mRNA_P-wetherbeei_contig1556.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1556.2.1
Unique NamemRNA_P-wetherbeei_contig1556.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1556.2.1 vs. uniprot
Match: A0A662Y5C3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5C3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.790e-9
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 2 
Query:  920 AFRAMNVLFHDDNWEALLETDHRVPRGSLDAKEVRGQSPFWVGRAKECS-DEAFDAGGVLDSFVHHCEDDQIHYNVDISAGVFSIEFSGIDLYSLYKKIRGDFDTAWAKFAVSGSHNNFWSFCNGNVASLYLWHWRKVRGD 1339
            AFR +NV+F D     + E D    R  LD + V   SP+W    K  + D A   G V+D       +D ++  V+ +    ++  S   L  ++KK    +D A  +   SGSH +FW+FC G++ +LYL  W +V  D
Sbjct:   96 AFRLLNVIFSDAFVARMGEADPTPERQLLDERAVNENSPYWSDITKVFNEDTAHHNGFVVD------REDSLYSGVEPA---LAVPHSSYKLQDMWKKTVARYDKALRRSKRSGSHGDFWNFCEGHMDALYLHDWLQVLSD 227
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BLAST of mRNA_P-wetherbeei_contig1556.2.1 vs. uniprot
Match: A0A662XHM3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHM3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 8.840e-9
Identity = 46/160 (28.75%), Postives = 69/160 (43.12%), Query Frame = 2 
Query:  875 RRCISGGSFASGQSQAFRAMNVLFHDDNWEALLETDHRVPRGSLDAKEVRGQSPFWVGRAKECSDEAFDAGGVLDSFVHHC-----EDDQIHYNVDISAGVFSIEFSGIDLYSLYKKIRGDFDTAWAKFAVSGSHNNFWSFCNGNVASLYLWHWRKVRGD 1339
            R  +S G     +   FR +NV+F D     + E D    R  LD + V   SP+W+   K  +++            HH       +D ++  VD +    ++  S   L  ++K+     D A  K   SGSH  FW FC GN+ +LYL  W +V  D
Sbjct:   81 RISVSEGDHRPTKHCTFRLLNVIFSDAFVARMGEADQTPDRQLLDVRAVNENSPYWLDITKAFNED----------IAHHNVLAVEREDALYSGVDPA---LAVPHSSYKLREIWKRTVARHDKALRKSKRSGSHGEFWGFCEGNMDALYLHDWLQVLSD 227
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1556.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A662Y5C3_9STRA2.790e-931.91Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XHM3_9STRA8.840e-928.75Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1556contigP-wetherbeei_contig1556:1951..4268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI53257
Model size2038
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.14e-05
EggNOG OGs2EPIC@1|root,2SSQG@2759|Eukaryota,3QI41@4776|Peronosporales
Cds size1980
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.8730333-UTR-P-wetherbeei_contig1556:1950..19961683186059.8730333-UTR-P-wetherbeei_contig1556:1950..1996Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1556 1951..1996 +
