mRNA_P-wetherbeei_contig1555.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1555.2.1
Unique NamemRNA_P-wetherbeei_contig1555.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Match: D7FY58_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY58_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.500e-45
Identity = 86/143 (60.14%), Postives = 103/143 (72.03%), Query Frame = 1 
Query:  391 SKVLCFFRFLTVVTILLAVVVAAVNAYIIYKDYESLGVRGILLRVYGIMFSFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSESSSXXXXXXXTYSSDYDDAEDVVAFMMMGVGVVYIILGMACMRTVKEAE 819
            S+ LCFFRFL V+T+LLA+VV   N YIIY  Y  +  RGILLRVYGI+FS FVI +ELEW +FT  FGFL+ W ARG+ Y FVGLITWDQT  +SS          S Y   ED+V+F+MM VG +Y +LG+ACMRTVKEAE
Sbjct:   62 SRALCFFRFLAVLTVLLALVVIGTNCYIIYDKYTEIKARGILLRVYGILFSIFVIFAELEWSKFTKFFGFLKYWPARGLFYIFVGLITWDQTDATSS----------SSYGTYEDIVSFLMMSVGGIYFLLGLACMRTVKEAE 194
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BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Match: A0A836C943_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C943_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.580e-38
Identity = 99/228 (43.42%), Postives = 129/228 (56.58%), Query Frame = 1 
Query:  271 EPAWAR-EPPA----LRENLV-----VPGEPSPASSAPPAETPPSR---------------------KQAFSKVLCFFRFLTVVTILLAVVVAAVNAYIIYKDY--ESLGVRGILLRVYGIMFSFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSESSSXXXXXXXTYSSDYDDAEDVVAFMMMGVGVVYIILGMACMRTVKEAELGEGPEADDLQK 855
            EPAW + EPPA    L + LV      PG  +P   + PA +  SR                     ++ FSK LCFF+ LT   ILL++ V   N  IIY+D   ++L  R ++LR Y I+F+  +IL+E+EW+ F  +FGFLENWVARG+ YAFVGLITWDQ S+           Y + +      VAFMM+G G  Y +LGMACM+TVKEAEL E  EA DL +
Sbjct:    2 EPAWVKDEPPAAGGDLSQKLVDDAIEAPGG-APGHGSAPAPSSYSRPAGGGGRTSRRGKAKGRAAGGERPFSKTLCFFKALTAFIILLSLFVVVANVLIIYQDSKNDTLEARAVMLRGYAILFAAMIILTEIEWRGFMRLFGFLENWVARGLTYAFVGLITWDQGSD-----------YGTVFGAINQTVAFMMIGAGAFYALLGMACMKTVKEAELRE--EAADLDE 215
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BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Match: A0A7S2CCF9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCF9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.260e-7
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 1 
Query:  400 LCFFRFLTVVTILLAVVVAAVN-AYIIYKDYESLGVRGILLRVYGIMFSFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSESSSXXXXXXXTYSSDYDDAEDVVAFMMMGVGVVYIILGMACMRTVKEAEL 822
            L FF+ + VVT  +AV+ A  N A ++ +  E    +   LR Y ++FS  VI +E++ KR       ++NW  RG+ Y FVGL+     ++                  AE   + +M  +GV+Y ++G++CM+ VKEA +
Sbjct:   15 LRFFQTVGVVTGAVAVLSAMTNGAALVLQPAEF---KECALRFYTMVFSALVIAAEMDVKRLQVDMSVMDNWFCRGLFYLFVGLLPMSFATDHEETAGALSLVLR-----AEAAASMVMALLGVLYALMGISCMKHVKEASI 148
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BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Match: A0A7S4VKT3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VKT3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.590e-7
