mRNA_P-wetherbeei_contig1554.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1554.1.1
Unique NamemRNA_P-wetherbeei_contig1554.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1554.1.1 vs. uniprot
Match: D8LH54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH54_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 3.800e-69
Identity = 270/870 (31.03%), Postives = 377/870 (43.33%), Query Frame = 1 
Query:    1 DLARLRHTTLRLFPSDHAVIVMTAFPAAGERWLTVFKDGHVMGLRPRVTREQQGAGGVPAVTLGSGAGFDRPNSESPSDPAAWSTNFSLHFADGARLVASQTVGAPSNASNGVSSGNXXXXXXXXXXXXXXXXGAVSIAITLPCGLIVTHCSVGGGIRQQRVGNARPNAAAATATDFTTAGATASIWELHRTIVRKGTVVRVLLDGSREMLFATGEVLRLAAGGAGCTLTDKRGRRFARTTCMNG----GSVAAPDAAKKGNVGH--------QRGSLRFSPSTVADPGPSAGGSMPAAAENSSGGGGRFGDGVFGGDFGGGSSRWQLLPSEDWAPASELLDVGTGAVCWCRADGSS--VSLFPNGTVLTRHADGTTQRTSAPLQNG-AIRTGKVLVETPGLASVEVDVDSDSAAIAHIQDLERRR---LRRGGPGRIRTTTALPDGGIVLVTYDARSTTQIRGKVVHVAPDRTEMIASEDGTIVVRPSRLWEGTPAHARMGEAGGGMPSRLPEPDRLVGCYRFHLPKGLLDVEDFERNRFRVGVA-TPFLP-----SGTASSSALGASPKSSAPGSPSRQQRPLGXXXXXXXXXXXXXXXXXXAGAIVDLAGRQLAELSATAVVNAPAQPRLLVCRRDGSAVELLRGADVEGWERRLAAAAA----------------HD--------PAAVVRGEPRRVRSDPADLGATLHTFQM-ALPPPRPRGGDGFFEHVCSQRGLEGLLAFDAGYVGGSGISRSGGGTTGSLT-WRVRPLPLCA----SLASGLPASSAASAAGASASAVPPSPWAATVAVRRALEERLPLSPPGRRELRQAVAAWRRWRRERAGQLERFRVIDPRTPAQLEAE 2448
            DL R +  +++LFP+DH+++VM+ F A  +RWL+VFKD HVMGLR               +T       D+ ++ SP      S     H  D        T G  +N   G+                                ++ +  S GG      V  A  +                   E  R +V KGTVVR + DGS +MLF TG+V+     G    LTDK G+RF +T         G+V  P    KG            Q     + P   +    S+G   P+ A        +  D    G    G S  ++   +D  P +   DV TGA  WC   G+   +  + +   +TRHADGTTQR     ++G A   G +LVE PG ASVEVD++ +     H     RR+   + RGG  R+R    +P+GG+ LV+YD R T+Q+ G+VV+V  D TE+IA++ G +VVRP  +WEG P H ++      MP    +PD LVG Y+F   KG+++ ED +RNRF V V  T FL      S    S+A GA+  +S    P + +R                      G  +DLAG + A + + A+VN P +PRL + RRDGSA+ELLR  D   W  RLA  +                 HD        PA  V    +    DP   GA   +F +  LP PR   G+G F           LL    G V G+    +     GS + WR RPLPL A        G+PA   ++              A    +RR   E  PLS      LRQ++A W  W++ R  Q++RF V DPR   ++EA+