1683186059.9148939-UTR-P-wetherbeei_contig1556:4256..42681683186059.9148939-UTR-P-wetherbeei_contig1556:4256..4268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1556 4257..4268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.8812227-CDS-P-wetherbeei_contig1556:1996..30221683186059.8812227-CDS-P-wetherbeei_contig1556:1996..3022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1556 1997..3022 +
1683186059.8957534-CDS-P-wetherbeei_contig1556:3125..34001683186059.8957534-CDS-P-wetherbeei_contig1556:3125..3400Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1556 3126..3400 +
1683186059.9061143-CDS-P-wetherbeei_contig1556:3577..42561683186059.9061143-CDS-P-wetherbeei_contig1556:3577..4256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1556 3578..4256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1556.2.1prot_P-wetherbeei_contig1556.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1556 1997..4256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1556.2.1

>prot_P-wetherbeei_contig1556.2.1 ID=prot_P-wetherbeei_contig1556.2.1|Name=mRNA_P-wetherbeei_contig1556.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=660bp
MDASTRASPIAALQDEIVPPQVAQLGVVLMRRGEYNPGDMPRLVYADGRG
GWATCPSPAVARAWCSDQALFDTFLPRERKVAEFTARLETAAAAEAHYGR
IIADRAAAAAEAASAARFGGAGLSGVGGGSSRSSPPPGRGSGDESWNGFG
VDEGDDSSDIESGTGVRNRGRQLMSRRPRGRYVLWKRDHLKARAVKWGVG
HGLSTAKKRRFVCALNSYEKRRFAKLQAEGKPRPDGSSDDDDAFDGDWSS
LPVDDTNLSGAHQARPLLPAAAKGASRRCISGGSFASGQSQAFRAMNVLF
HDDNWEALLETDHRVPRGSLDAKEVRGQSPFWVGRAKECSDEAFDAGGVL
DSFVHHCEDDQIHYNVDISAGVFSIEFSGIDLYSLYKKIRGDFDTAWAKF
AVSGSHNNFWSFCNGNVASLYLWHWRKVRGDTFSKFIAVELPPGQSVHAG
GDSDDDVYSNLKPLGSLDQWYNDADNGSHVTDASSGHDESNSSGIRAAGA
STGSTASSATRLDKGKGLIGGRHGGGSNSGKGSGRRRRAGSDGGESAAAV
VASGFQALAAAYERSHQPPPQTAAVPGKAVPAAKMAEEERLMANLEKYRR
HIYEGNKRITELQDKAAKGTALDSGDQMELATAKRTKISLLRRVDKLQLA
LDALSDEEA*
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mRNA from alignment at P-wetherbeei_contig1556:1951..4268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1556.2.1 ID=mRNA_P-wetherbeei_contig1556.2.1|Name=mRNA_P-wetherbeei_contig1556.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2318bp|location=Sequence derived from alignment at P-wetherbeei_contig1556:1951..4268+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGGTTCGATGAAACTGAGGGCGTGAAAGGAGGACAAACTGCAAAATGG