Identity = 41/144 (28.47%), Postives = 68/144 (47.22%), Query Frame = 1 
Query:  376 RKQAFSKVLCFFRFLTVVTILLAVVVAAVNAYIIYKDYESLGVRGILLRVYGIMFSFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSESSSXXXXXXXTYSSDYDDAEDVVAFMMMGVGVVYIILGMACMRTV 807
            ++  F K+  F  F+T++  +L  +        I   +E +G    +LRVY I  S  VIL+ELE    T     L  W+ RG+ YAF+G++  ++                        VVA+MM+G+G +Y ++G  C++ V
Sbjct:   37 KRHYFHKMFIFINFITIMIAILYGI-----GQFIGIAFEQVGPVQYVLRVYVIALSALVILNELELSSLTTTSKLLNMWITRGLTYAFIGVLGLEENGGVVQVQEGADTEMRDMGILFIKVVAWMMVGIGCLYFVMGCLCLQIV 175
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BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Match: A0A7S3LH58_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LH58_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.240e-6
Identity = 43/145 (29.66%), Postives = 65/145 (44.83%), Query Frame = 1 
Query:  370 PSRKQAFSKVLCFFRFLTVVTILLAVVVAAVN-AYIIYKDYESLGVRGILLRVYGIMFSFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSESSSXXXXXXXTYSSDYDDAEDVVAFMMMGVGVVYIILGMACMR 801
            PSRK       C  RF  ++ ++  V    +    II   YE L +   +LR Y ++    V L E EW  F      L  WV RG+ YAF+G+I   Q                S       V+A++M+G G++Y  +G+AC++
Sbjct:   44 PSRK-------CMHRFFNMIALMTGVCGFLMGLGQIIGMTYEDLDMISYVLRAYILVLCGLVALIEAEWTSFIINSSILRVWVTRGLFYAFIGVIGIQQNENVIDRDHNQRILNKSPSLQFIRVMAWIMVGCGILYFGMGVACLQ 181
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BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Match: A0A7S4NFG8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NFG8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.300e-6
Identity = 37/139 (26.62%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:  409 FRFLTVVTILLAVVVAAVNAYIIYKDYESLGVRGILLRVYGIMFSFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSE----SSSXXXXXXXTYSSDYDDAEDVVAFMMMGVGVVYIILGMACMRTVKE 813
            F F ++V +L  +  + V A I+   +  +G+    LRVY I+F+   +L+E+E          L+NWV RG+ Y+F+GLI  ++        +          +       +V ++ M+GVG++Y+++G+ C++ +K+
Sbjct:   68 FVFFSMVALLACI--SMVIAQILPFFFAKIGILQCCLRVYMILFTLVFVLAEVEMPFIVKHVASLQNWVLRGLMYSFIGLIGAEEARSVVVYKAVKGKLKTGMNTKMVSLFIEVASWAMVGVGLLYLLMGILCLKKIKD 204
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BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Match: A0A2J7ZQN3_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZQN3_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 7.030e-5
Identity = 42/138 (30.43%), Postives = 64/138 (46.38%), Query Frame = 1 
Query:  514 LLRVYGIMFSFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSESSSXXXXXXXTYSSDYDDA----EDVVAFMMMGVGVVYIILGMACMRTVKEAELGEGPE----ADDLQKA*PIRTEPDRTTEANG 903
            LLR+YG++++  ++L E EW+        LE WVARG+A AF+ ++T +    S +          SD+D +      V    M+G    Y+  GM C+ T++ A      E    A DL+     R E  R   A G
