mRNA_P-wetherbeei_contig15548.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15548.1.1
Unique NamemRNA_P-wetherbeei_contig15548.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: A0A6H5L6F7_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6F7_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.040e-45
Identity = 82/111 (73.87%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 TPPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEILQS 333
            +P QEA++ E AL L   CL+YDFIGTNPDESSED+GTIQVPS WRDVVTD +T +LLF+ Y+TT+PPRSS AMQ+++LLSSVRRSLFAKETDR AYLQQLM FI EILQ+
Sbjct:  204 SPAQEAAMLEQALSLCTRCLSYDFIGTNPDESSEDVGTIQVPSAWRDVVTDSSTFSLLFEFYKTTDPPRSSQAMQSIVLLSSVRRSLFAKETDRAAYLQQLMNFIREILQT 314          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: A0A835YUW2_9STRA (RAN binding protein 16-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW2_9STRA)

HSP 1 Score: 156 bits (395), Expect = 4.560e-42
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 1
Query:    4 PPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEIL 327
            P QEA++ E AL L   CL++DFIGTNPDESSED+GTIQVP  WR+V+TDPATMTL FD Y+TT+PPRSSLAMQ+VILLSSVRRSLF K+ DR A+LQ LM F+ +IL
Sbjct:  208 PKQEAAMGESALNLSQRCLSFDFIGTNPDESSEDVGTIQVPGAWREVITDPATMTLFFDFYKTTDPPRSSLAMQSVILLSSVRRSLFPKDADRAAFLQLLMDFLRDIL 315          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: A0A4D9CV70_9STRA (Importin N-terminal domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV70_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.390e-37
Identity = 72/111 (64.86%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 TPPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEILQS 333
            +P QE  + E AL L V  L++DFIGTNPDES+ED+GTIQVP+TWR +V +P TM+L  D Y+ T+PP SSLA+QAVILLSSVRRSLFA + DR A+LQQL+T I EILQ+
Sbjct:  204 SPQQEVKIAEQALALSVRALSFDFIGTNPDESAEDVGTIQVPNTWRRLVQNPETMSLFLDFYKNTQPPSSSLALQAVILLSSVRRSLFATDKDRAAFLQQLVTAIREILQT 314          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: A0A7S2V5L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5L2_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.430e-35
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 TPPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEILQ 330
            TP QE  +   +L L  +CL YDFIGTNPDES+ED+GTIQ+PS+WR VV D +TM LLF+ Y+T++P  SS AMQ++ILLS+VRRSLF  + DR A+L +LM  + +ILQ
Sbjct:   33 TPEQEDKMATQSLTLSTNCLGYDFIGTNPDESAEDVGTIQIPSSWRSVVQDLSTMDLLFEFYKTSKPAASSQAMQSLILLSAVRRSLFPTDKDRAAFLARLMKGMRDILQ 142          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: B8C1X0_THAPS (Importin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1X0_THAPS)

HSP 1 Score: 132 bits (332), Expect = 1.420e-33
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 1
Query:    4 PPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEILQS 333
            P QE  + E AL L V CLN+DFIGTNPDES+ED+GTIQ PS WR V+ DP T  LL D Y  T+PPRSS AM+AVILL SVRRSLF  + +R+A+L ++M  I E+L++
Sbjct:  210 PQQEVIMGEQALSLTVRCLNFDFIGTNPDESTEDVGTIQAPSAWRPVLQDPGTTELLLDFYANTDPPRSSKAMEAVILLCSVRRSLFPSDKEREAFLGRVMAGIRELLKN 319          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: A0A6U5EJC1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EJC1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.940e-33
Identity = 65/108 (60.19%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   10 QEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEILQS 333
            QEA++ + +L L V CLN+DFIGTNPDES+ED+GTIQVP++WR +V DP+T+ LLF+ Y +TEPP SS AM+AVILL+S RRSLF  + DR A+L+ +M  I EI+ S
Sbjct:  207 QEAAIGDQSLGLCVRCLNFDFIGTNPDESAEDVGTIQVPASWRPIVQDPSTLELLFEFYSSTEPPCSSRAMEAVILLASCRRSLFPSDKDRAAFLEIIMRSIREIMAS 314          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: A0A1E7FRK9_9STRA (Importin N-terminal domain-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FRK9_9STRA)