ACGCTTCAACGCGAGCTTCCCCCATCGCTGCTCTCCAGGATGAGATAGTC
CCTCCACAAGTCGCGCAATTAGGTGTTGTGCTCATGCGGCGAGGAGAGTA
TAATCCTGGCGACATGCCCAGACTCGTCTATGCAGACGGCCGCGGTGGTT
GGGCGACCTGTCCTTCGCCCGCCGTCGCGCGGGCATGGTGCAGCGACCAA
GCTCTCTTCGACACCTTCCTCCCAAGGGAGCGTAAAGTCGCCGAGTTCAC
CGCGCGCCTGGAAACGGCGGCGGCGGCCGAAGCTCACTACGGGAGGATCA
TCGCTGACCGCGCAGCGGCGGCGGCAGAGGCCGCAAGCGCTGCTCGATTT
GGGGGAGCAGGCCTCTCAGGAGTGGGGGGTGGAAGCAGTCGCTCTTCGCC
GCCACCCGGCCGCGGCAGCGGCGATGAATCCTGGAATGGGTTCGGTGTCG
ACGAGGGCGACGACAGCTCGGACATCGAGTCCGGCACTGGAGTGCGCAAC
CGTGGTCGGCAATTAATGTCGAGGAGACCACGTGGCAGGTATGTTCTCTG
GAAACGGGACCACCTGAAGGCGCGTGCCGTTAAATGGGGGGTCGGTCATG
GCTTATCAACCGCTAAGAAGCGCAGGTTTGTCTGTGCGTTGAATTCGTAT
GAGAAGAGGAGATTTGCTAAGCTGCAGGCTGAGGGCAAGCCACGGCCCGA
CGGCTCCTCAGACGACGACGACGCCTTCGACGGCGACTGGAGCAGTCTGC
CCGTCGACGACACCAACCTCAGTGGCGCGCATCAGGCCCGCCCTTTGTTG
CCTGCGGCTGCCAAGGGGGCGAGCCGGAGGTGCATTAGTGGCGGCTCATT
TGCATCGGGCCAAAGCCAGGCATTTCGTGCCATGAACGTCCTTTTCCATG
ACGACAACTGGGAAGCTCTTTTGGAGACGGATCACCGAGTGCCCCGCGGT
AGCCTGGATGCCAAGGAGGTTAGAGGCCAGTCACCTTTCTGGGTCGGCAG
GGCCAAGGAGTGCTCTGACGAGGTGAGAGAGTGAATATTATGTTCGAAAC
CTTTTGATCGCTGCATACGTCTTATATGACAGTAAGCCGTCCCCTCCCTC
CTTCTGCGCTGGTTTCCGCTTTCAGGCCTTTGATGCAGGGGGGGTGTTGG
ATTCTTTTGTGCATCATTGTGAAGATGACCAGATCCACTACAATGTAGAC
ATCTCTGCCGGCGTCTTCTCCATCGAGTTCTCGGGCATCGACCTGTACAG
CCTGTACAAAAAGATCCGCGGCGACTTTGACACGGCATGGGCCAAATTTG
CTGTTTCGGGAAGCCACAACAACTTCTGGTCTTTCTGCAACGGCAACGTC
GCGTCGCTATACTTGTGGCATTGGAGAAAGGTTCGCGGCGATACCTTTTC
GTAAGTACACTTTGTCGCTCCGTTTTTGCGGCCTGAAAAATGTGGAAGCT
TCCCTTATTGATTTTCTCTTTCCTTTCTGACTTTCCACGGACCTCCGCTT
GCGCTTCAAGCAACCACAATCGCCCGCTCTCTGCCCTTTCACGACCGCTG
CCGTCCGCTTTCGGTGTTCTGCCGCAGGAAATTCATCGCGGTCGAGCTGC
CTCCGGGTCAGTCTGTCCATGCTGGTGGCGATTCCGATGACGACGTCTAC
AGCAACCTGAAGCCGCTCGGCAGTCTAGATCAATGGTATAACGACGCCGA
CAATGGCTCGCACGTCACCGACGCCAGTTCCGGGCATGACGAGAGCAACT
CCAGCGGTATTAGGGCAGCAGGAGCAAGCACCGGCAGTACCGCCAGCTCC
GCTACCCGTCTCGATAAGGGTAAGGGCCTTATCGGCGGCCGTCACGGCGG
CGGAAGCAATTCTGGGAAAGGATCGGGTCGGCGCAGGCGGGCGGGCAGCG
ACGGGGGGGAATCTGCCGCCGCTGTGGTTGCGAGTGGGTTTCAAGCCCTT
GCCGCGGCATACGAGCGGTCGCACCAGCCGCCGCCGCAGACTGCCGCAGT
TCCAGGAAAGGCGGTGCCGGCGGCAAAAATGGCGGAGGAGGAAAGGCTAA
TGGCCAACTTGGAGAAGTACCGCCGGCACATTTATGAAGGGAACAAACGG
ATAACAGAGCTACAGGATAAGGCGGCGAAGGGCACAGCCCTTGATTCAGG
GGATCAGATGGAGCTCGCGACGGCGAAGAGGACGAAAATCTCGCTGTTAC
GTAGGGTGGACAAGTTGCAATTGGCTCTCGACGCGCTCAGTGATGAGGAG
GCATAGCTAAAGAGCGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1556:1951..4268+