Sbjct:  348 DLDRAKTKSIKLFPADHSLVVMSGFVATSQRWLSVFKDQHVMGLR---------------LT-------DKSDNTSPRGRTGES-----HGVD--------TKGTNANRQVGMKF------------------------------VLDSKRSPGGKCLSGFVPEAAKD-------------------EFARAVVGKGTVVRYMRDGSIQMLFVTGDVV--VRNGEETILTDKFGKRFRKTQTPVSPAATGNVNNPTPPAKGKASRATPPPNVLQASCTEWVPIPPSTHKQSSG--QPSIANKD-----KHDDRT--GPTSSGFSASKM--PDDGTPVT---DVETGATVWCPPGGNGRVIVEYEDELTVTRHADGTTQRWRQGKEDGGAAAAGLILVECPGFASVEVDIEVEEMCSKHA----RRKPVTITRGG-NRVRLRAVMPNGGVTLVSYDTRVTSQVCGRVVYVHSDNTEVIANDKGEVVVRPRGMWEGEPVHGKLAGPNSSMPPNCEQPDLLVGTYKFDCLKGVMESEDTDRNRFVVDVTKTAFLREDFSISREGGSTADGATSPTSPKEKPEKSKR-----------GSSRPSSGKSNGVSIDLAG-ETAGMRSEALVNEPLEPRLFIYRRDGSALELLRNDDARTWCERLAPISPSQSQQQQPRLGVNKDNHDNRRRSLDGPARAVDVREQDCCPDPHSHGARQLSFYVPVLPTPR---GEGSFAA---------LLQHWPGRVFGNDYDHTE--NVGSKSSWRTRPLPLAARARLGAQVGIPARGCST--------------AMEACIRRVWLEHPPLSTTAAEGLRQSLAEWEAWKQSRIAQIDRFLVSDPRPTEEVEAQ 1072
[Close]
BLAST of mRNA_P-wetherbeei_contig1554.1.1 vs. uniprot
Match: A0A836CK78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK78_9STRA)

HSP 1 Score: 218 bits (556), Expect = 3.450e-55
Identity = 280/811 (34.53%), Postives = 342/811 (42.17%), Query Frame = 1 
Query:  241 AAWSTNFSLHFADGARLVASQTVGAPSNASNGVSSGNXXXXXXXXXXXXXXXXGAVSIAITLPCGLIVTHCSVGGGIRQQRVGNARPNAAAATATDFTTAGATASIW-ELHRTIVRKGTVVRVLLDGSREMLFATGEVL---RLAAGG------------------AGCTLTDKRGRRFARTTCMNGGSVAAPDAAKKGNVGHQRGSLRFSPST--VADPGPSAGGSMPAAAENSSGGGGRFGDGVFGGDFGGGSSRWQLLPSEDWAP------ASELLDVGTGAVCWCRADGSSVSLFPNGTVLTRHADGTTQRTSAPLQNGAIRTGKVLVETPGLASVEVDVDSDSAAIAHIQDLERRRLRRGGPGRIRTTTALPDGGIVLVTYDARSTTQIRGKVVHVAPDRTEMIASEDGTIVVRPSRLWEGTPAHARMGEAGGGMPSRL--------------PEPDRLVGCYRFHLPKGLLDVEDFERNRFRVGVATP-FLPSGTASSSALGASPKSSAPGSPSRQQRPLGXXXXXXXXXXXXXXXXXXAGAIVDLAGRQLAELSATAVVNAPAQPRLLVCRRDGSAVELLRGADVEGWERRLAAAAAHDP-AAVVR---GEPRRVRSDPADLGA----TLHTFQMALPPPR---PRGGDGFFEHVCSQRGLEGLLAFDAGYVGGSGISRSGGGTTGSLTWRVRPLPLCASLASG-LPASSAASAAGASASAVPPSPWAATVAVRRALEERLPLSPPGRRELRQAVAAWRRWRRERAGQLERFRVIDPRTPAQLEAEAAAATLARKAYKVAKALR 2502
