLVSPFSLYFNFNLIFFKGQVWRLLTNFLFFGLFSLDFLFHMYFVVRYCRLLEEGSFRGRTADFLYMLLLGAFFMILVAPFVNIHFLGSSLTFMMVYVWGR 132
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BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Match: F0YHR9_AURAN (Derlin (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHR9_AURAN)

HSP 1 Score: 153 bits (387), Expect = 2.490e-45
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 ALCALDVVSPYSFYFNPTLIL-RGQVWRLATNFLFFGNLSFDFLFHMYFLVRYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMVYVWGR 315
            A CALD+VSP++ Y+N +LI  +GQ+WRLATNF FFG  S DFLFH+YFLVRY R LEEGEFRGRT DF++ML FGAG M   AP L+VHF+ +SL FMMVYVWGR
Sbjct:   21 AACALDLVSPFALYYNFSLIFHKGQLWRLATNFFFFGMFSLDFLFHLYFLVRYCRLLEEGEFRGRTLDFVVMLGFGAGVMLLFAPLLSVHFLGSSLAFMMVYVWGR 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15566.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T0PTH3_SAPDV5.590e-4872.64Derlin n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0... [more]
A0A7S4A4N2_9STRA2.690e-4770.75Derlin n=2 Tax=Pelagomonas calceolata TaxID=35677 ... [more]
A0A3R7A9A4_9STRA6.190e-4772.12Derlin n=1 Tax=Aphanomyces invadans TaxID=157072 R... [more]
W4FR20_9STRA1.900e-4673.08Derlin n=3 Tax=Aphanomyces astaci TaxID=112090 Rep... [more]
A0A485LAJ1_9STRA1.920e-4672.64Derlin n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0... [more]
A0A7S2VAD3_9STRA2.880e-4667.62Derlin n=2 Tax=Amphiprora paludosa TaxID=265537 Re... [more]
B8C4L3_THAPS5.540e-4668.27Derlin n=1 Tax=Thalassiosira pseudonana TaxID=3512... [more]
A0A7S0C6N2_9STRA8.520e-4669.81Derlin n=1 Tax=Proboscia inermis TaxID=420281 RepI... [more]
A0A8K1C5Z3_PYTOL1.600e-4573.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0YHR9_AURAN2.490e-4568.87Derlin (Fragment) n=1 Tax=Aureococcus anophageffer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15566contigP-wetherbeei_contig15566:484..1390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008621042.1
Preferred nameDERL2
PFAMsDER1
Model size315
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC02120,RC03389,RC03391
KEGG koko:K13989,ko:K19737
KEGG ReactionR11216,R11218,R11220
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal anchor
GOsGO:0001558,GO:0001967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006986,GO:0007154,GO:0007165,GO:0007610,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010605,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0030176,GO:0030307,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032527,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033554,GO:0034613,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0040008,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042742,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045861,GO:0045927,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051246,GO:0051248,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051705,GO:0051707,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070085,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070887,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0097708,GO:0098542,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903513,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904380,GO:1904950,GO:1905897
Exons3
Evalue9.17e-49
EggNOG OGsCOG5291@1|root,KOG0858@2759|Eukaryota
EC2.1.1.320
Descriptionubiquitin-dependent ERAD pathway
Cds size315
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.194462-CDS-P-wetherbeei_contig15566:483..6461683186060.194462-CDS-P-wetherbeei_contig15566:483..646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15566 484..646 -
1683186060.2073462-CDS-P-wetherbeei_contig15566:892..9721683186060.2073462-CDS-P-wetherbeei_contig15566:892..972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15566 893..972 -
1683186060.2163646-CDS-P-wetherbeei_contig15566:1318..13901683186060.2163646-CDS-P-wetherbeei_contig15566:1318..1390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15566 1319..1390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15566.2.1prot_P-wetherbeei_contig15566.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15566 484..1390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15566.2.1

>prot_P-wetherbeei_contig15566.2.1 ID=prot_P-wetherbeei_contig15566.2.1|Name=mRNA_P-wetherbeei_contig15566.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
ALCALDVVSPYSFYFNPTLILRGQVWRLATNFLFFGNLSFDFLFHMYFLV
RYARQLEEGEFRGRTADFLLMLLFGAGCMTAVAPFLAVHFMSNSLTFMMV
YVWGR
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mRNA from alignment at P-wetherbeei_contig15566:484..1390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15566.2.1 ID=mRNA_P-wetherbeei_contig15566.2.1|Name=mRNA_P-wetherbeei_contig15566.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=907bp|location=Sequence derived from alignment at P-wetherbeei_contig15566:484..1390- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGTGCGCGCTGGACGTGGTGTCGCCGTACTCGTTCTACTTCAACCC
GACACTCATCCTGCGGGGCCAGGTGACCCTTTTTTTAAAGGAAAGAGACA
GAGAGTGGTAACAAAAGAAATAGCAAAAAGAAGAATTGGTGGCGAAAGAA
ACGCTGTGGGGAGATCTCTTGCTCTCTTTTTTAGAGCTTGGAACTGTTGG
TGCTTGGTTTTGGTAAATGTCGTTGGACTTAGGCTGATATATGGGGAAAG
ACCATTTGCGTCCGCAATCGGCCAGGGGCCCCCTCTTAGTTGGGCTTTGC
TCGGGTGTTGGCCGAGTCGATAGATCACAGCATTACGATTGGACGACCCT
GCTGAGAAAGGCAAAAAACCTGCTTTCCGGCGGCGGTGGTGGTGGCGGCG
ACGATGTCCGGCCGGCAGGTGTGGCGCCTCGCCACGAACTTCCTCTTCTT
CGGGAACCTTTCGTTCGACTTCCTCTTCCACATGTACTTCCTCGTCAGGT
GAGGAGCAATGGAAGGAGGTCGAGGAAGGAAATGAGATATCTTATTCAGT
CTTTTATTCTTTTTGGACCCGTTTTGCTCTTCGTCTCCCTTGATTCTCGT
TGTTTCTTGTCGCGGTCCCGATGCTTCTCGCGTCCTTTTCTTCATCTTCT
TCCTCTTCTTCCGCCTCAATGGCTTGTCCTCCCTCTCTCGCGCGCACATT
ATTCCTTTGAATATCCTCTCGCCACCTCACCCATCTGCTCGCAGATACGC
CCGACAGCTGGAGGAAGGGGAATTCCGCGGCCGCACGGCGGACTTTCTAC
TGATGCTGCTCTTCGGCGCAGGCTGCATGACGGCCGTGGCGCCCTTCTTG
GCGGTGCACTTCATGAGCAACTCACTCACCTTCATGATGGTCTACGTCTG
GGGCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15566:484..1390-

>mRNA_P-wetherbeei_contig15566.2.1 ID=mRNA_P-wetherbeei_contig15566.2.1|Name=mRNA_P-wetherbeei_contig15566.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig15566:484..1390- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGTGCGCGCTGGACGTGGTGTCGCCGTACTCGTTCTACTTCAACCC
GACACTCATCCTGCGGGGCCAGGTGTGGCGCCTCGCCACGAACTTCCTCT
TCTTCGGGAACCTTTCGTTCGACTTCCTCTTCCACATGTACTTCCTCGTC
AGATACGCCCGACAGCTGGAGGAAGGGGAATTCCGCGGCCGCACGGCGGA
CTTTCTACTGATGCTGCTCTTCGGCGCAGGCTGCATGACGGCCGTGGCGC
CCTTCTTGGCGGTGCACTTCATGAGCAACTCACTCACCTTCATGATGGTC
TACGTCTGGGGCAGG
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