mRNA_P-wetherbeei_contig1555.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1555.7.1
Unique NamemRNA_P-wetherbeei_contig1555.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1555.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1555contigP-wetherbeei_contig1555:5677..6992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI46075
Model size974
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.2e-05
EggNOG OGs2C6AP@1|root,2SAIC@2759|Eukaryota,3QGBI@4776|Peronosporales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_002590.1
Cds size972
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.5811615-CDS-P-wetherbeei_contig1555:5678..62571683186059.5811615-CDS-P-wetherbeei_contig1555:5678..6257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 5679..6257 -
1683186059.5917387-CDS-P-wetherbeei_contig1555:6474..65791683186059.5917387-CDS-P-wetherbeei_contig1555:6474..6579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 6475..6579 -
1683186059.6029425-CDS-P-wetherbeei_contig1555:6704..69921683186059.6029425-CDS-P-wetherbeei_contig1555:6704..6992Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 6705..6992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1555.7.1prot_P-wetherbeei_contig1555.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1555 5679..6992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1555.7.1

>prot_P-wetherbeei_contig1555.7.1 ID=prot_P-wetherbeei_contig1555.7.1|Name=mRNA_P-wetherbeei_contig1555.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=324bp
KSAPEVEAAGPMFRIQRAASTVKFDSDAIVCTSCKTRKGKASCAHRRCVS
CCMQSGSEDCVGHAPELSKKRAEDALLLEAQRGSHRRVPRGMFKEEAFEE
MGETLVIFGLRLFLSNRAFSQEVLDKQTRSKRALGGRHGMAGKALRARKS
GISVGAGASDSDDDWVARLWNRTLARGRAGNGKRKAEGAASGSSKPLSPS
KKRKTVAIAAAAVTAASAAAPAAAAAATAPAKSPASKGKASAAAAATAAT
EPSPVLAAPLPKSPASKGRVRAAAAVTLSKSPARSNVRSAATSKVASEPM
SSPPKHKAAAAGAVEPTPPPRCKA
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mRNA from alignment at P-wetherbeei_contig1555:5677..6992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1555.7.1 ID=mRNA_P-wetherbeei_contig1555.7.1|Name=mRNA_P-wetherbeei_contig1555.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1316bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:5677..6992- (Phaeothamnion wetherbeei SAG_119_79)
AAGTCAGCGCCCGAGGTTGAGGCCGCCGGGCCCATGTTTCGCATTCAGAG
AGCAGCATCGACGGTGAAGTTTGATTCCGATGCGATCGTATGCACGTCGT
GCAAGACGAGGAAGGGGAAAGCATCGTGTGCCCACCGCCGGTGCGTGTCC
TGCTGCATGCAGTCCGGGAGTGAAGACTGCGTTGGCCATGCCCCGGAACT