            A W   F L    GAR+ A     APS                          G V++A TLP GL+VTHCS  G +RQ+ VG A P  +                  EL R +  +G V R   DG R +L   GE     R    G                  A   + D+ G+R+ +      G                            + DP P     + AA                       +  WQ L             A  + D G    CW RA G     F +GTV+TRH DGT QRT+    +G I   KVLVE PG ASVEVD ++  AA AH              GR    TALPDGG V VTYDAR T  + G+V  +APDRTE++AS+DG +VVRP  LW G PA A+M    G +PS                 EPD  VG Y + L +  LD+ED +RNRF V +++  FL     S     AS                 XXXXXXXXXXXXXXXXXXAG  V+L G ++A + A A+V AP +PRL VC RDGSA ELL  A VE W+ RLA     D  AA V    G            G     T H        P    PR     + HV  +    G   FDA +   S            L+ R + LP  A L +G LPA S+        SA  P+ W     VR   EE  PL      ELR AVAA   WRR RA +++ F + D R  AQLE E  A  L R+AY+ AKALR
Sbjct: 1040 AGWPAQFVLETGRGARVCARAGPPAPSKPDG---------------------CGTVALAHTLPSGLVVTHCS-DGTVRQEYVGCAPPGGSGXXXXXXXXXXXXXXAEDELWRVVSVRGAVTRRFRDGRRCVLLPGGECAERRRRCGDGDSVGSSXXXXXXXXXXXEAEWEMVDRYGQRYRQAPHSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHDPLPPP---LDAAC----------------------ADGWQALSDXXXXXXXSAQRARCVRDPGGAWACWLRAGGGVTVEFEDGTVVTRHDDGTLQRTTT-CGDGVI---KVLVEAPGFASVEVDANAQRAAAAHTAGQRVAAAAGSSGGRALLRTALPDGGAVAVTYDARVTAAVCGRVAWIAPDRTEVVASDDGQVVVRPPCLWTGQPAFAQMAGPQGAIPSNTRCEPSAQARRGCVGSEPDLAVGAYCYDLLRATLDLEDADRNRFHVDLSSAAFL---EPSQEPSRASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVAVELTG-EMAGVCA-ALVEAPREPRLFVCARDGSAQELLSDAAVERWQSRLALLPRDDVHAAAVECRDGGSGXXXXXXXXXGCVRQLTFHRMDTVAGRPSRFAPRAQQ--YPHVADRPLPCGPGLFDALFTSPSAQQ--------PLSSRYQ-LPEVALLHAGVLPAISS--------SAQVPAAW-----VRTEWEEHAPLPADAEEELRGAVAAVAAWRRRRAAEMDAFVLKDSREAAQLEEETKARLLVRRAYRAAKALR 1770
[Close]
BLAST of mRNA_P-wetherbeei_contig1554.1.1 vs. uniprot
Match: A0A8J2SPN0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPN0_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.050e-29
Identity = 108/313 (34.50%), Postives = 142/313 (45.37%), Query Frame = 1 
Query:  988 DVGTGAVCWCRADGSSVSLFPNGTVLTRHADGTTQRTSAPLQNGAIRTGKVLVETPGLASVEVDVDSDSAAIAHIQDLERRRLRRGGPGRIRTTTALPDGGIVLVTYDARSTTQIRGKVVHVAPDRTEMIASEDGTIVVRPSRLWEGTPAHARMGEAGGGM--------------PSRLPEPDRLVGCYRFHLPKGLLDVEDFERNRFRVGVATPFLPSGTASSSALGASPKSSAPGSPSRQQRPLGXXXXXXXXXXXXXXXXXXAGAI-VDLAGRQLAELSATAVVNAPAQPRLLVCRRDGSAVELLRGADV 1881