HSP 1 Score: 130 bits (326), Expect = 9.150e-33
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    4 PPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEIL 327
            P QE  L E +L L V CL++DFIGTNPDES+ED+GTIQ P++WR ++ DPAT  L F+ Y TT PPRSS AM+A+ILL+SVRRSLF  + DR A+L +L+T I E+L
Sbjct:  211 PQQEKILGELSLALAVRCLSFDFIGTNPDESTEDVGTIQAPTSWRTLLQDPATTELFFEFYATTAPPRSSKAMEAIILLASVRRSLFPTDKDRAAFLGRLITGIREML 318          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: H3GGA7_PHYRM (Importin N-terminal domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GGA7_PHYRM)

HSP 1 Score: 129 bits (324), Expect = 1.710e-32
Identity = 59/111 (53.15%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 TPPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEILQS 333
            +P QE+ + + AL LL+ CL++DFIGTNPDESSE+ G++QVPS+WR V+ DP T+ LLFD Y+TT PP +S  ++A++L +SVRR++F+ E +R AYL  L+  IC IL++
Sbjct:  204 SPQQESRMGDQALALLIKCLSFDFIGTNPDESSEETGSLQVPSSWRPVIQDPDTLKLLFDFYKTTNPPNTSKCLEALMLFASVRRNIFSPEKERSAYLAHLLEGICSILRA 314          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: B7FRZ4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRZ4_PHATC)

HSP 1 Score: 127 bits (320), Expect = 5.900e-32
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   22 LCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEIL 327
            L E AL L V CLN+DFIGTNPDES+ED+GTIQ P++WR +++DPAT  LLF+ Y  TEPP+SS AM+A+ILLSSVRRSLF  + DR  +L +L+T I E++
Sbjct:  209 LGEQALSLTVRCLNFDFIGTNPDESTEDVGTIQAPTSWRPLLSDPATTELLFEFYANTEPPQSSKAMEALILLSSVRRSLFPTDKDRAVFLGRLITGIREMM 310          
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Match: A0A2D5QBB5_9EURY (Importin N-terminal domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D5QBB5_9EURY)

HSP 1 Score: 127 bits (320), Expect = 5.900e-32
Identity = 59/104 (56.73%), Postives = 82/104 (78.85%), Query Frame = 1
Query:   22 LCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVTDPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQLMTFICEILQS 333
            +C +AL +   CL++DFIGTNP+ES+ED+GT+QVPS+WR +V D AT+ L FD+Y  TEPPRS+ A++ ++ LSSVRRSLF+ E +R A+LQ LMT I ++L S
Sbjct:  213 MCNFALSMANSCLSFDFIGTNPEESAEDVGTVQVPSSWRSLVQDTATLQLFFDIYANTEPPRSNQALECLVQLSSVRRSLFSSEKERTAFLQALMTGIHDVLTS 316          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15548.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F7_9PHAE1.040e-4573.87Importin N-terminal domain-containing protein n=2 ... [more]
A0A835YUW2_9STRA4.560e-4271.30RAN binding protein 16-like protein n=1 Tax=Tribon... [more]
A0A4D9CV70_9STRA2.390e-3764.86Importin N-terminal domain-containing protein n=3 ... [more]
A0A7S2V5L2_9STRA1.430e-3558.18Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B8C1X0_THAPS1.420e-3360.00Importin N-terminal domain-containing protein n=1 ... [more]
A0A6U5EJC1_9STRA1.940e-3360.19Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1E7FRK9_9STRA9.150e-3360.19Importin N-terminal domain-containing protein n=2 ... [more]
H3GGA7_PHYRM1.710e-3253.15Importin N-terminal domain-containing protein n=22... [more]
B7FRZ4_PHATC5.900e-3261.76Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A2D5QBB5_9EURY5.900e-3256.73Importin N-terminal domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15548contigP-wetherbeei_contig15548:576..1248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3N6
Preferred nameXPO7
PFAMsIBN_N
Model size333
Max annot lvl2759|Eukaryota
KEGG koko:K18460
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0031267,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051020,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons2
Evalue3.8e-45
EggNOG OGsKOG1410@1|root,KOG1410@2759|Eukaryota
Descriptionnuclear export signal receptor activity
Cds size333
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.5376647-CDS-P-wetherbeei_contig15548:575..6951683186059.5376647-CDS-P-wetherbeei_contig15548:575..695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15548 576..695 +
1683186059.5510128-CDS-P-wetherbeei_contig15548:1035..12481683186059.5510128-CDS-P-wetherbeei_contig15548:1035..1248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15548 1036..1248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15548.1.1prot_P-wetherbeei_contig15548.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15548 576..1248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15548.1.1