CAGCAAGAAGCGGGCTGAGGACGCGCTGCTGCTGGAGGCACAGCGCGGCT
CGCACCGTCGCGTTCCCAGGGGCATGTTCAAAGAAGAGGTGAGCCTTTTG
TATTGCGGCGGAAGGACTTTTCCAAACAGGTTGGGAAACGGATATGCCTT
ACACAGCTTTGGTGGATTCAAAAAATGACAGCAGCCGCGCCGCCATACTG
CTCCGTGTGACAGGCGTTCGAAGAGATGGGCGAGACCCTCGTCATATTCG
GCCTCCGGCTCTTTCTGAGCAACCGCGCCTTCAGCCAAGAAGTGCTGGAC
AAGCAGACCCGTTCAAAGGTGCTTGTCATTTCAACCGCAACTTTTTTGGT
GCTCTCAAGTCACCGTTCTTCAATTTAAAAGCTTTGTGACTCGCGCTCCC
GGCTTCCCCGCCTTCCCAAGCTGTCACTGAATCGAATTCCATAGCTTTAC
CTCTCTTCACATCCTTCCCCTCATTGCCGCTGCGTGTTTTCCTCTCTCGT
TTCCGCACTTTCGACGACCACACGCCGTACGGCAGCGCGCGTTGGGTGGC
CGCCACGGGATGGCTGGTAAAGCCCTGCGGGCCAGGAAAAGTGGCATCAG
TGTTGGCGCCGGCGCCAGTGACTCCGACGACGACTGGGTGGCCCGGCTCT
GGAATCGCACCCTGGCGCGGGGCAGGGCGGGGAACGGCAAGCGGAAGGCC
GAAGGCGCGGCCTCGGGATCGTCCAAGCCGCTGTCGCCTTCAAAGAAACG
GAAGACAGTAGCGATAGCGGCAGCCGCCGTGACAGCAGCGTCGGCCGCCG
CGCCAGCAGCGGCGGCAGCGGCGACGGCTCCGGCGAAGTCGCCCGCTTCC
AAGGGCAAAGCCAGCGCGGCGGCGGCGGCCACGGCGGCGACAGAGCCGTC
GCCGGTGCTGGCGGCTCCTCTGCCAAAATCACCTGCGTCTAAGGGCAGGG
TTAGGGCGGCGGCGGCGGTGACTCTGTCAAAGTCACCTGCTAGGAGCAAT
GTCAGGTCGGCGGCGACCTCCAAGGTGGCATCGGAGCCAATGTCGTCGCC
TCCCAAACATAAGGCGGCTGCGGCGGGGGCTGTGGAGCCGACGCCGCCGC
CCAGATGCAAAGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1555:5677..6992-

>mRNA_P-wetherbeei_contig1555.7.1 ID=mRNA_P-wetherbeei_contig1555.7.1|Name=mRNA_P-wetherbeei_contig1555.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:5677..6992- (Phaeothamnion wetherbeei SAG_119_79)
AAGTCAGCGCCCGAGGTTGAGGCCGCCGGGCCCATGTTTCGCATTCAGAG
AGCAGCATCGACGGTGAAGTTTGATTCCGATGCGATCGTATGCACGTCGT
GCAAGACGAGGAAGGGGAAAGCATCGTGTGCCCACCGCCGGTGCGTGTCC
TGCTGCATGCAGTCCGGGAGTGAAGACTGCGTTGGCCATGCCCCGGAACT
CAGCAAGAAGCGGGCTGAGGACGCGCTGCTGCTGGAGGCACAGCGCGGCT
CGCACCGTCGCGTTCCCAGGGGCATGTTCAAAGAAGAGGCGTTCGAAGAG
ATGGGCGAGACCCTCGTCATATTCGGCCTCCGGCTCTTTCTGAGCAACCG
CGCCTTCAGCCAAGAAGTGCTGGACAAGCAGACCCGTTCAAAGCGCGCGT
TGGGTGGCCGCCACGGGATGGCTGGTAAAGCCCTGCGGGCCAGGAAAAGT
GGCATCAGTGTTGGCGCCGGCGCCAGTGACTCCGACGACGACTGGGTGGC
CCGGCTCTGGAATCGCACCCTGGCGCGGGGCAGGGCGGGGAACGGCAAGC
GGAAGGCCGAAGGCGCGGCCTCGGGATCGTCCAAGCCGCTGTCGCCTTCA
AAGAAACGGAAGACAGTAGCGATAGCGGCAGCCGCCGTGACAGCAGCGTC
GGCCGCCGCGCCAGCAGCGGCGGCAGCGGCGACGGCTCCGGCGAAGTCGC
CCGCTTCCAAGGGCAAAGCCAGCGCGGCGGCGGCGGCCACGGCGGCGACA
GAGCCGTCGCCGGTGCTGGCGGCTCCTCTGCCAAAATCACCTGCGTCTAA
GGGCAGGGTTAGGGCGGCGGCGGCGGTGACTCTGTCAAAGTCACCTGCTA
GGAGCAATGTCAGGTCGGCGGCGACCTCCAAGGTGGCATCGGAGCCAATG
TCGTCGCCTCCCAAACATAAGGCGGCTGCGGCGGGGGCTGTGGAGCCGAC
GCCGCCGCCCAGATGCAAAGCC
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