            D  TGA  W R D +S+++F +G VL +HADGT  RT             V+VE PGLA+VE+D D D+ A AH Q   +  + +GG  RIR   ALPDG  V+ TYD   T  +RG++  + PDRTE++A +DG I +RP  L++G    AR      G+                   EPD   G YRF    G + +ED E N F+  +                                                     AG + V+LAG   A + A AVVN+P  PR     RDGSAVELLR +DV
Sbjct:  872 DAATGARVWMRGD-TSLTIFEDGVVLAKHADGTIIRTCEH---------HVIVECPGLAAVEIDTDIDATATAHAQG-HQVAVAKGGE-RIRCRVALPDGSRVVATYDTSVTATVRGRLALLRPDRTEILAQDDGLITLRPPELYQGGSVKARGEHHPYGLLAPWCEAHDDDESDDEAKSEPDTAAGAYRFDCVAGSMSLEDPEYNIFKAHLC-------------------------------------------------GKQAGDVEVELAGVS-AGVKAEAVVNSPVAPRCFCIGRDGSAVELLRDSDV 1122
[Close]
BLAST of mRNA_P-wetherbeei_contig1554.1.1 vs. uniprot
Match: A0A7S2WKM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKM0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.790e-7
Identity = 49/145 (33.79%), Postives = 61/145 (42.07%), Query Frame = 1 
Query: 1492 DRLVGCYRFHLPKGLLDVEDFERNRFRVGVATPFLPSGTASSSALGASPKSSAPGSPSRQQRPLGXXXXXXXXXXXXXXXXXXAGAIVDLAGR-QLAELSATAVVNAPAQPRLLVCRRDGSAVELLRGADVEGWERRLAAAAAHD 1923
            D L G Y F+L +  + +ED E N F V + T  L                                                    VDLAG+ Q  E+ A AVVN P  PR+ + RRDGSA ELLR ADVE W+RR++A A  D
Sbjct:   49 DALCGAYEFNLYRAHMSMEDSEHNIFNVSLDTKHL-------------------------------------------------SYSVDLAGKIQGDEIKAEAVVNNPTPPRVFILRRDGSASELLRPADVEDWKRRVSAFAPGD 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1554.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH54_ECTSI3.800e-6931.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CK78_9STRA3.450e-5534.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SPN0_9STRA5.050e-2934.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WKM0_9STRA6.790e-733.79Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1554contigP-wetherbeei_contig1554:3928..6993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LH54
Model size2502
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.23e-70
EggNOG OGs28K8A@1|root,2QSP1@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000600.1
Cds size2502