>mRNA_P-wetherbeei_contig1556.2.1 ID=mRNA_P-wetherbeei_contig1556.2.1|Name=mRNA_P-wetherbeei_contig1556.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1980bp|location=Sequence derived from alignment at P-wetherbeei_contig1556:1951..4268+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCTTCAACGCGAGCTTCCCCCATCGCTGCTCTCCAGGATGAGAT
AGTCCCTCCACAAGTCGCGCAATTAGGTGTTGTGCTCATGCGGCGAGGAG
AGTATAATCCTGGCGACATGCCCAGACTCGTCTATGCAGACGGCCGCGGT
GGTTGGGCGACCTGTCCTTCGCCCGCCGTCGCGCGGGCATGGTGCAGCGA
CCAAGCTCTCTTCGACACCTTCCTCCCAAGGGAGCGTAAAGTCGCCGAGT
TCACCGCGCGCCTGGAAACGGCGGCGGCGGCCGAAGCTCACTACGGGAGG
ATCATCGCTGACCGCGCAGCGGCGGCGGCAGAGGCCGCAAGCGCTGCTCG
ATTTGGGGGAGCAGGCCTCTCAGGAGTGGGGGGTGGAAGCAGTCGCTCTT
CGCCGCCACCCGGCCGCGGCAGCGGCGATGAATCCTGGAATGGGTTCGGT
GTCGACGAGGGCGACGACAGCTCGGACATCGAGTCCGGCACTGGAGTGCG
CAACCGTGGTCGGCAATTAATGTCGAGGAGACCACGTGGCAGGTATGTTC
TCTGGAAACGGGACCACCTGAAGGCGCGTGCCGTTAAATGGGGGGTCGGT
CATGGCTTATCAACCGCTAAGAAGCGCAGGTTTGTCTGTGCGTTGAATTC
GTATGAGAAGAGGAGATTTGCTAAGCTGCAGGCTGAGGGCAAGCCACGGC
CCGACGGCTCCTCAGACGACGACGACGCCTTCGACGGCGACTGGAGCAGT
CTGCCCGTCGACGACACCAACCTCAGTGGCGCGCATCAGGCCCGCCCTTT
GTTGCCTGCGGCTGCCAAGGGGGCGAGCCGGAGGTGCATTAGTGGCGGCT
CATTTGCATCGGGCCAAAGCCAGGCATTTCGTGCCATGAACGTCCTTTTC
CATGACGACAACTGGGAAGCTCTTTTGGAGACGGATCACCGAGTGCCCCG
CGGTAGCCTGGATGCCAAGGAGGTTAGAGGCCAGTCACCTTTCTGGGTCG
GCAGGGCCAAGGAGTGCTCTGACGAGGCCTTTGATGCAGGGGGGGTGTTG
GATTCTTTTGTGCATCATTGTGAAGATGACCAGATCCACTACAATGTAGA
CATCTCTGCCGGCGTCTTCTCCATCGAGTTCTCGGGCATCGACCTGTACA
GCCTGTACAAAAAGATCCGCGGCGACTTTGACACGGCATGGGCCAAATTT
GCTGTTTCGGGAAGCCACAACAACTTCTGGTCTTTCTGCAACGGCAACGT
CGCGTCGCTATACTTGTGGCATTGGAGAAAGGTTCGCGGCGATACCTTTT
CGAAATTCATCGCGGTCGAGCTGCCTCCGGGTCAGTCTGTCCATGCTGGT
GGCGATTCCGATGACGACGTCTACAGCAACCTGAAGCCGCTCGGCAGTCT
AGATCAATGGTATAACGACGCCGACAATGGCTCGCACGTCACCGACGCCA
GTTCCGGGCATGACGAGAGCAACTCCAGCGGTATTAGGGCAGCAGGAGCA
AGCACCGGCAGTACCGCCAGCTCCGCTACCCGTCTCGATAAGGGTAAGGG
CCTTATCGGCGGCCGTCACGGCGGCGGAAGCAATTCTGGGAAAGGATCGG
GTCGGCGCAGGCGGGCGGGCAGCGACGGGGGGGAATCTGCCGCCGCTGTG
GTTGCGAGTGGGTTTCAAGCCCTTGCCGCGGCATACGAGCGGTCGCACCA
GCCGCCGCCGCAGACTGCCGCAGTTCCAGGAAAGGCGGTGCCGGCGGCAA
AAATGGCGGAGGAGGAAAGGCTAATGGCCAACTTGGAGAAGTACCGCCGG
CACATTTATGAAGGGAACAAACGGATAACAGAGCTACAGGATAAGGCGGC
GAAGGGCACAGCCCTTGATTCAGGGGATCAGATGGAGCTCGCGACGGCGA
AGAGGACGAAAATCTCGCTGTTACGTAGGGTGGACAAGTTGCAATTGGCT
CTCGACGCGCTCAGTGATGAGGAGGCATAG
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