>prot_P-wetherbeei_contig15548.1.1 ID=prot_P-wetherbeei_contig15548.1.1|Name=mRNA_P-wetherbeei_contig15548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
TPPQEASLCEYALQLLVHCLNYDFIGTNPDESSEDIGTIQVPSTWRDVVT
DPATMTLLFDLYRTTEPPRSSLAMQAVILLSSVRRSLFAKETDRQAYLQQ
LMTFICEILQS
back to top

mRNA from alignment at P-wetherbeei_contig15548:576..1248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15548.1.1 ID=mRNA_P-wetherbeei_contig15548.1.1|Name=mRNA_P-wetherbeei_contig15548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=673bp|location=Sequence derived from alignment at P-wetherbeei_contig15548:576..1248+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCCGCCGCAGGAGGCGTCGCTGTGCGAGTACGCGCTGCAGCTGCTGGT GCACTGCCTCAACTACGACTTTATCGGCACCAACCCGGACGAGAGTTCCG AGGACATCGGCACCATCCAGGTACGTTGGGTCAGTCGGTTGCGATGGCTG TTGGTGGTGGAAATTTTGGCGGCTTCGGGGATAGCAATGGCGGCTGCAAT GGTGACGGCGACAGCGGCTGTGACGGCGTGGCGCCCGCTGTTTGTCGATC GGCAGCATTTTGTAGTGGGAAATCGGTTGTGTGGGCGTTCTTTGTCCACA AACCCTTTGGATCTGTGGCAAATCGCTCTTTTGGATCCTATCTTGTTCAA AAACTTTTGTTTCGCGTGAGCAGCGGCGGCGGGAAGAAGTTATAGAGGAC TCGACACAGGTTGTATTTGCCCTTCTTCCGTTCTACTTTTCTCCTTTTTG CACATCACAGGTCCCGAGCACGTGGCGAGACGTGGTGACGGATCCGGCGA CGATGACGCTGCTCTTTGACCTCTACCGGACGACGGAGCCGCCGCGGTCA TCGCTAGCCATGCAGGCCGTCATCCTGCTGTCGTCCGTCCGTCGGTCCCT CTTCGCCAAAGAGACGGACCGCCAGGCCTACCTGCAGCAGCTCATGACCT TTATCTGTGAGATCCTCCAGTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15548:576..1248+

>mRNA_P-wetherbeei_contig15548.1.1 ID=mRNA_P-wetherbeei_contig15548.1.1|Name=mRNA_P-wetherbeei_contig15548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig15548:576..1248+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCCGCCGCAGGAGGCGTCGCTGTGCGAGTACGCGCTGCAGCTGCTGGT
GCACTGCCTCAACTACGACTTTATCGGCACCAACCCGGACGAGAGTTCCG
AGGACATCGGCACCATCCAGGTCCCGAGCACGTGGCGAGACGTGGTGACG
GATCCGGCGACGATGACGCTGCTCTTTGACCTCTACCGGACGACGGAGCC
GCCGCGGTCATCGCTAGCCATGCAGGCCGTCATCCTGCTGTCGTCCGTCC
GTCGGTCCCTCTTCGCCAAAGAGACGGACCGCCAGGCCTACCTGCAGCAG
CTCATGACCTTTATCTGTGAGATCCTCCAGTCG
back to top