Sbjct:   19 LLRLYGVLWAACLVLVEAEWEGLMQWCRILEVWVARGLAQAFLAIMTLELVHSSGN----------SDFDKSVRLYRTVSGMCMLGCSGFYMFGGMLCLGTLRNARYKRLTERLRVAKDLESIEKQRDELSRLLAAYG 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1555.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FY58_ECTSI1.500e-4560.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C943_9STRA4.580e-3843.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CCF9_9STRA2.260e-730.99Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4VKT3_9STRA3.590e-728.47Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3LH58_9STRA4.240e-629.66Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4NFG8_9STRA4.300e-626.62Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2J7ZQN3_9CHLO7.030e-530.43Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1555contigP-wetherbeei_contig1555:2544..4375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY58
PFAMsCOPI_assoc
Model size1649
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue3.67e-50
EggNOG OGs2C9HH@1|root,2RXY3@2759|Eukaryota
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-24_003700.1
DescriptionCOPI associated protein
Cds size621
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.716465-UTR-P-wetherbeei_contig1555:2543..27831683186059.716465-UTR-P-wetherbeei_contig1555:2543..2783Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1555 2544..2783 +
1683186059.7507505-UTR-P-wetherbeei_contig1555:3587..43751683186059.7507505-UTR-P-wetherbeei_contig1555:3587..4375Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1555 3588..4375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.7294-CDS-P-wetherbeei_contig1555:2783..30451683186059.7294-CDS-P-wetherbeei_contig1555:2783..3045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 2784..3045 +
1683186059.7373915-CDS-P-wetherbeei_contig1555:3228..35871683186059.7373915-CDS-P-wetherbeei_contig1555:3228..3587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 3229..3587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1555.2.1prot_P-wetherbeei_contig1555.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1555 2784..3587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1555.2.1

>prot_P-wetherbeei_contig1555.2.1 ID=prot_P-wetherbeei_contig1555.2.1|Name=mRNA_P-wetherbeei_contig1555.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
MMVDRVNSSNEPAWAREPPALRENLVVPGEPSPASSAPPAETPPSRKQAF
SKVLCFFRFLTVVTILLAVVVAAVNAYIIYKDYESLGVRGILLRVYGIMF
SFFVILSELEWKRFTAVFGFLENWVARGVAYAFVGLITWDQTSESSSGSS
SSATTYSSDYDDAEDVVAFMMMGVGVVYIILGMACMRTVKEAELGEGPEA
DDLQKA*
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mRNA from alignment at P-wetherbeei_contig1555:2544..4375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1555.2.1 ID=mRNA_P-wetherbeei_contig1555.2.1|Name=mRNA_P-wetherbeei_contig1555.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1832bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:2544..4375+ (Phaeothamnion wetherbeei SAG_119_79)
