mRNA_P-wetherbeei_contig15541.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15541.1.1
Unique NamemRNA_P-wetherbeei_contig15541.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15541.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15541contigP-wetherbeei_contig15541:279..1393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size815
Hectar predicted targeting categoryother localisation
Exons3
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.3865025-UTR-P-wetherbeei_contig15541:278..5641683186059.3865025-UTR-P-wetherbeei_contig15541:278..564Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15541 279..564 -
1683186059.4235442-UTR-P-wetherbeei_contig15541:1341..13931683186059.4235442-UTR-P-wetherbeei_contig15541:1341..1393Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15541 1342..1393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.3961542-CDS-P-wetherbeei_contig15541:564..5841683186059.3961542-CDS-P-wetherbeei_contig15541:564..584Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15541 565..584 -
1683186059.4054832-CDS-P-wetherbeei_contig15541:787..9521683186059.4054832-CDS-P-wetherbeei_contig15541:787..952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15541 788..952 -
1683186059.4146533-CDS-P-wetherbeei_contig15541:1049..13411683186059.4146533-CDS-P-wetherbeei_contig15541:1049..1341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15541 1050..1341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15541.1.1prot_P-wetherbeei_contig15541.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15541 565..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15541.1.1

>prot_P-wetherbeei_contig15541.1.1 ID=prot_P-wetherbeei_contig15541.1.1|Name=mRNA_P-wetherbeei_contig15541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MHDAPQKHCTVLHIPGKITFATFSPETVSQQRETRTLKTQAMAVIYRVFL
GALMALCCLVLQANTQSAPPGGNAILAHGTAPVRANGLGGGWGDFGGGTP
FGFGGWGGTGGIGGPYGPGIFGPGFGAFGGPGFGGPGFGGPGFGPLPIFP
HTGPWGYW*
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mRNA from alignment at P-wetherbeei_contig15541:279..1393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15541.1.1 ID=mRNA_P-wetherbeei_contig15541.1.1|Name=mRNA_P-wetherbeei_contig15541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1115bp|location=Sequence derived from alignment at P-wetherbeei_contig15541:279..1393- (Phaeothamnion wetherbeei SAG_119_79)
CCAACATCCAAGGGACCTTTACAGCGAAAGAGATGTGCTTCGCTTCGCTG
CGATGCACGATGCACCCCAGAAACACTGTACAGTTCTTCACATTCCAGGA
AAAATCACCTTCGCAACGTTCTCTCCTGAGACCGTCTCCCAGCAGCGTGA
GACGAGGACTTTGAAGACGCAAGCCATGGCCGTTATCTATAGAGTTTTCC
TGGGCGCTCTTATGGCCCTCTGCTGCCTTGTTCTGCAAGCGAACACTCAA
AGCGCCCCACCAGGCGGCAATGCCATCTTGGCTCACGGAACCGCGCCAGT
CCGCGCCAATGGCCTCGGCGGCGGCTGGGGAGACTTCGGAGGAGGTGAGG
CTCTGGGTGTAGAAATTTGCCCCTATGTGGAGCGAGACGGAAAGGATTTT
AAGCCTTTTTTTCCCTCTTTCCTCGTTTCCCTTCGCGGCAGGCACTCCGT
TCGGGTTCGGCGGCTGGGGCGGCACGGGGGGCATTGGTGGCCCGTATGGG
CCAGGAATCTTCGGTCCGGGGTTTGGCGCCTTCGGCGGGCCGGGCTTTGG
CGGACCTGGCTTTGGTGGACCTGGCTTCGGCCCCTTGCCCATCTTCCCCC
ACACCGGTAAGCTGTCCTGGCAACTCTTCCATGTGTGAAGTGTATGTTTA
GTTCTCTCGCCCTTTTGGGGAAAGGCCTCCCATCACTGAATGCTCTTTAA
CCGAATGTTCGCCCTTTCTGTTGCCTAGTTGGGTTGTTAGGTACCTGTTT
GGCACCCGCTTGGAAGCCGAAGTCTACCTTTGTTTCGCTTCTCTTTTTTC
GGCGTGCAGGTCCGTGGGGCTACTGGTAGCACGAAACGAGAGGGAAACCG
CCGAGGAGAAGCCAGAAAATGACATGTTGTGACGTTTCGAGAAGGTGTAC
GCCAGCGACGCCGGTGCCAGTGCCGGCTGCCGTGGCAGTGGCGCCAATGG
TTGTGGCGGCCGCCGTAGCGGTGGCGGCTCCAGCTATCTATCTATTTGGT
GCTCAATGCATTCGGGTCGAGAATCGACGTTCCCTTCGGATCGTCGTGTT
GGACGTTGGGCAGATGGGATTAGTGCAAGTAGTGTGACTGAATACAAAAA
ACAATTCACCTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15541:279..1393-

>mRNA_P-wetherbeei_contig15541.1.1 ID=mRNA_P-wetherbeei_contig15541.1.1|Name=mRNA_P-wetherbeei_contig15541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig15541:279..1393- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGATGCACCCCAGAAACACTGTACAGTTCTTCACATTCCAGGAAA
AATCACCTTCGCAACGTTCTCTCCTGAGACCGTCTCCCAGCAGCGTGAGA
CGAGGACTTTGAAGACGCAAGCCATGGCCGTTATCTATAGAGTTTTCCTG
GGCGCTCTTATGGCCCTCTGCTGCCTTGTTCTGCAAGCGAACACTCAAAG
CGCCCCACCAGGCGGCAATGCCATCTTGGCTCACGGAACCGCGCCAGTCC
GCGCCAATGGCCTCGGCGGCGGCTGGGGAGACTTCGGAGGAGGCACTCCG
TTCGGGTTCGGCGGCTGGGGCGGCACGGGGGGCATTGGTGGCCCGTATGG
GCCAGGAATCTTCGGTCCGGGGTTTGGCGCCTTCGGCGGGCCGGGCTTTG
GCGGACCTGGCTTTGGTGGACCTGGCTTCGGCCCCTTGCCCATCTTCCCC
CACACCGGTCCGTGGGGCTACTGGTAG
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