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.2648199-CDS-P-wetherbeei_contig1554:3927..41151683186059.2648199-CDS-P-wetherbeei_contig1554:3927..4115Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1554 3928..4115 +
1683186059.274647-CDS-P-wetherbeei_contig1554:4382..47501683186059.274647-CDS-P-wetherbeei_contig1554:4382..4750Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1554 4383..4750 +
1683186059.2840812-CDS-P-wetherbeei_contig1554:4816..54961683186059.2840812-CDS-P-wetherbeei_contig1554:4816..5496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1554 4817..5496 +
1683186059.291553-CDS-P-wetherbeei_contig1554:5601..59641683186059.291553-CDS-P-wetherbeei_contig1554:5601..5964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1554 5602..5964 +
1683186059.2993376-CDS-P-wetherbeei_contig1554:6090..69931683186059.2993376-CDS-P-wetherbeei_contig1554:6090..6993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1554 6091..6993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1554.1.1prot_P-wetherbeei_contig1554.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1554 3928..6993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1554.1.1

>prot_P-wetherbeei_contig1554.1.1 ID=prot_P-wetherbeei_contig1554.1.1|Name=mRNA_P-wetherbeei_contig1554.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=834bp
DLARLRHTTLRLFPSDHAVIVMTAFPAAGERWLTVFKDGHVMGLRPRVTR
EQQGAGGVPAVTLGSGAGFDRPNSESPSDPAAWSTNFSLHFADGARLVAS
QTVGAPSNASNGVSSGNGGGGGGSSGGGGGGGSGAVSIAITLPCGLIVTH
CSVGGGIRQQRVGNARPNAAAATATDFTTAGATASIWELHRTIVRKGTVV
RVLLDGSREMLFATGEVLRLAAGGAGCTLTDKRGRRFARTTCMNGGSVAA
PDAAKKGNVGHQRGSLRFSPSTVADPGPSAGGSMPAAAENSSGGGGRFGD
GVFGGDFGGGSSRWQLLPSEDWAPASELLDVGTGAVCWCRADGSSVSLFP
NGTVLTRHADGTTQRTSAPLQNGAIRTGKVLVETPGLASVEVDVDSDSAA
IAHIQDLERRRLRRGGPGRIRTTTALPDGGIVLVTYDARSTTQIRGKVVH
VAPDRTEMIASEDGTIVVRPSRLWEGTPAHARMGEAGGGMPSRLPEPDRL
VGCYRFHLPKGLLDVEDFERNRFRVGVATPFLPSGTASSSALGASPKSSA
PGSPSRQQRPLGPAAAAAAAAARAASAAASAGAIVDLAGRQLAELSATAV
VNAPAQPRLLVCRRDGSAVELLRGADVEGWERRLAAAAAHDPAAVVRGEP
RRVRSDPADLGATLHTFQMALPPPRPRGGDGFFEHVCSQRGLEGLLAFDA
GYVGGSGISRSGGGTTGSLTWRVRPLPLCASLASGLPASSAASAAGASAS
AVPPSPWAATVAVRRALEERLPLSPPGRRELRQAVAAWRRWRRERAGQLE
RFRVIDPRTPAQLEAEAAAATLARKAYKVAKALR
