mRNA_P-wetherbeei_contig15561.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15561.1.1
Unique NamemRNA_P-wetherbeei_contig15561.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15561.1.1 vs. uniprot
Match: D8LKM5_ECTSI (Zinc finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 5.760e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 2 
Query:  533 LRASCETCSARKKRCDGVQPCCGYCNSRGLNCVYSVKRRRGPAKGTKYRRRQPK 694
            LR SC+ C   K+ C G  PC   CN R  NC+ S+K+R GPAKGTKY +R+P+
Sbjct:   23 LRKSCDYCVRMKRGCSGGTPC-ALCNRRNKNCIRSIKKRSGPAKGTKYCKRKPR 75
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BLAST of mRNA_P-wetherbeei_contig15561.1.1 vs. uniprot
Match: A0A167EZ30_9ASCO (Asg1p n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167EZ30_9ASCO)

HSP 1 Score: 58.2 bits (139), Expect = 4.280e-6
Identity = 29/61 (47.54%), Postives = 32/61 (52.46%), Query Frame = 2 
Query:  545 CETCSARKKRCDGVQPCCGYCNSRGLNCVYSVKRRRGPAKGTKYRRRQPKIGLVMEDDDDD 727
            C  C  RK RCDG QP CG CNSRG NC Y+ K  R        R  + K+GLV   D  D
Sbjct:   54 CVQCRDRKVRCDGAQPSCGRCNSRGTNCTYAKKFARARVSAEYVRELEEKLGLVGGSDSRD 114
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BLAST of mRNA_P-wetherbeei_contig15561.1.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.070e-5
Identity = 31/72 (43.06%), Postives = 37/72 (51.39%), Query Frame = 2 
Query:  482 SSVANEAQHVETSAFAELRASCETCSARKKRCDGVQPCCGYCNSRGLNCVYSVKRRRGPAKGTKYRRRQPKI 697
            S   NE Q         LR SC+ C   K+ CDG  PC   C  R   C  SVKR+ GPAKGTKY  R+ ++
Sbjct:   17 SDTGNEGQPTTDGGRVLLRKSCDLCVRLKRACDGQSPC-QLCLRRRETCTRSVKRKSGPAKGTKYTTRRVRM 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15561.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKM5_ECTSI5.760e-751.85Zinc finger transcriptional regulator n=1 Tax=Ecto... [more]
A0A167EZ30_9ASCO4.280e-647.54Asg1p n=1 Tax=Sugiyamaella lignohabitans TaxID=796... [more]
A0A6H5L7F3_9PHAE7.070e-543.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15561contigP-wetherbeei_contig15561:537..1464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog710243.XP_007602923.1
PFAMsFungal_trans,Zn_clus
Model size737
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.51e-07
EggNOG OGs2D1BN@1|root,2SHHD@2759|Eukaryota,3AEKJ@33154|Opisthokonta,3PAU0@4751|Fungi,3R2F6@4890|Ascomycota,21E9B@147550|Sordariomycetes,1F1IT@1028384|Glomerellales
DescriptionFungal specific transcription factor domain-containing protein
Cds size273
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.0035605-CDS-P-wetherbeei_contig15561:536..6211683186060.0035605-CDS-P-wetherbeei_contig15561:536..621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15561 537..621 -
1683186060.013427-CDS-P-wetherbeei_contig15561:813..10011683186060.013427-CDS-P-wetherbeei_contig15561:813..1001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15561 814..1001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.0219624-UTR-P-wetherbeei_contig15561:1001..14641683186060.0219624-UTR-P-wetherbeei_contig15561:1001..1464Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15561 1002..1464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15561.1.1prot_P-wetherbeei_contig15561.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15561 537..1001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15561.1.1

>prot_P-wetherbeei_contig15561.1.1 ID=prot_P-wetherbeei_contig15561.1.1|Name=mRNA_P-wetherbeei_contig15561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MGIEEPSSVANEAQHVETSAFAELRASCETCSARKKRCDGVQPCCGYCNS
RGLNCVYSVKRRRGPAKGTKYRRRQPKIGLVMEDDDDDTCG
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mRNA from alignment at P-wetherbeei_contig15561:537..1464-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15561.1.1 ID=mRNA_P-wetherbeei_contig15561.1.1|Name=mRNA_P-wetherbeei_contig15561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=928bp|location=Sequence derived from alignment at P-wetherbeei_contig15561:537..1464- (Phaeothamnion wetherbeei SAG_119_79)
TTTTTGAGTCGCGGTGGTTAAGGGTGGTTAAACCACGTGGTTATAACCAC
CTGGTTAATTGGTTAACATTTAACCGCGTACACTGGGTGAGAAGGCTTTT
TGGTTTCTCACCCCCTGAAAAAAAGAGCATCTCCCTCACGATATCATAAA
AAAGAAGCTGTTTTCGACGGGACAGAACAAAACCAAAGTTATTCCAGGAA
TTAACCACAAGAAAAGAAGTGGCGGTGGGAGGGATCCGGGCCTCACTCCT
TTGCGACCCTTGCACAGACAACACCGGCTGCTGAATTTCCTGCCAAGGCG
TCCACCCGCATTTACTCAATTTCTTCCGACCTTTACCGAAAGAGGCGGAC
TTGGAGCTTGTCCCGTTCAGGAAAAAATAAGTTGATGCAGCCCTAGTAAA
TCTCCAGTCTACAAGTCGCGACAAAACGAGAGGTAGGTTGTCGTGTGAAT
CGTAGAGGCGCAAATGGGGATAGAGGAACCATCGAGTGTTGCGAACGAGG
CGCAACATGTGGAGACAAGCGCTTTTGCCGAGCTTCGTGCCTCGTGTGAA
ACCTGCTCTGCGAGGAAAAAGCGATGCGACGGCGTCCAACCTTGCTGCGG
CTACTGCAATTCCCGAGGACTGAACTGTGTATACAGTGTGAAGAGGAGAA
GGTGAGCCCTGGTGCTCTGTACGTGGTCGCGTTCACATTCTTGCCCGGTA
CAAGTAATGTTTGCTGAGCGGCGCCATAAGAACGACCTTTGTGATTTCCT
TCTTCTTCCTTATACCCTCACCGCTCCTTGCGTTTTCTCGGTCTTTTTGG
GGTTGCACTGCGACCGCCTTCTCGTCCCTCTCTCCTTCCTTAGAGGCCCT
GCAAAGGGCACAAAGTACCGTAGAAGGCAGCCCAAAATAGGTCTGGTGAT
GGAGGATGATGATGATGACACCTGTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15561:537..1464-

>mRNA_P-wetherbeei_contig15561.1.1 ID=mRNA_P-wetherbeei_contig15561.1.1|Name=mRNA_P-wetherbeei_contig15561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig15561:537..1464- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGATAGAGGAACCATCGAGTGTTGCGAACGAGGCGCAACATGTGGA
GACAAGCGCTTTTGCCGAGCTTCGTGCCTCGTGTGAAACCTGCTCTGCGA
GGAAAAAGCGATGCGACGGCGTCCAACCTTGCTGCGGCTACTGCAATTCC
CGAGGACTGAACTGTGTATACAGTGTGAAGAGGAGAAGAGGCCCTGCAAA
GGGCACAAAGTACCGTAGAAGGCAGCCCAAAATAGGTCTGGTGATGGAGG
ATGATGATGATGACACCTGTGGA
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