CGAAGGAAAACGCTGCACAGTGCGACGGAGCAAGGACGAACGGGTCGGTC
GGTGTGGGAAAACCGAGAAGACGCGCACTAGGCTGCGCCTGCTCCGTCCT
TCAGCAGTCTGGAACCACATTGACCAAGCTCCATCGACGCAAACAGCGTC
ACACGCCGAACGTGCTCGGCGCGGCCTGGGGGCGTTTGAAAGGAGACCTT
TGCCGATCCATCTCGTCGACACCGCACCGACCCATAATACATGATGGTTG
ATCGTGTCAATAGTAGCAACGAGCCGGCATGGGCTCGAGAGCCGCCGGCA
TTGCGAGAAAACCTTGTTGTGCCGGGCGAGCCATCACCAGCGTCGTCGGC
GCCGCCGGCTGAAACTCCGCCGTCGCGAAAGCAGGCCTTTTCGAAAGTGC
TGTGTTTCTTTCGATTCCTCACCGTCGTAACGATCTTGCTCGCCGTCGTC
GTAGCGGCGGTGAACGCGTACATAATCTACAAGGATTACGAAAGCTTGGG
AGGTCAGCTCCACGCCTTGATGTTTGTTCTATCGTTTCCGTGCTCCCATT
CCTTCCTCTCCCTTCCCACGCTTTTTAGCCTGCGAGGCTTCTTTTGTTGG
CTCCGTTGAGGTATTTTGCTTCCTTTCTTTCTAACCAAAATATCTTTGTC
CCGCTTTTCCTGTTTTTCTCCCCAAACCAACCCAGTCCGCGGCATCCTGC
TGAGGGTGTACGGGATCATGTTCTCCTTCTTCGTGATTCTCTCGGAGCTG
GAGTGGAAGCGCTTCACGGCGGTCTTCGGTTTCCTCGAGAACTGGGTCGC
CCGCGGCGTCGCCTATGCCTTCGTCGGCCTCATCACCTGGGACCAGACCT
CCGAGAGCAGCAGCGGCAGCAGCAGCAGCGCCACCACCTACAGCTCTGAC
TACGATGACGCGGAGGACGTCGTGGCCTTCATGATGATGGGCGTCGGCGT
CGTCTACATCATTCTGGGCATGGCATGCATGCGCACTGTCAAAGAGGCCG
AGCTCGGCGAAGGGCCGGAGGCGGACGACCTGCAAAAGGCATGACCGATT
CGAACCGAACCGGACCGAACGACCGAAGCGAACGGTCGGCCGGCGGAACA
GTCGGCCGGCTTGCGGGGCGGCCGGCTACTTGTGGGGGGCAGCGACGGGT
GGAGGCATCTCTCTGGCCGGCATCGCTTGCTTTCCTGCGTTCGGACGCCA
AAGACCGTCGAGCGCCGTCCGGCGCTGGCCTGCCGCTTGCAGCCGCAGGC
ACTGCGATGCCGACAGTTGCCGAAGCGCTGCGAAACAAGGCGTTAGCAGG
ATCTAGCTTGTGGTGTGACTGCGATGCTGAGGGTCCGCGGCGACGAGGTT
AAATGGGGAAGACTCCGGCGACGGCGGCCGGAAAGCGCTCCCCGCTTTCG
GCCTCGCCGTTCTTGCTCTTGTCGGATGGCAAAGCGGCAGGCCAGAAGCA
CCTTGGTGCCGGCAGCGGCAAGCCTGCTTTTAGCCTGCCACCCATTCTCT
CGGTCTTCCCCGCTGCGCGGCCCCGCAGCCGGCTGCGCGCACGCCGAGAC
CACAGTGGCTGCCCGGCGCAGGCCCAGTCGGTACCGGTGCGGTGTTTTTC
TCTTACCCAGTTCCGTAGGGAGAGGCGACCATTGGAGGGAGGTTTTTGTC
GCGCCGGTGTGCATGCCCCATCGAGGCACTTTGGCACGCGGGTACAAATC
GCCACGGCGACTTGTAGATATCATGTTTCGAGTAGTTTGCGACTTTCTGA
AAACAAAGCAACAAGTCGAAGAAGACAATTTGTCCCCCACCGATGCGCCC
TTCAGATGTCGCCAAAGATCTTTATTGTGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1555:2544..4375+

>mRNA_P-wetherbeei_contig1555.2.1 ID=mRNA_P-wetherbeei_contig1555.2.1|Name=mRNA_P-wetherbeei_contig1555.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:2544..4375+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGTTGATCGTGTCAATAGTAGCAACGAGCCGGCATGGGCTCGAGA
GCCGCCGGCATTGCGAGAAAACCTTGTTGTGCCGGGCGAGCCATCACCAG
CGTCGTCGGCGCCGCCGGCTGAAACTCCGCCGTCGCGAAAGCAGGCCTTT
TCGAAAGTGCTGTGTTTCTTTCGATTCCTCACCGTCGTAACGATCTTGCT
CGCCGTCGTCGTAGCGGCGGTGAACGCGTACATAATCTACAAGGATTACG
AAAGCTTGGGAGTCCGCGGCATCCTGCTGAGGGTGTACGGGATCATGTTC
TCCTTCTTCGTGATTCTCTCGGAGCTGGAGTGGAAGCGCTTCACGGCGGT
CTTCGGTTTCCTCGAGAACTGGGTCGCCCGCGGCGTCGCCTATGCCTTCG
TCGGCCTCATCACCTGGGACCAGACCTCCGAGAGCAGCAGCGGCAGCAGC
AGCAGCGCCACCACCTACAGCTCTGACTACGATGACGCGGAGGACGTCGT
GGCCTTCATGATGATGGGCGTCGGCGTCGTCTACATCATTCTGGGCATGG
CATGCATGCGCACTGTCAAAGAGGCCGAGCTCGGCGAAGGGCCGGAGGCG
GACGACCTGCAAAAGGCATGA
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