back to top

mRNA from alignment at P-wetherbeei_contig1554:3928..6993+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1554.1.1 ID=mRNA_P-wetherbeei_contig1554.1.1|Name=mRNA_P-wetherbeei_contig1554.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3066bp|location=Sequence derived from alignment at P-wetherbeei_contig1554:3928..6993+ (Phaeothamnion wetherbeei SAG_119_79)
GACCTGGCGCGACTGCGACACACCACGCTGCGACTCTTCCCCAGCGACCA
CGCCGTTATCGTGATGACTGCCTTCCCGGCCGCCGGCGAGCGGTGGCTGA
CTGTCTTCAAGGACGGTCACGTCATGGGTCTCCGGCCACGCGTCACCCGG
GAGCAGCAGGGGGCTGGCGGGGTTCCGGCCGTTACGCTGTCGAAGCTGCC
GCGAAAAACCTCTCAGGGCAAGTGCGGCAGCGCCGGGGGGGCGGGCAGGC
GGAGCACCGGCGGCGGCGGGGGTGGTGCCGGCATCGAGACAGCGGCGGCA
GTGGCGGCCACCAATAGTGCCGCCGACAGCGGCACCGCGACGTCAGGAGA
TGGAGGCGGCGAGGGTAGCCCTGTGCGGCGTGAGAGCCGTCAGAACACCG
ACGCTGCGGCAGCGGCAGCAGCAGGAAGCGCAGCATCGAGGGTAGGGAGT
GACAGTGGCAGTGGTGCCGGCTTTGACCGCCCAAATTCGGAAAGCCCTTC
CGATCCGGCCGCATGGTCGACAAATTTCTCTCTGCACTTTGCCGACGGCG
CGCGGTTGGTGGCGAGCCAAACCGTTGGCGCGCCGTCAAACGCTAGTAAT
GGAGTCAGCAGCGGCAACGGCGGCGGCGGCGGCGGCAGCAGCGGCGGCGG
CGGCGGCGGCGGCAGTGGCGCGGTGAGCATTGCGATCACGCTGCCCTGCG
GCCTCATCGTGACGCATTGCAGTGTCGGCGGCGGCATCCGACAGCAGCGG
GTGGGAAACGCCCGCCCGAACGCTGCCGCTGCAACCGCCACTGACTTTAC
CACCGCCGGCGCCACCGCTAGCAGTGACAAGGCTCCGGCCTCGGCAGCAG
CGGCTGCGGAGGCAGGTGTAGCGGCACCTTCAGCGACAGTATGGGAGCTG
CACCGCACGATAGTCAGAAAGGGAACGGTGGTACGGGTGCTGCTGGACGG
CTCGCGAGAGATGCTCTTCGCGACGGGGGAAGTGCTTCGGCTGGCGGCGG
GCGGCGCCGGCTGCACTCTCACCGACAAGCGGGGGCGGCGCTTCGCCCGG
ACGACGTGTATGAATGGCGGGAGCGTGGCGGCGCCCGATGCCGCAAAGAA
AGGTAACGTCGGGCACCAACGCGGCAGCCTCAGGTTCAGCCCGAGCACGG
TGGCGGATCCGGGCCCGTCTGCTGGAGGTTCAATGCCCGCGGCAGCAGAA
AATAGCAGCGGCGGCGGTGGCCGTTTTGGCGACGGCGTTTTTGGCGGCGA
CTTCGGCGGCGGCAGTAGCCGCTGGCAGCTGCTTCCGTCCGAGGATTGGG
CGCCCGCGTCGGAACTCCTCGACGTCGGGACCGGCGCCGTCTGCTGGTGC
CGAGCCGACGGCAGCAGCGTCTCCCTCTTCCCCAATGGAACGGTTCTGAC
GCGCCACGCTGACGGTACCACGCAGCGGACCTCCGCGCCGCTGCAGAACG
GCGCCATCCGCACCGGAAAGGTCCTCGTGGAGACGCCGGGATTGGCATCC
GTGGAAGTAGACGTCGATTCCGACAGCGCCGCCATCGCCCACATTCAGGA
CCTCGAGCGCCGCCGTCTTGTCCTCACCAGCCAAAGCGCAGGCGGTGGCG
GCGGCGGCGGCGGTGGCGGCAGTGGCACGCGGCGGGCAGGCATCATGATG
AGCGAGGAGGCGGCTGCGGCACAGCGCCGCGGCGGTCCCGGCCGCATCCG
CACTACGACGGCGTTGCCCGACGGCGGCATCGTCCTGGTCACCTACGATG
CCCGCTCCACCACCCAAATCCGCGGCAAAGTCGTCCATGTCGCTCCCGAC
AGGACCGAGATGATTGCCAGCGAAGATGGCACCATCGTTGTGCGGCCGAG
CCGTCTGTGGGAAGGGACGCCAGCGCACGCCCGCATGGGGGAGGCCGGCG
GCGGCATGCCCAGCCGGCTGCCGGAGCCAGACCGGCTGGTCGGCTGCTAT
CGCTTCCATTTGCCCAAAGGTCTGCTCGACGTGGAAGACTTTGAGCGGAA
TCGTTTCCGCGTCGGCGTCGCCACGCCCTTTCTGCCCGTGCCTGGCGCTA
CTCCTGCCACTGCAAGAGAAGCGCTGACAGACGCCACTGCAGGCGGTACT
GGCGGAGGCGACATCGCCGGAAGCAGTGGCGGCGGCGGCGGCAGCGGCAG
TGCATCAGTAGAGAGCGGCACCGCTTCCTCCAGCGCCTTGGGCGCCAGCC
CGAAGAGTTCGGCTCCAGGGTCACCGTCTCGTCAGCAGCGGCCGCTGGGC
CCCGCCGCCGCGGCGGCTGCGGCGGCGGCACGTGCCGCGTCGGCTGCCGC
CTCCGCCGGCGCGATTGTCGACCTGGCGGGCCGGCAGCTGGCCGAGCTGT
CGGCGACAGCCGTCGTCAACGCGCCGGCGCAGCCGCGGCTGCTCGTCTGC
CGCCGCGACGGCTCCGCCGTGGAGCTGCTGCGGGGCGCCGATGTCGAGGG
GTGGGAGCGGCGGTTGGCAGCGGCGGCTGCGCATGATCCCGCCGCGGTCG
TCCGGGGGGAACCGCGGCGGGTACGAAGCGACCCGGCGGACCTTGGGGCG
ACGCTGCACACCTTTCAGATGGCGCTGCCGCCACCGCGGCCGCGCGGCGG
GGACGGTTTTTTTGAGCACGTCTGCTCACAGCGGGGGCTGGAGGGGCTAC
TGGCTTTCGACGCCGGCTACGTCGGCGGAAGTGGCATTTCTCGCAGCGGC
GGCGGCACGACGGGATCTTTAACGTGGCGCGTCCGACCGCTGCCGCTGTG
CGCTTCCCTCGCCTCCGGCTTGCCGGCGTCCTCGGCGGCATCAGCGGCGG
GGGCCTCCGCATCGGCGGTGCCACCGTCGCCATGGGCGGCCACCGTCGCC
GTGCGACGCGCCCTGGAGGAGCGCCTGCCGCTGTCGCCGCCGGGGCGGCG
GGAGCTGCGGCAGGCCGTCGCCGCCTGGCGGCGGTGGCGGCGGGAGCGGG
CCGGCCAGCTCGAGCGCTTCCGCGTGATCGACCCGCGCACGCCGGCCCAG
CTCGAGGCCGAGGCAGCGGCGGCAACTCTGGCGCGCAAGGCGTATAAAGT
GGCCAAGGCGCTGAGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1554:3928..6993+

>mRNA_P-wetherbeei_contig1554.1.1 ID=mRNA_P-wetherbeei_contig1554.1.1|Name=mRNA_P-wetherbeei_contig1554.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2502bp|location=Sequence derived from alignment at P-wetherbeei_contig1554:3928..6993+ (Phaeothamnion wetherbeei SAG_119_79)
GACCTGGCGCGACTGCGACACACCACGCTGCGACTCTTCCCCAGCGACCA
CGCCGTTATCGTGATGACTGCCTTCCCGGCCGCCGGCGAGCGGTGGCTGA
CTGTCTTCAAGGACGGTCACGTCATGGGTCTCCGGCCACGCGTCACCCGG
GAGCAGCAGGGGGCTGGCGGGGTTCCGGCCGTTACGCTTGGCAGTGGTGC
CGGCTTTGACCGCCCAAATTCGGAAAGCCCTTCCGATCCGGCCGCATGGT
CGACAAATTTCTCTCTGCACTTTGCCGACGGCGCGCGGTTGGTGGCGAGC
CAAACCGTTGGCGCGCCGTCAAACGCTAGTAATGGAGTCAGCAGCGGCAA
CGGCGGCGGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCAGTG
GCGCGGTGAGCATTGCGATCACGCTGCCCTGCGGCCTCATCGTGACGCAT
TGCAGTGTCGGCGGCGGCATCCGACAGCAGCGGGTGGGAAACGCCCGCCC
GAACGCTGCCGCTGCAACCGCCACTGACTTTACCACCGCCGGCGCCACCG
CTAGCATATGGGAGCTGCACCGCACGATAGTCAGAAAGGGAACGGTGGTA
CGGGTGCTGCTGGACGGCTCGCGAGAGATGCTCTTCGCGACGGGGGAAGT
GCTTCGGCTGGCGGCGGGCGGCGCCGGCTGCACTCTCACCGACAAGCGGG
GGCGGCGCTTCGCCCGGACGACGTGTATGAATGGCGGGAGCGTGGCGGCG
CCCGATGCCGCAAAGAAAGGTAACGTCGGGCACCAACGCGGCAGCCTCAG
GTTCAGCCCGAGCACGGTGGCGGATCCGGGCCCGTCTGCTGGAGGTTCAA
TGCCCGCGGCAGCAGAAAATAGCAGCGGCGGCGGTGGCCGTTTTGGCGAC
GGCGTTTTTGGCGGCGACTTCGGCGGCGGCAGTAGCCGCTGGCAGCTGCT
TCCGTCCGAGGATTGGGCGCCCGCGTCGGAACTCCTCGACGTCGGGACCG
GCGCCGTCTGCTGGTGCCGAGCCGACGGCAGCAGCGTCTCCCTCTTCCCC
AATGGAACGGTTCTGACGCGCCACGCTGACGGTACCACGCAGCGGACCTC
CGCGCCGCTGCAGAACGGCGCCATCCGCACCGGAAAGGTCCTCGTGGAGA
CGCCGGGATTGGCATCCGTGGAAGTAGACGTCGATTCCGACAGCGCCGCC
ATCGCCCACATTCAGGACCTCGAGCGCCGCCGTCTTCGCCGCGGCGGTCC
CGGCCGCATCCGCACTACGACGGCGTTGCCCGACGGCGGCATCGTCCTGG
TCACCTACGATGCCCGCTCCACCACCCAAATCCGCGGCAAAGTCGTCCAT
GTCGCTCCCGACAGGACCGAGATGATTGCCAGCGAAGATGGCACCATCGT
TGTGCGGCCGAGCCGTCTGTGGGAAGGGACGCCAGCGCACGCCCGCATGG
GGGAGGCCGGCGGCGGCATGCCCAGCCGGCTGCCGGAGCCAGACCGGCTG
GTCGGCTGCTATCGCTTCCATTTGCCCAAAGGTCTGCTCGACGTGGAAGA
CTTTGAGCGGAATCGTTTCCGCGTCGGCGTCGCCACGCCCTTTCTGCCCA
GCGGCACCGCTTCCTCCAGCGCCTTGGGCGCCAGCCCGAAGAGTTCGGCT
CCAGGGTCACCGTCTCGTCAGCAGCGGCCGCTGGGCCCCGCCGCCGCGGC
GGCTGCGGCGGCGGCACGTGCCGCGTCGGCTGCCGCCTCCGCCGGCGCGA
TTGTCGACCTGGCGGGCCGGCAGCTGGCCGAGCTGTCGGCGACAGCCGTC
GTCAACGCGCCGGCGCAGCCGCGGCTGCTCGTCTGCCGCCGCGACGGCTC
CGCCGTGGAGCTGCTGCGGGGCGCCGATGTCGAGGGGTGGGAGCGGCGGT
TGGCAGCGGCGGCTGCGCATGATCCCGCCGCGGTCGTCCGGGGGGAACCG
CGGCGGGTACGAAGCGACCCGGCGGACCTTGGGGCGACGCTGCACACCTT
TCAGATGGCGCTGCCGCCACCGCGGCCGCGCGGCGGGGACGGTTTTTTTG
AGCACGTCTGCTCACAGCGGGGGCTGGAGGGGCTACTGGCTTTCGACGCC
GGCTACGTCGGCGGAAGTGGCATTTCTCGCAGCGGCGGCGGCACGACGGG
ATCTTTAACGTGGCGCGTCCGACCGCTGCCGCTGTGCGCTTCCCTCGCCT
CCGGCTTGCCGGCGTCCTCGGCGGCATCAGCGGCGGGGGCCTCCGCATCG
GCGGTGCCACCGTCGCCATGGGCGGCCACCGTCGCCGTGCGACGCGCCCT
GGAGGAGCGCCTGCCGCTGTCGCCGCCGGGGCGGCGGGAGCTGCGGCAGG
CCGTCGCCGCCTGGCGGCGGTGGCGGCGGGAGCGGGCCGGCCAGCTCGAG
CGCTTCCGCGTGATCGACCCGCGCACGCCGGCCCAGCTCGAGGCCGAGGC
AGCGGCGGCAACTCTGGCGCGCAAGGCGTATAAAGTGGCCAAGGCGCTGA
GA
back to top